Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Forward (+)

45976666 .. 45981468

Gene Structure 4803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G562800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGAGCAGTAACAATGGAGGCGGAGGAGGAGGAGAAGATCAGCCGCCAACGGAAATCGCGGAGCTTAGCAAAACCCTAAAAGACGGAGAGAGAATTCTGGCGCCAACCCGACGACCCGATGGTACGCTTCGCAAACCCATCCGTATTCGGGCTGGGTATGTCCCCCAAGAGGAAGTCGCTATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGTCCTCTCAGACTGGACCTCCAGGTTTTGATGATACTTCAGTGGATACGACAAAACCCAAGACTAAGTCTGTAAAGAGGAATGAAAGAAAAAAGGAGAAGCGGATACAGGCTGCTCTTGAAAAGGAGAAAACCTCGGAAAGTGGGGAAACTAAGGAAGAGGAGGCATTTGTTGAAAATCTAGGCCATGTATCAGAATCTGTCAAGTCATTGACATCTCAGATGAACGAGTTTGGTGTTTCTTCTAGTCCTGCTTTAGTTACACCTCCCTCTGACTCAACAGAGGATTCGAATCCAGGGGGCCCAGTTCAAGATATTGATAAAAAAATTCGAGCTCTTAAAAAGAAGATTCGACTTGCCGAAGCTCAACAACAGAAAACTCATCAGCAAGATAATAAGTCAGAGCAGCTGGACAAGTTGACAAAACTGGAAGGTTGGCATAAGGAGCTAAAGCTTTTGGAGGATAAAAAGAAGGCTGAGTTGACTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

238

Amino Acids

26.11

Weight (kDa)

8.81

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	24, 47, 62, 322
AcsI	RAATTY	2 cut(s)	96, 546
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	151, 172
AgsI	TTSAA	3 cut(s)	341, 395, 530
AjnI	CCWGG	2 cut(s)	241, 514
AluBI	AGCT	6 cut(s)	67, 554, 584, 628, 667, 673
AluI	AGCT	6 cut(s)	67, 554, 584, 628, 667, 673
Alw21I	GWGCWC	1 cut(s)	556
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	403, 520
ApaI	GGGCCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	332, 625
ApoI	RAATTY	2 cut(s)	96, 546
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	236, 520, 521
AsuII	TTCGAA	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	524
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	2 cut(s)	524, 556
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	319, 637
BccI	CCATC	2 cut(s)	116, 149
BciT130I	CCWGG	2 cut(s)	243, 516
BciVI	GTATCC	2 cut(s)	259, 318
BfaI	CTAG	2 cut(s)	401, 465
BfoI	RGCGCY	1 cut(s)	107
BfuI	GTATCC	2 cut(s)	259, 318
BisI	GCNGC	3 cut(s)	47, 333, 626
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	3 cut(s)	48, 334, 627
Bme1390I	CCNGG	2 cut(s)	243, 516
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	236, 520, 521
BmiI	GGNNCC	3 cut(s)	105, 521, 522
BmrFI	CCNGG	2 cut(s)	243, 516
BmrI	ACTGGG	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	518
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 338, 370
BpmI	CTGGAG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	354, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 172
Bse1I	ACTGG	3 cut(s)	238, 524, 651
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	243, 516
BseDI	CCNNGG	2 cut(s)	354, 515
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	151, 172
BseMII	CTCAG	3 cut(s)	242, 452, 687
BseNI	ACTGG	3 cut(s)	238, 524, 651
BseRI	GAGGAG	4 cut(s)	42, 45, 48, 395
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	319, 637
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	405, 522
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	151, 172
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	405, 522
Bsp119I	TTCGAA	1 cut(s)	509
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	524, 556
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	68
BspACI	CCGC	4 cut(s)	24, 47, 62, 322
BspANI	GGCC	2 cut(s)	405, 522
BspCNI	CTCAG	3 cut(s)	241, 451, 688
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	105, 521, 522
BspT104I	TTCGAA	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	238, 524, 651
BssECI	CCNNGG	2 cut(s)	354, 515
BssMI	GATC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	243, 516
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	6 cut(s)	68, 228, 285, 372, 438, 696
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	664
BstNI	CCWGG	2 cut(s)	243, 516
BstSCI	CCNGG	2 cut(s)	241, 514
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	319, 637
BsuI	GTATCC	2 cut(s)	259, 318
BsuRI	GGCC	2 cut(s)	405, 522
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	236, 520, 521
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	6 cut(s)	68, 228, 285, 372, 438, 696
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	524, 556
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	241, 514
EcoT38I	GRGCYC	2 cut(s)	524, 556
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	1 cut(s)	410
FaiI	YATR	3 cut(s)	162, 408, 660
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	47, 333, 626
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	524, 556
Fsp4HI	GCNGC	3 cut(s)	47, 333, 626
FspBI	CTAG	2 cut(s)	401, 465
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	47, 333, 626
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	405, 522
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	639, 702
HindII	GTYRAC	2 cut(s)	639, 702
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	5 cut(s)	416, 494, 506, 511, 568
Hpy166II	GTNNAC	2 cut(s)	639, 702
Hpy188I	TCNGA	6 cut(s)	231, 358, 415, 441, 493, 622
Hpy188III	TCNNGA	3 cut(s)	338, 530, 711
Hpy8I	GTNNAC	2 cut(s)	639, 702
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	644, 685
HpyCH4V	TGCA	1 cut(s)	707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	664
HpyF3I	CTNAG	6 cut(s)	68, 228, 285, 372, 438, 696
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	64, 664
Lsp1109I	GCAGC	2 cut(s)	319, 637
MaeI	CTAG	2 cut(s)	401, 465
MaeIII	GTNAC	2 cut(s)	11, 478
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	50, 389, 453, 577
MhlI	GDGCHC	2 cut(s)	524, 556
MluCI	AATT	2 cut(s)	96, 546
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	243, 516
MvaI	CCWGG	2 cut(s)	243, 516
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	664
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	3 cut(s)	105, 521, 522
NspV	TTCGAA	1 cut(s)	509
PfeI	GAWTC	4 cut(s)	416, 506, 511, 568
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	48, 334, 627
PleI	GAGTC	1 cut(s)	488
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	241, 514
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	241, 514
PspN4I	GGNNCC	3 cut(s)	105, 521, 522
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	3 cut(s)	236, 520, 521
PstNI	CAGNNNCTG	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	47, 333, 626
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	3 cut(s)	236, 520, 521
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	243, 516
SduI	GDGCHC	2 cut(s)	524, 556
SfoI	GGCGCC	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	509
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	96, 546
SsiI	CCGC	4 cut(s)	24, 47, 62, 322
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	2 cut(s)	401, 465
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	2 cut(s)	241, 514
TaqI	TCGA	3 cut(s)	509, 550, 571
TasI	AATT	2 cut(s)	96, 546
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	4 cut(s)	416, 506, 511, 568
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	2 cut(s)	332, 625
TspDTI	ATGAA	2 cut(s)	318, 458
TspGWI	ACGGA	3 cut(s)	68, 102, 134
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	96, 546
XspI	CTAG	2 cut(s)	401, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.