Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Forward (+)

52012143 .. 52016858

Gene Structure 4716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1418700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGAGCAGTAACAATGGAAGCGGAGGAGAAGGAGGAGATCCGCCGCTTAAGCAATTGGCGGAGCTTGGCAAAACCCTAAAAGAAGGGGAGAGGCTTCTGGCGCCAACCCGACGACCCGACGGTACGCTCCGTAAACCAATCCGCATTCGGGCTGGATATGTCCCCCAAGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGGCCTCAGCGGCTGGACCGCCGGGTTATGATGATAATTCCGTTGATACAACGAAACCCAAGACTAAGTCTGTAAAGAGGAACGAAAGAAAAAAGGAGAAGCGGATACAGGCTGCTCTTGAGAAGGAGAAAACCTCGGAAAGTGGGGAAACAAAGGAAGAAGAAGTTGAAAATTTGGGTCATGTATCAGAAGCTGTTGAGTCATTGGCATCTCAGATGAACGAGCTAGGTGTTTCTTCTAGTCCTTTAGTTACCCCTCCCTCTGACTCAACTGAGAATTCATGTCCAGCAGGTCCAGCTCAAGATATAGATAAAAGAATTCGAGCTCTTAAAAAGAAGATTCGACTTGCAGAAGCTCAACAGCAGAAAACTAATCAGCAAGATGTTAAGTCAGAACAGTTGGACAAGTTGACGAAACTGGAAGGTTGGCGTAAGGAGCTAAAGCTTTTGGAGGATAAAAAGAAGGCGGAGTCGGCTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

235

Amino Acids

25.64

Weight (kDa)

9.07

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago-bind	PF09282	30 - 56	1.2e-12	Mago binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	9 cut(s)	24, 44, 47, 62, 145, 230, 239, 322, 686
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	3 cut(s)	391, 496, 537
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	151, 172
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	8 cut(s)	67, 413, 445, 518, 545, 575, 658, 664
AluI	AGCT	8 cut(s)	67, 413, 445, 518, 545, 575, 658, 664
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	2 cut(s)	233, 413
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	332, 695
ApoI	RAATTY	3 cut(s)	391, 496, 537
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	236, 512
AsuC2I	CCSGG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	236, 512
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BbvCI	CCTCAGC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	319, 682
BccI	CCATC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	2 cut(s)	446, 459
BfoI	RGCGCY	1 cut(s)	107
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	4 cut(s)	47, 231, 333, 696
BlsI	GCNGC	4 cut(s)	48, 232, 334, 697
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	236, 512
BmgT120I	GGNCC	2 cut(s)	236, 512
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	437
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 338, 370
Bpu10I	CCTNAGC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	359, 504
BpuMI	CCSGG	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 172
Bse1I	ACTGG	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	151, 172
BseMII	CTCAG	3 cut(s)	240, 446, 483
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	2 cut(s)	42, 51
BseXI	GCAGC	2 cut(s)	319, 682
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	151, 172
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	9 cut(s)	24, 44, 47, 62, 145, 230, 239, 322, 686
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	3 cut(s)	239, 445, 484
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	125, 618
BstACI	GRCGYC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	226, 285, 432, 492
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 103, 230, 515, 655, 692
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	319, 682
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	2 cut(s)	233, 413
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	236, 512
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	401, 501
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	4 cut(s)	226, 285, 432, 492
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EciI	GGCGGA	3 cut(s)	33, 77, 701
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	236, 512
Eco53kI	GAGCTC	1 cut(s)	545
EcoICRI	GAGCTC	1 cut(s)	545
EcoRI	GAATTC	2 cut(s)	496, 537
EcoT38I	GRGCYC	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	2 cut(s)	404, 504
FaiI	YATR	5 cut(s)	162, 249, 402, 502, 527
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	400, 500
Fnu4HI	GCNGC	4 cut(s)	47, 231, 333, 696
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	4 cut(s)	47, 231, 333, 696
FspBI	CTAG	2 cut(s)	446, 459
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	4 cut(s)	47, 231, 333, 696
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	404, 504
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	419, 485, 559, 689
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	137, 630
Hpy188I	TCNGA	5 cut(s)	358, 409, 435, 484, 613
Hpy188III	TCNNGA	2 cut(s)	338, 521
Hpy8I	GTNNAC	2 cut(s)	137, 630
Hpy99I	CGWCG	2 cut(s)	117, 125
HpyAV	CCTTC	5 cut(s)	26, 80, 337, 635, 676
HpyCH4III	ACNGT	2 cut(s)	125, 618
HpyCH4V	TGCA	2 cut(s)	569, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 103, 230, 515, 655, 692
HpyF3I	CTNAG	4 cut(s)	226, 285, 432, 492
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	404, 504
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	64, 135, 655
LpnPI	CCDG	9 cut(s)	86, 141, 219, 255, 314, 495, 519, 528, 623
Lsp1109I	GCAGC	2 cut(s)	319, 682
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	2 cut(s)	446, 459
MaeIII	GTNAC	2 cut(s)	11, 469
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	389, 392, 447, 568
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	5 cut(s)	56, 256, 391, 496, 537
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	3 cut(s)	428, 479, 698
MmeI	TCCRAC	1 cut(s)	600
MseI	TTAA	3 cut(s)	51, 549, 606
MspA1I	CMGCKG	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	52, 103, 230, 515, 655, 692
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	404, 504
NlaIV	GGNNCC	1 cut(s)	105
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	48, 232, 334, 697
PleI	GAGTC	3 cut(s)	427, 479, 697
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	3 cut(s)	427, 479, 697
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	236, 512
PstNI	CAGNNNCTG	2 cut(s)	233, 413
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	51, 549, 606
SatI	GCNGC	4 cut(s)	47, 231, 333, 696
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	236, 512
SchI	GAGTC	3 cut(s)	428, 479, 698
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	437
SfoI	GGCGCC	1 cut(s)	105
SinI	GGWCC	2 cut(s)	236, 512
SmlI	CTYRAG	3 cut(s)	50, 338, 519
SmoI	CTYRAG	3 cut(s)	50, 338, 519
Sse9I	AATT	5 cut(s)	56, 256, 391, 496, 537
SsiI	CCGC	9 cut(s)	24, 44, 47, 62, 145, 230, 239, 322, 686
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	2 cut(s)	446, 459
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	125, 618
TaqI	TCGA	2 cut(s)	541, 562
TasI	AATT	5 cut(s)	56, 256, 391, 496, 537
TauI	GCSGC	2 cut(s)	49, 233
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	3 cut(s)	51, 549, 606
Tru9I	TTAA	3 cut(s)	51, 549, 606
TseI	GCWGC	2 cut(s)	332, 695
TspDTI	ATGAA	2 cut(s)	452, 489
TspGWI	ACGGA	2 cut(s)	122, 250
Tth111I	GACNNNGTC	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	236, 512
XapI	RAATTY	3 cut(s)	391, 496, 537
XspI	CTAG	2 cut(s)	446, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.