Rh2BG080700

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002448
Physical Location & Seq
Forward (+)
6198422 .. 6202056
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG080700.1

Sequence Viewer

Length: 954 bp
ATGGTGTATATATGCAGTGCTTTTATTCAGGAGTTTAGGAACTGGGACTCCGCTTGGGCTTTACAAGCATTGTATGTGATGGTTTATGAAATCAGGGTTCTAGCTGAGAGGGCTGATAAGGAATTGGCGACGAATGAGAAATCCCCGGAGAAGTTGAAGGGAGCTGGCTCTTTCCTTATGAAAGTATTTGGGGTTCTTGCTGGTAAAGGCCCAAAACGTGTAGGAGCATTATACGTGACTTGCCAGTTGTTTAAAGTTTACTTTAAGCTTGGTACAGTTCACCTTTGTCGCAGTGTGATAAGGAGTATTGAAACTGCACGTATATTTGATTTTGAGGAATTCCCCAAGAGAGATAAGGTTACCTATATGTATTATACAGGCCGTCTAGAGGTTTTCAATGAAAACTTTCCTGCTGCTGATGATAAATTGTCCTATGCCTTGAAGCATTGCAACCCTCGGAATGAAGCAAATATAAGGATGATATTGAAATATTTGATACCTGTCAAGCTTTCAATTGGCATCATACCAACCGATTGGCTTCTGCAAAAGTATAACTTGGTGGAGTATAGCAATGTTGTGCAAGCTCTAAGAAGAGGTGACCTCCGACTTCTTCGGCATGCTCTTCAAGAGCACGAAGACAGGTTCTTGAGATCTGGCGTATATCTCGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAATTTACATTATCCAAAAGCAAAAGGACCCGAGCAAAGCTCACCAGCTGAAGTTGGAAATAATTGTCAAAGCATTGAAATGGCTTGAAATGGACATTGATGTGGATGAGGTGGAGTGCATAATGGCAATACTAATATACAAAAGTCTGGTAAAGGGATACTTTGCACACAAGAGTAAAGTTGTGGTTTTAAGCAAGCAAGATCCTTTCCCCAAGTTAAATGGAAAGCCTGTGAATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

317

Amino Acids

36.88

Weight (kDa)

9.43

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 208 - 303 2.2e-06 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 3 cut(s) 338, 714, 946
AcuI CTGAAG 2 cut(s) 671, 782
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 32, 64
AluBI AGCT 8 cut(s) 104, 164, 268, 508, 584, 679, 752, 760
AluI AGCT 8 cut(s) 104, 164, 268, 508, 584, 679, 752, 760
Alw21I GWGCWC 1 cut(s) 633
AlwI GGATC 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 2 cut(s) 208, 379
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 3 cut(s) 338, 714, 946
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 209, 739
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 272, 608, 746
AvaI CYCGRG 1 cut(s) 742
AvaII GGWCC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 366
BciVI GTATCC 1 cut(s) 863
BcnI CCSGG 1 cut(s) 146
BfaI CTAG 4 cut(s) 101, 386, 671, 680
BfuI GTATCC 1 cut(s) 863
BglII AGATCT 1 cut(s) 650
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 209, 739
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 642
BplI GAGNNNNNCTC 4 cut(s) 585, 617, 736, 768
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 2 cut(s) 235, 320
BsaJI CCNNGG 2 cut(s) 144, 455
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 47, 244
Bse3DI GCAATG 2 cut(s) 445, 577
BseDI CCNNGG 2 cut(s) 144, 455
BseGI GGATG 2 cut(s) 483, 823
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 445, 577
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 47, 244
BseXI GCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 2 cut(s) 210, 381
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 210, 381
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 2 cut(s) 650, 913
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 210, 381
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 741
BspPI GGATC 1 cut(s) 908
BspQI GCTCTTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 445, 577
BsrI ACTGG 2 cut(s) 47, 244
BssECI CCNNGG 2 cut(s) 144, 455
BssMI GATC 2 cut(s) 650, 913
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 586, 627
BstBAI YACGTR 2 cut(s) 235, 320
BstC8I GCNNGC 4 cut(s) 166, 582, 618, 908
BstDEI CTNAG 2 cut(s) 105, 587
BstEII GGTNACC 2 cut(s) 358, 596
BstF5I GGATG 2 cut(s) 483, 823
BstKTI GATC 2 cut(s) 653, 916
BstMBI GATC 2 cut(s) 650, 913
BstMWI GCNNNNNNNGC 2 cut(s) 65, 110
BstNSI RCATGY 1 cut(s) 620
BstPI GGTNACC 2 cut(s) 358, 596
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 650, 913
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 2 cut(s) 650, 913
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 2 cut(s) 210, 381
BtsCI GGATG 2 cut(s) 483, 823
BtsI GCAGTG 2 cut(s) 22, 298
BtsIMutI CAGTG 2 cut(s) 22, 298
Cac8I GCNNGC 4 cut(s) 166, 582, 618, 908
Cfr13I GGNCC 2 cut(s) 209, 739
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 617
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 105, 587
DpnI GATC 2 cut(s) 652, 915
DpnII GATC 2 cut(s) 650, 913
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 586, 627
EarI CTCTTC 2 cut(s) 586, 627
Eco47I GGWCC 1 cut(s) 739
Eco57I CTGAAG 2 cut(s) 671, 782
Eco88I CYCGRG 1 cut(s) 742
Eco91I GGTNACC 2 cut(s) 358, 596
EcoO109I RGGNCCY 1 cut(s) 739
EcoO65I GGTNACC 2 cut(s) 358, 596
EcoRI GAATTC 2 cut(s) 338, 946
FaeI CATG 1 cut(s) 620
FalI AAGNNNNNCTT 4 cut(s) 539, 571, 857, 889
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 616
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 2 cut(s) 490, 830
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 4 cut(s) 101, 386, 671, 680
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 2 cut(s) 210, 381
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 620
HindIII AAGCTT 2 cut(s) 266, 506
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 272, 608, 746
Hpy166II GTNNAC 2 cut(s) 259, 280
Hpy188I TCNGA 3 cut(s) 459, 605, 699
Hpy188III TCNNGA 4 cut(s) 29, 386, 626, 646
Hpy8I GTNNAC 2 cut(s) 259, 280
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 3 cut(s) 217, 234, 319
HpyCH4V TGCA 7 cut(s) 15, 317, 450, 544, 580, 831, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 110
HpyF3I CTNAG 2 cut(s) 105, 587
HpySE526I ACGT 3 cut(s) 217, 234, 319
Hsp92II CATG 1 cut(s) 620
Kzo9I GATC 2 cut(s) 650, 913
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 2 cut(s) 161, 224
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 528
MaeI CTAG 4 cut(s) 101, 386, 671, 680
MaeII ACGT 3 cut(s) 217, 234, 319
MaeIII GTNAC 3 cut(s) 235, 358, 596
MalI GATC 2 cut(s) 652, 915
MboI GATC 2 cut(s) 650, 913
MboII GAAGA 4 cut(s) 602, 603, 614, 647
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 2 cut(s) 650, 913
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 7 cut(s) 122, 338, 425, 513, 714, 774, 946
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 628, 747
MnlI CCTC 7 cut(s) 102, 328, 382, 465, 587, 611, 814
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 4 cut(s) 252, 264, 902, 929
MslI CAYNNNNRTG 2 cut(s) 790, 812
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 513
MwoI GCNNNNNNNGC 2 cut(s) 65, 110
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 650, 913
NlaIII CATG 1 cut(s) 620
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 2 cut(s) 235, 596
NspI RCATGY 1 cut(s) 620
PaeI GCATGC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Ppu21I YACGTR 2 cut(s) 235, 320
PpuMI RGGWCCY 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 739
PspEI GGTNACC 2 cut(s) 358, 596
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 2 cut(s) 209, 739
PspPPI RGGWCCY 1 cut(s) 739
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PsuI RGATCY 2 cut(s) 650, 913
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 2 cut(s) 790, 812
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 4 cut(s) 252, 264, 902, 929
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 2 cut(s) 650, 913
Sau96I GGNCC 2 cut(s) 209, 739
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 633
SfaNI GCATC 1 cut(s) 528
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 2 cut(s) 790, 812
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
SphI GCATGC 1 cut(s) 620
Sse9I AATT 7 cut(s) 122, 338, 425, 513, 714, 774, 946
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 491
SspMI CTAG 4 cut(s) 101, 386, 671, 680
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 3 cut(s) 220, 237, 322
TasI AATT 7 cut(s) 122, 338, 425, 513, 714, 774, 946
Tru1I TTAA 4 cut(s) 252, 264, 902, 929
Tru9I TTAA 4 cut(s) 252, 264, 902, 929
TscAI CASTG 2 cut(s) 22, 298
TseFI GTSAC 2 cut(s) 235, 596
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 2 cut(s) 235, 596
TspDTI ATGAA 4 cut(s) 102, 194, 414, 477
TspRI CASTG 2 cut(s) 22, 298
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 3 cut(s) 338, 714, 946
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 4 cut(s) 101, 386, 671, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.