Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Forward (+)

37063268 .. 37066579

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGAGCAGTAACAATGGAAGCGGAGGAGAAGGAGGAGATCCGCCGCTTAAGCAATTGGCGGAGCTTGGCAAAACCCTAAAAGAAGGGGAGAGGCTTCTGGGGCCAACCCGACGACCCGACGGTACGCTCCGTAAACCAATCCGCATTCGGGCTGGATATGTCCCCCAAGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGGGCTCAGCGGCTGGACCTCCGGGTTATGATGATACTTCCGTTGATACAACGAAACCCAAGACTAAGTCTGTAAAGAGGAACGAAAGAAAAAAAGAGAAGCGGATACAGCTGTTTCAGCGCTTACATCAGTGTTCAATTGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

123

Amino Acids

13.45

Weight (kDa)

9.76

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago-bind	PF09282	30 - 56	1.1e-12	Mago binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	24, 44, 47, 62, 145, 230, 322
AclWI	GGATC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	127
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	151, 172
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	357, 362
AluBI	AGCT	2 cut(s)	67, 331
AluI	AGCT	2 cut(s)	67, 331
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	104, 236
AsuC2I	CCSGG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	236
BaeI	ACNNNNGTAYC	4 cut(s)	246, 279, 317, 350
BanII	GRGCYC	1 cut(s)	227
BccI	CCATC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	343
BfrI	CTTAAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	47, 231
BlpI	GCTNAGC	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	48, 232
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	104, 236
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu1102I	GCTNAGC	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 172
BseLI	CCNNNNNNNGG	2 cut(s)	151, 172
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	42, 51
BshFI	GGCC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	151, 172
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	2 cut(s)	147, 368
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	226
BspACI	CCGC	7 cut(s)	24, 44, 47, 62, 145, 230, 322
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	50
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	226, 285
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 103, 328, 337
BstSCI	CCNGG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	104, 236
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	7 cut(s)	67, 97, 106, 155, 225, 233, 331
CviKI_1	RGCY	7 cut(s)	67, 97, 106, 155, 225, 233, 331
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	2 cut(s)	226, 285
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EciI	GGCGGA	2 cut(s)	33, 77
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	227
FaiI	YATR	2 cut(s)	162, 249
FaqI	GGGAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	47, 231
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	47, 231
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	2 cut(s)	47, 231
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	137
Hpy99I	CGWCG	2 cut(s)	117, 125
HpyAV	CCTTC	2 cut(s)	26, 80
HpyCH4III	ACNGT	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 103, 328, 337
HpyF3I	CTNAG	2 cut(s)	226, 285
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	64, 135
LpnPI	CCDG	4 cut(s)	86, 141, 219, 255
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MfeI	CAATTG	2 cut(s)	56, 357
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	56, 357
MnlI	CCTC	6 cut(s)	20, 29, 87, 166, 249, 291
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	230, 331
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	2 cut(s)	56, 357
Mva1269I	GAATGC	2 cut(s)	147, 368
MwoI	GCNNNNNNNGC	4 cut(s)	52, 103, 328, 337
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	105
PctI	GAATGC	2 cut(s)	147, 368
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	48, 232
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	104, 236
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	47, 231
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	104, 236
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	69, 202, 241, 333
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	56, 357
SsiI	CCGC	7 cut(s)	24, 44, 47, 62, 145, 230, 322
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	2 cut(s)	56, 357
TauI	GCSGC	2 cut(s)	49, 233
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	122, 250
TspRI	CASTG	1 cut(s)	356
Tth111I	GACNNNGTC	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.