Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Reverse (-)

48641910 .. 48646318

Gene Structure 4409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG385400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGAATCGCGGAGGCGGAGGAGATCAGGATCTGCAATTGACGGAGGAGCTTAGCAAAACCCTAAAACAAGGGGAGAGAATTCTGGCGCCAACCCGAAGACCCGACGGCACGCTCCGCAAACCCATCCGCATTCGCGCTGGTTATGTTCCCCAGGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGTCCTCACAGGCTGGTCCCCCAGGTTTTGATGATACTACTCCCGTCGCCGCCGCCGCCGATGCCAAACCCAAGACCAAGTCTGTAAAGCGGAATGAAAGAAAGAAGGAGAAGCGGCTGCAGGCTGCTCTTGAAAAGGAGAAAACCTCAGAAGAAGCGGAAACTGGGGATACTAAGGAGGAAGAGCTACCTGCTCAAGATGTAGGTCATGCACCAGCATCAGTCCAGTCATTGACATCTCAGATGAACGAGCTTGGTGTTTCTTCTAATTCTGCTCTAGTTACCCCTTCCTCTGACTCAACAGAGGATTCAAATCCAGGAGCTCCAGTTCAAGATATTGATAAAAAAATCCGAGCTCTCAAAAAAAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

8.67

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago-bind	PF09282	25 - 51	4.5e-13	Mago binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	2 cut(s)	12, 138
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	338, 516, 536
AjnI	CCWGG	3 cut(s)	153, 226, 520
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	5 cut(s)	52, 391, 457, 527, 560
AluI	AGCT	5 cut(s)	52, 391, 457, 527, 560
Alw21I	GWGCWC	2 cut(s)	529, 562
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	322, 329
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	91, 140
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	529, 562
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	529, 562
BbvI	GCAGC	2 cut(s)	309, 316
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	3 cut(s)	155, 228, 522
BciVI	GTATCC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	6 cut(s)	255, 258, 261, 320, 323, 330
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	6 cut(s)	256, 259, 262, 321, 324, 331
Bme1390I	CCNGG	3 cut(s)	155, 228, 522
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	90, 223
BmrFI	CCNGG	3 cut(s)	155, 228, 522
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	256, 431
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 335, 367
BpmI	CTGGAG	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	384
BsaBI	GATNNNNATC	2 cut(s)	30, 516
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	153, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bse1I	ACTGG	3 cut(s)	373, 430, 530
Bse8I	GATNNNNATC	2 cut(s)	30, 516
BseBI	CCWGG	3 cut(s)	155, 228, 522
BseDI	CCNNGG	2 cut(s)	153, 226
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	2 cut(s)	30, 516
BseMII	CTCAG	2 cut(s)	366, 458
BseNI	ACTGG	3 cut(s)	373, 430, 530
BseRI	GAGGAG	2 cut(s)	36, 62
BseXI	GCAGC	2 cut(s)	309, 316
Bsh1236I	CGCG	2 cut(s)	12, 138
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	529, 562
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	529, 562
Bsp143I	GATC	2 cut(s)	25, 31
Bsp1720I	GCTNAGC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	365, 457
BspFNI	CGCG	2 cut(s)	12, 138
BspLI	GGNNCC	2 cut(s)	90, 223
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	373, 430, 530
BssECI	CCNNGG	2 cut(s)	153, 226
BssMI	GATC	2 cut(s)	25, 31
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	155, 228, 522
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	113, 327
BstDEI	CTNAG	4 cut(s)	53, 352, 378, 444
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	2 cut(s)	12, 138
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 140
BstKTI	GATC	2 cut(s)	28, 34
BstMBI	GATC	2 cut(s)	25, 31
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 260, 266
BstNI	CCWGG	3 cut(s)	155, 228, 522
BstSCI	CCNGG	3 cut(s)	153, 226, 520
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	2 cut(s)	12, 138
BstV1I	GCAGC	2 cut(s)	309, 316
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	113, 327
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	2 cut(s)	91, 140
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	8 cut(s)	52, 218, 322, 329, 391, 457, 527, 560
CviKI_1	RGCY	8 cut(s)	52, 218, 322, 329, 391, 457, 527, 560
DdeI	CTNAG	4 cut(s)	53, 352, 378, 444
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	2 cut(s)	27, 33
DpnII	GATC	2 cut(s)	25, 31
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	2 cut(s)	527, 560
Eco24I	GRGCYC	2 cut(s)	529, 562
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	2 cut(s)	527, 560
EcoICRI	GAGCTC	2 cut(s)	527, 560
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	153, 226, 520
EcoT38I	GRGCYC	2 cut(s)	529, 562
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	416
FaiI	YATR	3 cut(s)	147, 414, 577
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	255, 258, 261, 320, 323, 330
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	529, 562
Fsp4HI	GCNGC	6 cut(s)	255, 258, 261, 320, 323, 330
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	2 cut(s)	90, 139
GluI	GCNGC	6 cut(s)	255, 258, 261, 320, 323, 330
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	2 cut(s)	91, 140
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	2 cut(s)	89, 138
HinP1I	GCGC	2 cut(s)	89, 138
HinfI	GANTC	3 cut(s)	7, 500, 512
Hpy188I	TCNGA	4 cut(s)	355, 447, 499, 557
Hpy188III	TCNNGA	4 cut(s)	29, 335, 401, 536
Hpy99I	CGWCG	2 cut(s)	110, 254
HpyAV	CCTTC	2 cut(s)	304, 501
HpyCH4V	TGCA	3 cut(s)	37, 325, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 260, 266
HpyF3I	CTNAG	4 cut(s)	53, 352, 378, 444
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	2 cut(s)	89, 138
KasI	GGCGCC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	25, 31
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	4 cut(s)	49, 120, 524, 532
Lsp1109I	GCAGC	2 cut(s)	309, 316
LweI	GCATC	2 cut(s)	256, 431
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	27, 33
MboI	GATC	2 cut(s)	25, 31
MboII	GAAGA	4 cut(s)	111, 368, 398, 459
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	529, 562
MluCI	AATT	3 cut(s)	38, 81, 472
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	9 cut(s)	8, 14, 40, 151, 220, 361, 376, 502, 505
MspR9I	CCNGG	3 cut(s)	155, 228, 522
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	3 cut(s)	155, 228, 522
MvnI	CGCG	2 cut(s)	12, 138
MwoI	GCNNNNNNNGC	3 cut(s)	117, 260, 266
NarI	GGCGCC	1 cut(s)	89
NdeII	GATC	2 cut(s)	25, 31
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	90, 223
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	7, 512
PflFI	GACNNNGTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	6 cut(s)	256, 259, 262, 321, 324, 331
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	494
Psp124BI	GAGCTC	2 cut(s)	529, 562
Psp6I	CCWGG	3 cut(s)	153, 226, 520
PspGI	CCWGG	3 cut(s)	153, 226, 520
PspN4I	GGNNCC	2 cut(s)	90, 223
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	283
SacI	GAGCTC	2 cut(s)	529, 562
SapI	GCTCTTC	1 cut(s)	381
SatI	GCNGC	6 cut(s)	255, 258, 261, 320, 323, 330
Sau3AI	GATC	2 cut(s)	25, 31
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	155, 228, 522
SduI	GDGCHC	2 cut(s)	529, 562
SfaNI	GCATC	2 cut(s)	256, 431
SfcI	CTRYAG	1 cut(s)	323
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	3 cut(s)	38, 81, 472
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	2 cut(s)	529, 562
StyD4I	CCNGG	3 cut(s)	153, 226, 520
TasI	AATT	3 cut(s)	38, 81, 472
TauI	GCSGC	4 cut(s)	257, 260, 263, 322
TfiI	GAWTC	2 cut(s)	7, 512
TseI	GCWGC	2 cut(s)	322, 329
TspDTI	ATGAA	2 cut(s)	315, 464
TspGWI	ACGGA	1 cut(s)	59
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.