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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 582, 627 |
| Acc65I | GGTACC | 1 cut(s) | 118 |
| AccB1I | GGYRCC | 1 cut(s) | 118 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 1 cut(s) | 658 |
| AclI | AACGTT | 1 cut(s) | 265 |
| AclWI | GGATC | 3 cut(s) | 94, 107, 515 |
| AfaI | GTAC | 3 cut(s) | 120, 218, 494 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 390, 644, 645 |
| AgsI | TTSAA | 6 cut(s) | 39, 142, 304, 311, 340, 599 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 407 |
| AjnI | CCWGG | 1 cut(s) | 279 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AluBI | AGCT | 3 cut(s) | 368, 424, 526 |
| AluI | AGCT | 3 cut(s) | 368, 424, 526 |
| Alw26I | GTCTC | 2 cut(s) | 178, 460 |
| AlwI | GGATC | 3 cut(s) | 94, 107, 515 |
| AoxI | GGCC | 1 cut(s) | 590 |
| ApaI | GGGCCC | 1 cut(s) | 594 |
| AseI | ATTAAT | 1 cut(s) | 531 |
| Asp718I | GGTACC | 1 cut(s) | 118 |
| AspLEI | GCGC | 1 cut(s) | 651 |
| AspS9I | GGNCC | 2 cut(s) | 590, 591 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 500 |
| AsuII | TTCGAA | 1 cut(s) | 92 |
| BaeGI | GKGCMC | 1 cut(s) | 594 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 118 |
| BanII | GRGCYC | 1 cut(s) | 594 |
| BauI | CACGAG | 1 cut(s) | 614 |
| BccI | CCATC | 2 cut(s) | 90, 353 |
| BciT130I | CCWGG | 1 cut(s) | 281 |
| BciVI | GTATCC | 1 cut(s) | 481 |
| BclI | TGATCA | 1 cut(s) | 225 |
| BcoDI | GTCTC | 2 cut(s) | 178, 460 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 1 cut(s) | 543 |
| BfuI | GTATCC | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 1 cut(s) | 281 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 2 cut(s) | 590, 591 |
| BmiI | GGNNCC | 4 cut(s) | 101, 120, 592, 662 |
| BmrFI | CCNGG | 1 cut(s) | 281 |
| BmsI | GCATC | 1 cut(s) | 223 |
| Bpu14I | TTCGAA | 1 cut(s) | 92 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 390, 644, 645 |
| Bse1I | ACTGG | 2 cut(s) | 46, 261 |
| Bse3DI | GCAATG | 1 cut(s) | 165 |
| BseBI | CCWGG | 1 cut(s) | 281 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 390, 644, 645 |
| BseMI | GCAATG | 1 cut(s) | 165 |
| BseMII | CTCAG | 2 cut(s) | 120, 471 |
| BseNI | ACTGG | 2 cut(s) | 46, 261 |
| BseRI | GAGGAG | 1 cut(s) | 281 |
| BseSI | GKGCMC | 1 cut(s) | 594 |
| BshFI | GGCC | 1 cut(s) | 592 |
| BshNI | GGYRCC | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 390, 644, 645 |
| BsmAI | GTCTC | 2 cut(s) | 178, 460 |
| BsmBI | CGTCTC | 1 cut(s) | 460 |
| BsnI | GGCC | 1 cut(s) | 592 |
| Bsp119I | TTCGAA | 1 cut(s) | 92 |
| Bsp120I | GGGCCC | 1 cut(s) | 590 |
| Bsp1286I | GDGCHC | 1 cut(s) | 594 |
| Bsp143I | GATC | 3 cut(s) | 99, 225, 507 |
| BspACI | CCGC | 1 cut(s) | 658 |
| BspANI | GGCC | 1 cut(s) | 592 |
| BspCNI | CTCAG | 2 cut(s) | 121, 470 |
| BspHI | TCATGA | 1 cut(s) | 510 |
| BspLI | GGNNCC | 4 cut(s) | 101, 120, 592, 662 |
| BspPI | GGATC | 3 cut(s) | 94, 107, 515 |
| BspT104I | TTCGAA | 1 cut(s) | 92 |
| BspT107I | GGYRCC | 1 cut(s) | 118 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 165 |
| BsrI | ACTGG | 2 cut(s) | 46, 261 |
| BssMI | GATC | 3 cut(s) | 99, 225, 507 |
| BssSI | CACGAG | 1 cut(s) | 614 |
| Bst2BI | CACGAG | 1 cut(s) | 614 |
| Bst2UI | CCWGG | 1 cut(s) | 281 |
| BstBI | TTCGAA | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 3 cut(s) | 129, 457, 603 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstHHI | GCGC | 1 cut(s) | 651 |
| BstKTI | GATC | 3 cut(s) | 102, 228, 510 |
| BstMAI | GTCTC | 2 cut(s) | 178, 460 |
| BstMBI | GATC | 3 cut(s) | 99, 225, 507 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 655 |
| BstNI | CCWGG | 1 cut(s) | 281 |
| BstSCI | CCNGG | 1 cut(s) | 279 |
| BstSFI | CTRYAG | 1 cut(s) | 543 |
| BstSLI | GKGCMC | 1 cut(s) | 594 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuI | GTATCC | 1 cut(s) | 481 |
| BsuRI | GGCC | 1 cut(s) | 592 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| BtsIMutI | CAGTG | 1 cut(s) | 254 |
| Cac8I | GCNNGC | 1 cut(s) | 320 |
| CciI | TCATGA | 1 cut(s) | 510 |
| CfoI | GCGC | 1 cut(s) | 651 |
| Cfr13I | GGNCC | 2 cut(s) | 590, 591 |
| Csp6I | GTAC | 3 cut(s) | 119, 217, 493 |
| CviAII | CATG | 5 cut(s) | 193, 220, 511, 538, 557 |
| CviJI | RGCY | 6 cut(s) | 45, 322, 368, 424, 526, 592 |
| CviKI_1 | RGCY | 6 cut(s) | 45, 322, 368, 424, 526, 592 |
| CviQI | GTAC | 3 cut(s) | 119, 217, 493 |
| DdeI | CTNAG | 3 cut(s) | 129, 457, 603 |
| DpnI | GATC | 3 cut(s) | 101, 227, 509 |
| DpnII | GATC | 3 cut(s) | 99, 225, 507 |
| DriI | GACNNNNNGTC | 1 cut(s) | 407 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 1 cut(s) | 594 |
| EcoO109I | RGGNCCY | 1 cut(s) | 590 |
| EcoRII | CCWGG | 1 cut(s) | 279 |
| EcoT38I | GRGCYC | 1 cut(s) | 594 |
| Esp3I | CGTCTC | 1 cut(s) | 460 |
| FaeI | CATG | 5 cut(s) | 196, 223, 514, 541, 560 |
| FatI | CATG | 5 cut(s) | 192, 219, 510, 537, 556 |
| FauNDI | CATATG | 1 cut(s) | 70 |
| FbaI | TGATCA | 1 cut(s) | 225 |
| FokI | GGATG | 1 cut(s) | 245 |
| FriOI | GRGCYC | 1 cut(s) | 594 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GlaI | GCGC | 1 cut(s) | 650 |
| HaeIII | GGCC | 1 cut(s) | 592 |
| HhaI | GCGC | 1 cut(s) | 651 |
| Hin1II | CATG | 5 cut(s) | 196, 223, 514, 541, 560 |
| Hin6I | GCGC | 1 cut(s) | 649 |
| HinP1I | GCGC | 1 cut(s) | 649 |
| HinfI | GANTC | 3 cut(s) | 35, 186, 284 |
| HphI | GGTGA | 2 cut(s) | 235, 500 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 401, 613 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 209, 352, 364 |
| Hpy188III | TCNNGA | 3 cut(s) | 511, 571, 614 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 401, 613 |
| HpyAV | CCTTC | 2 cut(s) | 298, 457 |
| HpyCH4IV | ACGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 4 cut(s) | 170, 254, 500, 635 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 655 |
| HpyF3I | CTNAG | 3 cut(s) | 129, 457, 603 |
| HpySE526I | ACGT | 1 cut(s) | 265 |
| Hsp92II | CATG | 5 cut(s) | 196, 223, 514, 541, 560 |
| HspAI | GCGC | 1 cut(s) | 649 |
| KpnI | GGTACC | 1 cut(s) | 122 |
| Ksp22I | TGATCA | 1 cut(s) | 225 |
| Kzo9I | GATC | 3 cut(s) | 99, 225, 507 |
| LmnI | GCTCC | 2 cut(s) | 315, 655 |
| LpnPI | CCDG | 9 cut(s) | 27, 101, 141, 242, 266, 293, 304, 486, 573 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeII | ACGT | 1 cut(s) | 265 |
| MaeIII | GTNAC | 1 cut(s) | 409 |
| MalI | GATC | 3 cut(s) | 101, 227, 509 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 3 cut(s) | 99, 225, 507 |
| MboII | GAAGA | 2 cut(s) | 272, 586 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MhlI | GDGCHC | 1 cut(s) | 594 |
| MluCI | AATT | 7 cut(s) | 111, 326, 426, 528, 577, 583, 622 |
| MlyI | GAGTC | 1 cut(s) | 180 |
| MnlI | CCTC | 6 cut(s) | 299, 302, 386, 507, 610, 638 |
| MseI | TTAA | 3 cut(s) | 531, 549, 672 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 569 |
| MspR9I | CCNGG | 1 cut(s) | 281 |
| MvaI | CCWGG | 1 cut(s) | 281 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 655 |
| NdeI | CATATG | 1 cut(s) | 70 |
| NdeII | GATC | 3 cut(s) | 99, 225, 507 |
| NlaIII | CATG | 5 cut(s) | 196, 223, 514, 541, 560 |
| NlaIV | GGNNCC | 4 cut(s) | 101, 120, 592, 662 |
| NmuCI | GTSAC | 1 cut(s) | 409 |
| NspV | TTCGAA | 1 cut(s) | 92 |
| PagI | TCATGA | 1 cut(s) | 510 |
| PfeI | GAWTC | 2 cut(s) | 35, 284 |
| PfoI | TCCNGGA | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 180 |
| PpsI | GAGTC | 1 cut(s) | 180 |
| PshBI | ATTAAT | 1 cut(s) | 531 |
| PsiI | TTATAA | 2 cut(s) | 582, 627 |
| Psp1406I | AACGTT | 1 cut(s) | 265 |
| Psp6I | CCWGG | 1 cut(s) | 279 |
| PspGI | CCWGG | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 4 cut(s) | 101, 120, 592, 662 |
| PspOMI | GGGCCC | 1 cut(s) | 590 |
| PspPI | GGNCC | 2 cut(s) | 590, 591 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| RsaI | GTAC | 3 cut(s) | 120, 218, 494 |
| RsaNI | GTAC | 3 cut(s) | 119, 217, 493 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 569 |
| SaqAI | TTAA | 3 cut(s) | 531, 549, 672 |
| Sau3AI | GATC | 3 cut(s) | 99, 225, 507 |
| Sau96I | GGNCC | 2 cut(s) | 590, 591 |
| SchI | GAGTC | 1 cut(s) | 180 |
| ScrFI | CCNGG | 1 cut(s) | 281 |
| SduI | GDGCHC | 1 cut(s) | 594 |
| SetI | ASST | 8 cut(s) | 120, 268, 309, 370, 426, 449, 518, 528 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfcI | CTRYAG | 1 cut(s) | 543 |
| SfuI | TTCGAA | 1 cut(s) | 92 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 569 |
| Sse9I | AATT | 7 cut(s) | 111, 326, 426, 528, 577, 583, 622 |
| SsiI | CCGC | 1 cut(s) | 658 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StyD4I | CCNGG | 1 cut(s) | 279 |
| TaiI | ACGT | 1 cut(s) | 268 |
| TaqI | TCGA | 2 cut(s) | 5, 92 |
| TasI | AATT | 7 cut(s) | 111, 326, 426, 528, 577, 583, 622 |
| TatI | WGTACW | 2 cut(s) | 216, 492 |
| TfiI | GAWTC | 2 cut(s) | 35, 284 |
| Tru1I | TTAA | 3 cut(s) | 531, 549, 672 |
| Tru9I | TTAA | 3 cut(s) | 531, 549, 672 |
| TscAI | CASTG | 1 cut(s) | 261 |
| TseFI | GTSAC | 1 cut(s) | 409 |
| Tsp45I | GTSAC | 1 cut(s) | 409 |
| TspDTI | ATGAA | 2 cut(s) | 124, 509 |
| TspGWI | ACGGA | 1 cut(s) | 520 |
| TspRI | CASTG | 1 cut(s) | 261 |
| VspI | ATTAAT | 1 cut(s) | 531 |
| XspI | CTAG | 1 cut(s) | 237 |