Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Forward (+)

19642868 .. 19646656

Gene Structure 3789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAAGCAGCAACAATGGAAGCGGAGGAGAAGAAGATCAGCCGCTGGAGAAATTGGCGGAGCTTAGCAAAACCCTAAAAGAAGGGGAGAGGCTTCTGGCGCCAACCCGACGACCCGACGGTACGCTCCGTAAACCCATCCGCATTCGGGCTGGATATTTTCCCCAAGACGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGGCCTCAGCGGCTGGACCTCCGGGTTATGATGTTGCTTCCGTTGATACAGCGAAACCCAAGACTAAGTCTGTAAAGAGGAACGAAAGAAAAAAGGAGAAGCGGATACAGGCTGCTCTTGAAAAGGAGAAAACCTCGGAAAGTGGGGAAACTAAGGAAGAAGTTGAAAATTTAGGTCATGTATCAGAATATGTTGAGTCATTGGCATCTCAGATGAACGAGCTAGGTGTTTCTTCTAGTCCTTTAGTTACCCCTCCCTCTGATTCAACAGAGGATTCGAATCCAGCGGGTCCAGCTCAAGACATAGATAAAAGAATTCGAGCTCTTAAAAAGAAGATTCGACTTTCAGAAGCTCAACAGCAGAAAACTAATCAGCAAGATATCAAGTCAGAACAGTTGGAGAAGTTGACGAAACTGGAAGGTTGGCGTAAGGAGCTAAAGCTTTTGGAGGATAAAAAGAAGGCTGAGCCGGCCGCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

233

Amino Acids

25.69

Weight (kDa)

8.99

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	8 cut(s)	24, 44, 59, 142, 227, 319, 503, 690
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	385, 531
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	338, 383, 483
AluBI	AGCT	7 cut(s)	64, 439, 512, 539, 569, 652, 658
AluI	AGCT	7 cut(s)	64, 439, 512, 539, 569, 652, 658
Alw21I	GWGCWC	1 cut(s)	541
AlwNI	CAGNNNCTG	2 cut(s)	46, 230
AoxI	GGCC	2 cut(s)	219, 687
ApeKI	GCWGC	2 cut(s)	9, 329
ApoI	RAATTY	2 cut(s)	385, 531
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	233, 506
AsuC2I	CCSGG	1 cut(s)	240
AsuII	TTCGAA	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	233, 506
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	541
BbvCI	CCTCAGC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	21, 316
BccI	CCATC	2 cut(s)	146, 211
BciVI	GTATCC	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	2 cut(s)	440, 453
BfoI	RGCGCY	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	10, 44, 228, 330, 690
BlpI	GCTNAGC	2 cut(s)	65, 681
BlsI	GCNGC	5 cut(s)	11, 45, 229, 331, 691
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	233, 506
BmgT120I	GGNCC	2 cut(s)	233, 506
BmiI	GGNNCC	2 cut(s)	102, 507
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	431
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 335, 367
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	223
Bpu1102I	GCTNAGC	2 cut(s)	65, 681
Bpu14I	TTCGAA	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	237, 440, 672
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	687
BseXI	GCAGC	2 cut(s)	21, 316
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	221, 689
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	239, 686
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	221, 689
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	37
Bsp1720I	GCTNAGC	2 cut(s)	65, 681
BspACI	CCGC	8 cut(s)	24, 44, 59, 142, 227, 319, 503, 690
BspANI	GGCC	2 cut(s)	221, 689
BspCNI	CTCAG	3 cut(s)	236, 439, 673
BspLI	GGNNCC	2 cut(s)	102, 507
BspT104I	TTCGAA	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	122, 612, 696
BstACI	GRCGYC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	7, 687
BstDEI	CTNAG	6 cut(s)	65, 223, 282, 369, 426, 681
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 227, 509, 649, 686
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	21, 316
BstZI	CGGCCG	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	221, 689
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	2 cut(s)	7, 687
CaiI	CAGNNNCTG	2 cut(s)	46, 230
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	233, 506
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	6 cut(s)	65, 223, 282, 369, 426, 681
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	687
EagI	CGGCCG	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	539
EclXI	CGGCCG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	233, 506
Eco52I	CGGCCG	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	531
EcoRV	GATATC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	541
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaeI	CATG	1 cut(s)	398
FaiI	YATR	4 cut(s)	246, 396, 408, 521
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	5 cut(s)	10, 44, 228, 330, 690
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	5 cut(s)	10, 44, 228, 330, 690
FspBI	CTAG	2 cut(s)	440, 453
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	5 cut(s)	10, 44, 228, 330, 690
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	221, 689
HapII	CCGG	2 cut(s)	239, 686
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	5 cut(s)	413, 479, 491, 496, 553
HpaII	CCGG	2 cut(s)	239, 686
Hpy166II	GTNNAC	2 cut(s)	134, 624
Hpy188I	TCNGA	6 cut(s)	355, 403, 429, 478, 565, 607
Hpy188III	TCNNGA	2 cut(s)	335, 515
Hpy8I	GTNNAC	2 cut(s)	134, 624
Hpy99I	CGWCG	2 cut(s)	114, 122
HpyAV	CCTTC	3 cut(s)	77, 629, 670
HpyCH4III	ACNGT	3 cut(s)	122, 612, 696
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 227, 509, 649, 686
HpyF3I	CTNAG	6 cut(s)	65, 223, 282, 369, 426, 681
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	61, 132, 649
LpnPI	CCDG	9 cut(s)	32, 83, 138, 216, 252, 311, 513, 522, 617
Lsp1109I	GCAGC	2 cut(s)	21, 316
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	440, 453
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	5 cut(s)	44, 47, 386, 441, 562
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	3 cut(s)	53, 385, 531
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	594
MroNI	GCCGGC	1 cut(s)	685
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	3 cut(s)	46, 227, 503
MspI	CCGG	2 cut(s)	239, 686
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	100, 227, 509, 649, 686
NaeI	GCCGGC	1 cut(s)	687
NarI	GGCGCC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	685
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	102, 507
NspV	TTCGAA	1 cut(s)	494
PctI	GAATGC	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	687
PfeI	GAWTC	4 cut(s)	479, 491, 496, 553
PflFI	GACNNNGTC	2 cut(s)	173, 283
PkrI	GCNGC	5 cut(s)	11, 45, 229, 331, 691
PleI	GAGTC	1 cut(s)	421
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	102, 507
PspPI	GGNCC	2 cut(s)	233, 506
PstNI	CAGNNNCTG	2 cut(s)	46, 230
PsyI	GACNNNGTC	2 cut(s)	173, 283
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	5 cut(s)	10, 44, 228, 330, 690
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	233, 506
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	1 cut(s)	431
SfoI	GGCGCC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	494
SinI	GGWCC	2 cut(s)	233, 506
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	53, 385, 531
SsiI	CCGC	8 cut(s)	24, 44, 59, 142, 227, 319, 503, 690
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	440, 453
SstI	GAGCTC	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	122, 612, 696
TaqI	TCGA	3 cut(s)	494, 535, 556
TasI	AATT	3 cut(s)	53, 385, 531
TauI	GCSGC	3 cut(s)	46, 230, 692
TfiI	GAWTC	4 cut(s)	479, 491, 496, 553
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	699
TseI	GCWGC	2 cut(s)	9, 329
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	2 cut(s)	119, 247
TspRI	CASTG	1 cut(s)	699
Tth111I	GACNNNGTC	2 cut(s)	173, 283
VpaK11BI	GGWCC	2 cut(s)	233, 506
XapI	RAATTY	2 cut(s)	385, 531
XspI	CTAG	2 cut(s)	440, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.