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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1056 |
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1304 |
| AccBSI | CCGCTC | 1 cut(s) | 31 |
| AccII | CGCG | 1 cut(s) | 333 |
| AciI | CCGC | 6 cut(s) | 31, 314, 402, 682, 1153, 1166 |
| AclWI | GGATC | 1 cut(s) | 416 |
| AcsI | RAATTY | 3 cut(s) | 271, 317, 327 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcvI | CACGTG | 2 cut(s) | 1193, 1211 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AdeI | CACNNNGTG | 1 cut(s) | 1196 |
| AfaI | GTAC | 1 cut(s) | 1117 |
| AfeI | AGCGCT | 1 cut(s) | 753 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 559, 626, 888, 1070, 1071, 1212, 1288, 1304 |
| AflIII | ACRYGT | 2 cut(s) | 1190, 1208 |
| AgsI | TTSAA | 5 cut(s) | 524, 591, 614, 802, 1017 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 838 |
| AjnI | CCWGG | 1 cut(s) | 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 750, 782 |
| AluBI | AGCT | 7 cut(s) | 12, 20, 617, 668, 866, 922, 977 |
| AluI | AGCT | 7 cut(s) | 12, 20, 617, 668, 866, 922, 977 |
| Alw26I | GTCTC | 2 cut(s) | 732, 958 |
| AlwI | GGATC | 1 cut(s) | 416 |
| Ama87I | CYCGRG | 1 cut(s) | 735 |
| Aor51HI | AGCGCT | 1 cut(s) | 753 |
| AoxI | GGCC | 3 cut(s) | 628, 1019, 1240 |
| ApeKI | GCWGC | 3 cut(s) | 9, 12, 20 |
| ApoI | RAATTY | 3 cut(s) | 271, 317, 327 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 867 |
| AspA2I | CCTAGG | 1 cut(s) | 1286 |
| AspLEI | GCGC | 4 cut(s) | 335, 687, 754, 1077 |
| AspS9I | GGNCC | 2 cut(s) | 1020, 1240 |
| AsuHPI | GGTGA | 1 cut(s) | 1232 |
| AvaI | CYCGRG | 1 cut(s) | 735 |
| AvrII | CCTAGG | 1 cut(s) | 1286 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 1124 |
| BauI | CACGAG | 1 cut(s) | 1173 |
| BbrPI | CACGTG | 2 cut(s) | 1193, 1211 |
| BbvI | GCAGC | 2 cut(s) | 7, 21 |
| BceAI | ACGGC | 1 cut(s) | 1227 |
| BciT130I | CCWGG | 1 cut(s) | 627 |
| BcoDI | GTCTC | 2 cut(s) | 732, 958 |
| BfaI | CTAG | 5 cut(s) | 6, 510, 710, 755, 1287 |
| BfmI | CTRYAG | 1 cut(s) | 651 |
| BfoI | RGCGCY | 2 cut(s) | 688, 755 |
| BisI | GCNGC | 4 cut(s) | 10, 13, 21, 683 |
| BlnI | CCTAGG | 1 cut(s) | 1286 |
| BlsI | GCNGC | 4 cut(s) | 11, 14, 22, 684 |
| Bme1390I | CCNGG | 1 cut(s) | 627 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 838 |
| BmeT110I | CYCGRG | 1 cut(s) | 735 |
| BmgT120I | GGNCC | 2 cut(s) | 1020, 1240 |
| BmiI | GGNNCC | 2 cut(s) | 686, 1030 |
| BmrFI | CCNGG | 1 cut(s) | 627 |
| BmsI | GCATC | 3 cut(s) | 669, 721, 1263 |
| BsaAI | YACGTR | 2 cut(s) | 1193, 1211 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaI | GGTCTC | 1 cut(s) | 732 |
| BsaJI | CCNNGG | 3 cut(s) | 292, 1243, 1286 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1303 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 559, 626, 888, 1070, 1071, 1212, 1288, 1304 |
| BseBI | CCWGG | 1 cut(s) | 627 |
| BseDI | CCNNGG | 3 cut(s) | 292, 1243, 1286 |
| BseGI | GGATG | 2 cut(s) | 501, 993 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 559, 626, 888, 1070, 1071, 1212, 1288, 1304 |
| BseMII | CTCAG | 2 cut(s) | 718, 969 |
| BseXI | GCAGC | 2 cut(s) | 7, 21 |
| BsgI | GTGCAG | 1 cut(s) | 1299 |
| Bsh1236I | CGCG | 1 cut(s) | 333 |
| BshFI | GGCC | 3 cut(s) | 630, 1021, 1242 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BsiHKCI | CYCGRG | 1 cut(s) | 735 |
| BsiWI | CGTACG | 1 cut(s) | 1115 |
| BslFI | GGGAC | 1 cut(s) | 1116 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 559, 626, 888, 1070, 1071, 1212, 1288, 1304 |
| BsmAI | GTCTC | 2 cut(s) | 732, 958 |
| BsmBI | CGTCTC | 1 cut(s) | 958 |
| BsmFI | GGGAC | 1 cut(s) | 1116 |
| BsnI | GGCC | 3 cut(s) | 630, 1021, 1242 |
| Bso31I | GGTCTC | 1 cut(s) | 732 |
| BsoBI | CYCGRG | 1 cut(s) | 735 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1124 |
| Bsp143I | GATC | 1 cut(s) | 421 |
| BspACI | CCGC | 6 cut(s) | 31, 314, 402, 682, 1153, 1166 |
| BspANI | GGCC | 3 cut(s) | 630, 1021, 1242 |
| BspCNI | CTCAG | 2 cut(s) | 717, 968 |
| BspFNI | CGCG | 1 cut(s) | 333 |
| BspLI | GGNNCC | 2 cut(s) | 686, 1030 |
| BspPI | GGATC | 1 cut(s) | 416 |
| BspQI | GCTCTTC | 3 cut(s) | 753, 873, 912 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 1 cut(s) | 732 |
| BsrBI | CCGCTC | 1 cut(s) | 31 |
| BssECI | CCNNGG | 3 cut(s) | 292, 1243, 1286 |
| BssMI | GATC | 1 cut(s) | 421 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| BssSI | CACGAG | 1 cut(s) | 1173 |
| BssT1I | CCWWGG | 2 cut(s) | 292, 1286 |
| Bst2BI | CACGAG | 1 cut(s) | 1173 |
| Bst2UI | CCWGG | 1 cut(s) | 627 |
| Bst6I | CTCTTC | 3 cut(s) | 753, 873, 912 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstBAI | YACGTR | 2 cut(s) | 1193, 1211 |
| BstC8I | GCNNGC | 2 cut(s) | 660, 1079 |
| BstDEI | CTNAG | 5 cut(s) | 345, 368, 392, 704, 955 |
| BstDSI | CCRYGG | 1 cut(s) | 1243 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 624 |
| BstF5I | GGATG | 2 cut(s) | 501, 993 |
| BstFNI | CGCG | 1 cut(s) | 333 |
| BstH2I | RGCGCY | 2 cut(s) | 688, 755 |
| BstHHI | GCGC | 4 cut(s) | 335, 687, 754, 1077 |
| BstKTI | GATC | 1 cut(s) | 424 |
| BstMAI | GTCTC | 2 cut(s) | 732, 958 |
| BstMBI | GATC | 1 cut(s) | 421 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 760 |
| BstNI | CCWGG | 1 cut(s) | 627 |
| BstNSI | RCATGY | 1 cut(s) | 662 |
| BstSCI | CCNGG | 1 cut(s) | 625 |
| BstSFI | CTRYAG | 1 cut(s) | 651 |
| BstUI | CGCG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 2 cut(s) | 7, 21 |
| BsuRI | GGCC | 3 cut(s) | 630, 1021, 1242 |
| BtgI | CCRYGG | 1 cut(s) | 1243 |
| BtsCI | GGATG | 2 cut(s) | 501, 993 |
| BtsIMutI | CAGTG | 1 cut(s) | 815 |
| Cac8I | GCNNGC | 2 cut(s) | 660, 1079 |
| CfoI | GCGC | 4 cut(s) | 335, 687, 754, 1077 |
| Cfr13I | GGNCC | 2 cut(s) | 1020, 1240 |
| CseI | GACGC | 1 cut(s) | 1027 |
| Csp6I | GTAC | 1 cut(s) | 1116 |
| CviAII | CATG | 3 cut(s) | 659, 883, 1304 |
| CviQI | GTAC | 1 cut(s) | 1116 |
| DdeI | CTNAG | 5 cut(s) | 345, 368, 392, 704, 955 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 1 cut(s) | 423 |
| DpnII | GATC | 1 cut(s) | 421 |
| DraI | TTTAAA | 1 cut(s) | 459 |
| DraIII | CACNNNGTG | 1 cut(s) | 1196 |
| DriI | GACNNNNNGTC | 1 cut(s) | 838 |
| Eam1104I | CTCTTC | 3 cut(s) | 753, 873, 912 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 838 |
| EarI | CTCTTC | 3 cut(s) | 753, 873, 912 |
| Eco130I | CCWWGG | 2 cut(s) | 292, 1286 |
| Eco147I | AGGCCT | 1 cut(s) | 630 |
| Eco24I | GRGCYC | 1 cut(s) | 1124 |
| Eco31I | GGTCTC | 1 cut(s) | 732 |
| Eco47III | AGCGCT | 1 cut(s) | 753 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| Eco72I | CACGTG | 2 cut(s) | 1193, 1211 |
| Eco88I | CYCGRG | 1 cut(s) | 735 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 624 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 625 |
| EcoT14I | CCWWGG | 2 cut(s) | 292, 1286 |
| EcoT38I | GRGCYC | 1 cut(s) | 1124 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| ErhI | CCWWGG | 2 cut(s) | 292, 1286 |
| Esp3I | CGTCTC | 1 cut(s) | 958 |
| FaeI | CATG | 3 cut(s) | 662, 886, 1307 |
| FaqI | GGGAC | 1 cut(s) | 1116 |
| FatI | CATG | 3 cut(s) | 658, 882, 1303 |
| FauNDI | CATATG | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 4 cut(s) | 10, 13, 21, 683 |
| FokI | GGATG | 2 cut(s) | 508, 980 |
| FriOI | GRGCYC | 1 cut(s) | 1124 |
| Fsp4HI | GCNGC | 4 cut(s) | 10, 13, 21, 683 |
| FspBI | CTAG | 5 cut(s) | 6, 510, 710, 755, 1287 |
| GlaI | GCGC | 4 cut(s) | 334, 686, 753, 1076 |
| GluI | GCNGC | 4 cut(s) | 10, 13, 21, 683 |
| HaeII | RGCGCY | 2 cut(s) | 688, 755 |
| HaeIII | GGCC | 3 cut(s) | 630, 1021, 1242 |
| HgaI | GACGC | 1 cut(s) | 1027 |
| HhaI | GCGC | 4 cut(s) | 335, 687, 754, 1077 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 3 cut(s) | 662, 886, 1307 |
| Hin6I | GCGC | 4 cut(s) | 333, 685, 752, 1075 |
| HinP1I | GCGC | 4 cut(s) | 333, 685, 752, 1075 |
| HinfI | GANTC | 2 cut(s) | 513, 533 |
| HphI | GGTGA | 1 cut(s) | 1232 |
| Hpy188III | TCNNGA | 4 cut(s) | 493, 591, 676, 737 |
| HpyAV | CCTTC | 2 cut(s) | 796, 796 |
| HpyCH4IV | ACGT | 3 cut(s) | 570, 1192, 1210 |
| HpyCH4V | TGCA | 5 cut(s) | 662, 848, 899, 1061, 1316 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 760 |
| HpyF3I | CTNAG | 5 cut(s) | 345, 368, 392, 704, 955 |
| HpySE526I | ACGT | 3 cut(s) | 570, 1192, 1210 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 3 cut(s) | 662, 886, 1307 |
| HspAI | GCGC | 4 cut(s) | 333, 685, 752, 1075 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kzo9I | GATC | 1 cut(s) | 421 |
| LguI | GCTCTTC | 3 cut(s) | 753, 873, 912 |
| LmnI | GCTCC | 1 cut(s) | 622 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 21 |
| LweI | GCATC | 3 cut(s) | 669, 721, 1263 |
| MaeI | CTAG | 5 cut(s) | 6, 510, 710, 755, 1287 |
| MaeII | ACGT | 3 cut(s) | 570, 1192, 1210 |
| MaeIII | GTNAC | 2 cut(s) | 562, 1277 |
| MalI | GATC | 1 cut(s) | 423 |
| MbiI | CCGCTC | 1 cut(s) | 31 |
| MboI | GATC | 1 cut(s) | 421 |
| MboII | GAAGA | 6 cut(s) | 471, 481, 770, 860, 926, 929 |
| MhlI | GDGCHC | 1 cut(s) | 1124 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 2 cut(s) | 507, 527 |
| MmeI | TCCRAC | 7 cut(s) | 74, 120, 154, 199, 256, 664, 855 |
| MroXI | GAANNNNTTC | 1 cut(s) | 867 |
| MseI | TTAA | 2 cut(s) | 458, 837 |
| MspA1I | CMGCKG | 1 cut(s) | 12 |
| MspR9I | CCNGG | 1 cut(s) | 627 |
| MssI | GTTTAAAC | 1 cut(s) | 459 |
| MvaI | CCWGG | 1 cut(s) | 627 |
| MvnI | CGCG | 1 cut(s) | 333 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 760 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 690 |
| NdeII | GATC | 1 cut(s) | 421 |
| NlaIII | CATG | 3 cut(s) | 662, 886, 1307 |
| NlaIV | GGNNCC | 2 cut(s) | 686, 1030 |
| NmeAIII | GCCGAG | 1 cut(s) | 41 |
| NspI | RCATGY | 1 cut(s) | 662 |
| PaeI | GCATGC | 1 cut(s) | 662 |
| PaeR7I | CTCGAG | 1 cut(s) | 735 |
| PceI | AGGCCT | 1 cut(s) | 630 |
| PciSI | GCTCTTC | 3 cut(s) | 753, 873, 912 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 867 |
| Pfl23II | CGTACG | 1 cut(s) | 1115 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1304 |
| PkrI | GCNGC | 4 cut(s) | 11, 14, 22, 684 |
| PleI | GAGTC | 2 cut(s) | 507, 527 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PmaCI | CACGTG | 2 cut(s) | 1193, 1211 |
| PmeI | GTTTAAAC | 1 cut(s) | 459 |
| PmlI | CACGTG | 2 cut(s) | 1193, 1211 |
| PpsI | GAGTC | 2 cut(s) | 507, 527 |
| Ppu21I | YACGTR | 2 cut(s) | 1193, 1211 |
| PsiI | TTATAA | 1 cut(s) | 1056 |
| Psp6I | CCWGG | 1 cut(s) | 625 |
| PspCI | CACGTG | 2 cut(s) | 1193, 1211 |
| PspGI | CCWGG | 1 cut(s) | 625 |
| PspLI | CGTACG | 1 cut(s) | 1115 |
| PspN4I | GGNNCC | 2 cut(s) | 686, 1030 |
| PspPI | GGNCC | 2 cut(s) | 1020, 1240 |
| PvuII | CAGCTG | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 1117 |
| RsaNI | GTAC | 1 cut(s) | 1116 |
| SapI | GCTCTTC | 3 cut(s) | 753, 873, 912 |
| SaqAI | TTAA | 2 cut(s) | 458, 837 |
| SatI | GCNGC | 4 cut(s) | 10, 13, 21, 683 |
| Sau3AI | GATC | 1 cut(s) | 421 |
| Sau96I | GGNCC | 2 cut(s) | 1020, 1240 |
| SchI | GAGTC | 2 cut(s) | 507, 527 |
| ScrFI | CCNGG | 1 cut(s) | 627 |
| SduI | GDGCHC | 1 cut(s) | 1124 |
| SfaNI | GCATC | 3 cut(s) | 669, 721, 1263 |
| SfcI | CTRYAG | 1 cut(s) | 651 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| Sfr274I | CTCGAG | 1 cut(s) | 735 |
| SlaI | CTCGAG | 1 cut(s) | 735 |
| SmlI | CTYRAG | 1 cut(s) | 735 |
| SmoI | CTYRAG | 1 cut(s) | 735 |
| SphI | GCATGC | 1 cut(s) | 662 |
| SseBI | AGGCCT | 1 cut(s) | 630 |
| SsiI | CCGC | 6 cut(s) | 31, 314, 402, 682, 1153, 1166 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspI | AATATT | 3 cut(s) | 285, 384, 600 |
| SspMI | CTAG | 5 cut(s) | 6, 510, 710, 755, 1287 |
| StuI | AGGCCT | 1 cut(s) | 630 |
| StyD4I | CCNGG | 1 cut(s) | 625 |
| StyI | CCWWGG | 2 cut(s) | 292, 1286 |
| TaiI | ACGT | 3 cut(s) | 573, 1195, 1213 |
| TaqI | TCGA | 6 cut(s) | 27, 153, 500, 516, 677, 736 |
| TauI | GCSGC | 1 cut(s) | 685 |
| Tru1I | TTAA | 2 cut(s) | 458, 837 |
| Tru9I | TTAA | 2 cut(s) | 458, 837 |
| TscAI | CASTG | 1 cut(s) | 815 |
| TseI | GCWGC | 3 cut(s) | 9, 12, 20 |
| TspDTI | ATGAA | 3 cut(s) | 367, 378, 519 |
| TspGWI | ACGGA | 2 cut(s) | 581, 1031 |
| TspRI | CASTG | 1 cut(s) | 815 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1304 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 624 |
| XapI | RAATTY | 3 cut(s) | 271, 317, 327 |
| XceI | RCATGY | 1 cut(s) | 662 |
| XhoI | CTCGAG | 1 cut(s) | 735 |
| XmaJI | CCTAGG | 1 cut(s) | 1286 |
| XmnI | GAANNNNTTC | 1 cut(s) | 867 |
| XspI | CTAG | 5 cut(s) | 6, 510, 710, 755, 1287 |