Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Forward (+)

19960756 .. 19964121

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGTGCTTCTTTCCCTTCAAATCCAAGAACAAACAAAAGGAGTCAAAGTCAGCTCCGGATTTGAGAAACAAAAGCGACTCCTTAACTCCGGTATTAGACCGTGCCTCGAAATCTTTACCTTCACCAAGAAGCATACCAGAATTGTACAAAGAGAAGGAGCAGAATTTGAAGGTTTTCTCACTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGGGAAGGGGGATTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGTAGTCCAATCTTGGTTGCCATAAAAAAGTTGAATCCACATAGCTTACAGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAATCACCCAAATCTGGTAAAGCTTCTAGGATATTGCTCTGTAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATATGAATATATGCCTAATAGGAGCTTAGAGGATCATCTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGAGGACTTTAAGCCGAAGCTCTCAGACTTCGGGCTTGCTAGAGAAGGGCCAAAGGGTGACCGTACTCATGTATCGACAGCAGTGGTAGGGACTTATGGATATGCTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGACTTATGGAGTTTTGGTGTGGTGCTGTATGAGATCCTCACTGGGAGGCGTGTCTTAGAAAGACACCGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTGGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAGAACCCCAAGTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

386

Amino Acids

43.49

Weight (kDa)

9.68

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 351	1.1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 353	4.5e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
Acc65I	GGTACC	1 cut(s)	1088
AccB1I	GGYRCC	1 cut(s)	1088
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	1 cut(s)	869
AclWI	GGATC	6 cut(s)	439, 452, 501, 539, 820, 932
AcoI	YGGCCR	2 cut(s)	860, 1028
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	4 cut(s)	149, 709, 902, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	284, 400, 1155
AgsI	TTSAA	9 cut(s)	22, 172, 204, 325, 371, 505, 517, 622, 1060
AhdI	GACNNNNNGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	600
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
Alw21I	GWGCWC	2 cut(s)	195, 639
Alw26I	GTCTC	1 cut(s)	945
AlwI	GGATC	6 cut(s)	439, 452, 501, 539, 820, 932
Aor13HI	TCCGGA	1 cut(s)	58
AoxI	GGCC	4 cut(s)	692, 772, 860, 1028
ApeKI	GCWGC	4 cut(s)	560, 749, 971, 1002
ApoI	RAATTY	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	966
Asp700I	GAANNNNTTC	2 cut(s)	8, 176
Asp718I	GGTACC	1 cut(s)	1088
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	4 cut(s)	117, 383, 616, 713
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BamHI	GGATCC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	1088
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	2 cut(s)	535, 584
Bbv12I	GWGCWC	2 cut(s)	195, 639
BbvI	GCAGC	4 cut(s)	547, 736, 983, 989
BccI	CCATC	3 cut(s)	425, 783, 791
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	945
BfaI	CTAG	2 cut(s)	413, 684
BfmI	CTRYAG	2 cut(s)	426, 906
BfuAI	ACCTGC	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	992
BglII	AGATCT	1 cut(s)	1053
BisI	GCNGC	4 cut(s)	561, 750, 972, 1003
BlsI	GCNGC	4 cut(s)	562, 751, 973, 1004
Bme1390I	CCNGG	1 cut(s)	602
BmeRI	GACNNNNNGTC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	446, 1090
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	1127
BmuI	ACTGGG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	945
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	2 cut(s)	58, 91
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 793, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 400, 1155
Bse118I	RCCGGY	2 cut(s)	858, 1026
Bse1I	ACTGG	3 cut(s)	597, 838, 955
BseAI	TCCGGA	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	2 cut(s)	649, 783
BseLI	CCNNNNNNNGG	3 cut(s)	284, 400, 1155
BseMII	CTCAG	2 cut(s)	208, 681
BseNI	ACTGG	3 cut(s)	597, 838, 955
BseXI	GCAGC	4 cut(s)	547, 736, 983, 989
BshFI	GGCC	4 cut(s)	694, 774, 862, 1030
BshNI	GGYRCC	1 cut(s)	1088
BsiHKAI	GWGCWC	2 cut(s)	195, 639
BsiSI	CCGG	4 cut(s)	59, 92, 859, 1027
BslFI	GGGAC	2 cut(s)	603, 748
BslI	CCNNNNNNNGG	3 cut(s)	284, 400, 1155
BsmAI	GTCTC	1 cut(s)	945
BsmFI	GGGAC	2 cut(s)	603, 748
BsmI	GAATGC	1 cut(s)	1021
BsnI	GGCC	4 cut(s)	694, 774, 862, 1030
Bso31I	GGTCTC	1 cut(s)	945
Bsp1286I	GDGCHC	2 cut(s)	195, 639
Bsp13I	TCCGGA	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	4 cut(s)	694, 774, 862, 1030
BspCNI	CTCAG	2 cut(s)	207, 680
BspEI	TCCGGA	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	446, 1090
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	6 cut(s)	439, 452, 501, 539, 820, 932
BspT107I	GGYRCC	1 cut(s)	1088
BspTNI	GGTCTC	1 cut(s)	945
BsrFI	RCCGGY	2 cut(s)	858, 1026
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	3 cut(s)	597, 838, 955
BssAI	RCCGGY	2 cut(s)	858, 1026
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
BssSI	CACGAG	2 cut(s)	535, 584
BssT1I	CCWWGG	1 cut(s)	527
Bst2BI	CACGAG	2 cut(s)	535, 584
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	4 cut(s)	104, 707, 900, 914
Bst6I	CTCTTC	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	360, 681, 1065
BstDEI	CTNAG	5 cut(s)	194, 487, 667, 847, 947
BstEII	GGTNACC	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	649, 783
BstKTI	GATC	6 cut(s)	447, 496, 534, 828, 940, 1056
BstMAI	GTCTC	1 cut(s)	945
BstMBI	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
BstMWI	GCNNNNNNNGC	1 cut(s)	992
BstNI	CCWGG	1 cut(s)	602
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	2 cut(s)	426, 906
BstV1I	GCAGC	4 cut(s)	547, 736, 983, 989
BstX2I	RGATCY	4 cut(s)	444, 825, 937, 1053
BstYI	RGATCY	4 cut(s)	444, 825, 937, 1053
BsuRI	GGCC	4 cut(s)	694, 774, 862, 1030
BtsCI	GGATG	2 cut(s)	649, 783
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	732, 831
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	360, 681, 1065
Cfr10I	RCCGGY	2 cut(s)	858, 1026
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	4 cut(s)	148, 708, 901, 1089
CviAII	CATG	2 cut(s)	713, 928
CviQI	GTAC	4 cut(s)	148, 708, 901, 1089
DdeI	CTNAG	5 cut(s)	194, 487, 667, 847, 947
DpnI	GATC	6 cut(s)	446, 495, 533, 827, 939, 1055
DpnII	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
DriI	GACNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	2 cut(s)	860, 1028
Eam1104I	CTCTTC	1 cut(s)	528
Eam1105I	GACNNNNNGTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	945
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	527
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	2 cut(s)	716, 931
FalI	AAGNNNNNCTT	3 cut(s)	28, 342, 374
FaqI	GGGAC	2 cut(s)	603, 748
FatI	CATG	2 cut(s)	712, 927
Fnu4HI	GCNGC	4 cut(s)	561, 750, 972, 1003
FokI	GGATG	2 cut(s)	656, 770
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	561, 750, 972, 1003
FspBI	CTAG	2 cut(s)	413, 684
GluI	GCNGC	4 cut(s)	561, 750, 972, 1003
HaeIII	GGCC	4 cut(s)	694, 774, 862, 1030
HapII	CCGG	4 cut(s)	59, 92, 859, 1027
Hin1II	CATG	2 cut(s)	716, 931
HindIII	AAGCTT	3 cut(s)	230, 407, 878
HinfI	GANTC	6 cut(s)	44, 80, 200, 325, 1039, 1076
HpaII	CCGG	4 cut(s)	59, 92, 859, 1027
HphI	GGTGA	4 cut(s)	117, 383, 616, 713
Hpy188I	TCNGA	2 cut(s)	670, 978
Hpy188III	TCNNGA	4 cut(s)	59, 535, 614, 1057
HpyAV	CCTTC	6 cut(s)	28, 132, 151, 166, 233, 683
HpyCH4III	ACNGT	4 cut(s)	104, 707, 900, 914
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	5 cut(s)	226, 362, 908, 971, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	992
HpyF3I	CTNAG	5 cut(s)	194, 487, 667, 847, 947
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	2 cut(s)	716, 931
Kpn2I	TCCGGA	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	1092
Kzo9I	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
LmnI	GCTCC	4 cut(s)	61, 160, 483, 871
Lsp1109I	GCAGC	4 cut(s)	547, 736, 983, 989
LweI	GCATC	1 cut(s)	1127
MaeI	CTAG	2 cut(s)	413, 684
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	3 cut(s)	540, 701, 791
MalI	GATC	6 cut(s)	446, 495, 533, 827, 939, 1055
MboI	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
MboII	GAAGA	1 cut(s)	515
MflI	RGATCY	4 cut(s)	444, 825, 937, 1053
MhlI	GDGCHC	2 cut(s)	195, 639
MluCI	AATT	6 cut(s)	143, 166, 371, 981, 1108, 1130
MlyI	GAGTC	2 cut(s)	53, 74
MmeI	TCCRAC	2 cut(s)	472, 654
MroI	TCCGGA	1 cut(s)	58
MroXI	GAANNNNTTC	2 cut(s)	8, 176
MseI	TTAA	3 cut(s)	86, 654, 966
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	4 cut(s)	59, 92, 859, 1027
MspR9I	CCNGG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	1021
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	992
NdeII	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
NlaIII	CATG	2 cut(s)	716, 931
NlaIV	GGNNCC	2 cut(s)	446, 1090
NmuCI	GTSAC	2 cut(s)	701, 791
PctI	GAATGC	1 cut(s)	1021
PdmI	GAANNNNTTC	2 cut(s)	8, 176
PfeI	GAWTC	4 cut(s)	200, 325, 1039, 1076
PkrI	GCNGC	4 cut(s)	562, 751, 973, 1004
PleI	GAGTC	2 cut(s)	52, 74
PpsI	GAGTC	2 cut(s)	52, 74
PshBI	ATTAAT	1 cut(s)	966
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	446, 1090
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	4 cut(s)	444, 825, 937, 1053
RsaI	GTAC	4 cut(s)	149, 709, 902, 1090
RsaNI	GTAC	4 cut(s)	148, 708, 901, 1089
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	86, 654, 966
SatI	GCNGC	4 cut(s)	561, 750, 972, 1003
Sau3AI	GATC	6 cut(s)	444, 493, 531, 825, 937, 1053
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	2 cut(s)	53, 74
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	195, 639
SfaNI	GCATC	1 cut(s)	1127
SfcI	CTRYAG	2 cut(s)	426, 906
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	6 cut(s)	143, 166, 371, 981, 1108, 1130
SsiI	CCGC	1 cut(s)	869
SspMI	CTAG	2 cut(s)	413, 684
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	4 cut(s)	104, 707, 900, 914
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	4 cut(s)	110, 613, 719, 765
TasI	AATT	6 cut(s)	143, 166, 371, 981, 1108, 1130
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	4 cut(s)	200, 325, 1039, 1076
Tru1I	TTAA	3 cut(s)	86, 654, 966
Tru9I	TTAA	3 cut(s)	86, 654, 966
TscAI	CASTG	2 cut(s)	732, 838
TseFI	GTSAC	2 cut(s)	701, 791
TseI	GCWGC	4 cut(s)	560, 749, 971, 1002
Tsp45I	GTSAC	2 cut(s)	701, 791
TspDTI	ATGAA	3 cut(s)	17, 480, 1052
TspRI	CASTG	2 cut(s)	732, 838
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmnI	GAANNNNTTC	2 cut(s)	8, 176
XspI	CTAG	2 cut(s)	413, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.