RchiOBHm_Chr7g0224271

Partner of Y14 and

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008395
Physical Location & Seq
Reverse (-)
46247856 .. 46251782
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20081

Sequence Viewer

Length: 693 bp
ATGGCGAATCGCGGAGGCGGAGGAGATCAGGATCTGCAATTGACGGAGGAGCTTAGCAAAACCCTAAAACAAGGGGAGAGAATTCTGGCGCCAACCCGAAGACCCGACGGCACGCTCCGCAAACCCATCCGCATTCGCGCTGGTTATGTTCCCCAGGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGTCCTCACAGGCTGGTCCCCCAGGTTTTGATGATACTACTCCCGTCGCCGCCGATGCCAAACCCAAGACCAAGTCTGTAAAGAGGAATGAAAGAAAGAAAGAGAAGCGGCTGCAGGCTGCTCTTGAAAAGGAGAAAACCTCAGAAGAAGCGGAAACTGGGGATACTAAGGAGGAAGAGCTACCTGCTCAAGATGTAGGTCATGCACCAGCATCAGTCCAGTCATTGACATCTCAGATGAACGAGCTTGGTGTTTCTTCTAATTCTGCTCTAGTTACCCCTTCCTCTGACTCAACAGAGGATTCAAATCCAGGAGCTCCAGTTCAAGATATTGATAAAAAAATCCGAGCTCTCAAAAAAAAGATTCGACTTGCAGAAGCTCAACAGCAGAAAACTCATCAGCCAGAGCAGTTGGAAAAGTTAACGAAACTTGAAGGATGGCGTCAGGAGCTAAAGCTTTTGGAGGATAAAAAGAAAGCTGAATCATGA

Protein Analysis

230

Amino Acids

25.39

Weight (kDa)

8.86

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mago-bind PF09282 25 - 51 5.9e-13 Mago binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 88
AccII CGCG 2 cut(s) 12, 138
AciI CCGC 7 cut(s) 12, 18, 118, 130, 255, 313, 356
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 81
AcyI GRCGYC 2 cut(s) 89, 646
AgsI TTSAA 4 cut(s) 332, 510, 530, 638
AjnI CCWGG 3 cut(s) 153, 226, 514
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 9 cut(s) 52, 385, 451, 521, 554, 584, 655, 661, 683
AluI AGCT 9 cut(s) 52, 385, 451, 521, 554, 584, 655, 661, 683
Alw21I GWGCWC 2 cut(s) 523, 556
AlwI GGATC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 316, 323
ApoI RAATTY 1 cut(s) 81
AspLEI GCGC 2 cut(s) 91, 140
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 523, 556
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 523, 556
BbvI GCAGC 2 cut(s) 303, 310
BccI CCATC 2 cut(s) 134, 636
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 3 cut(s) 155, 228, 516
BciVI GTATCC 1 cut(s) 361
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 4 cut(s) 255, 314, 317, 324
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 4 cut(s) 256, 315, 318, 325
Bme1390I CCNGG 3 cut(s) 155, 228, 516
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 90, 223
BmrFI CCNGG 3 cut(s) 155, 228, 516
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 250, 425
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 106
BplI GAGNNNNNCTC 4 cut(s) 194, 226, 329, 361
BpmI CTGGAG 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 378
BsaBI GATNNNNATC 2 cut(s) 30, 510
BsaHI GRCGYC 2 cut(s) 89, 646
BsaJI CCNNGG 2 cut(s) 153, 226
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bse1I ACTGG 3 cut(s) 367, 424, 524
Bse8I GATNNNNATC 2 cut(s) 30, 510
BseBI CCWGG 3 cut(s) 155, 228, 516
BseDI CCNNGG 2 cut(s) 153, 226
BseGI GGATG 2 cut(s) 126, 647
BseJI GATNNNNATC 2 cut(s) 30, 510
BseMII CTCAG 2 cut(s) 360, 452
BseNI ACTGG 3 cut(s) 367, 424, 524
BseRI GAGGAG 2 cut(s) 36, 62
BseXI GCAGC 2 cut(s) 303, 310
Bsh1236I CGCG 2 cut(s) 12, 138
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 523, 556
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 523, 556
Bsp143I GATC 2 cut(s) 25, 31
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 7 cut(s) 12, 18, 118, 130, 255, 313, 356
BspCNI CTCAG 2 cut(s) 359, 451
BspFNI CGCG 2 cut(s) 12, 138
BspHI TCATGA 1 cut(s) 689
BspLI GGNNCC 2 cut(s) 90, 223
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 88
BsrI ACTGG 3 cut(s) 367, 424, 524
BssECI CCNNGG 2 cut(s) 153, 226
BssMI GATC 2 cut(s) 25, 31
BssNI GRCGYC 2 cut(s) 89, 646
Bst2UI CCWGG 3 cut(s) 155, 228, 516
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 2 cut(s) 89, 646
BstC8I GCNNGC 2 cut(s) 113, 321
BstDEI CTNAG 4 cut(s) 53, 346, 372, 438
BstF5I GGATG 2 cut(s) 126, 647
BstFNI CGCG 2 cut(s) 12, 138
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 91, 140
BstKTI GATC 2 cut(s) 28, 34
BstMBI GATC 2 cut(s) 25, 31
BstMWI GCNNNNNNNGC 3 cut(s) 117, 260, 652
BstNI CCWGG 3 cut(s) 155, 228, 516
BstSCI CCNGG 3 cut(s) 153, 226, 514
BstSFI CTRYAG 1 cut(s) 317
BstUI CGCG 2 cut(s) 12, 138
BstV1I GCAGC 2 cut(s) 303, 310
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 126, 647
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 2 cut(s) 113, 321
CaiI CAGNNNCTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 689
CfoI GCGC 2 cut(s) 91, 140
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 635
CviAII CATG 2 cut(s) 407, 690
DdeI CTNAG 4 cut(s) 53, 346, 372, 438
DinI GGCGCC 1 cut(s) 90
DpnI GATC 2 cut(s) 27, 33
DpnII GATC 2 cut(s) 25, 31
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 2 cut(s) 521, 554
Eco24I GRGCYC 2 cut(s) 523, 556
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 2 cut(s) 521, 554
EcoICRI GAGCTC 2 cut(s) 521, 554
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 153, 226, 514
EcoT38I GRGCYC 2 cut(s) 523, 556
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
FaeI CATG 2 cut(s) 410, 693
FaiI YATR 3 cut(s) 147, 408, 691
FaqI GGGAC 1 cut(s) 207
FatI CATG 2 cut(s) 406, 689
Fnu4HI GCNGC 4 cut(s) 255, 314, 317, 324
FokI GGATG 2 cut(s) 113, 654
FriOI GRGCYC 2 cut(s) 523, 556
Fsp4HI GCNGC 4 cut(s) 255, 314, 317, 324
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 90, 139
GluI GCNGC 4 cut(s) 255, 314, 317, 324
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 92
HgaI GACGC 1 cut(s) 635
HhaI GCGC 2 cut(s) 91, 140
Hin1I GRCGYC 2 cut(s) 89, 646
Hin1II CATG 2 cut(s) 410, 693
Hin6I GCGC 2 cut(s) 89, 138
HinP1I GCGC 2 cut(s) 89, 138
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 5 cut(s) 7, 494, 506, 568, 686
HpaI GTTAAC 1 cut(s) 627
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 4 cut(s) 349, 441, 493, 551
Hpy188III TCNNGA 6 cut(s) 29, 329, 395, 530, 650, 690
Hpy8I GTNNAC 1 cut(s) 627
Hpy99I CGWCG 2 cut(s) 110, 254
HpyAV CCTTC 2 cut(s) 495, 632
HpyCH4V TGCA 4 cut(s) 37, 319, 410, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 260, 652
HpyF3I CTNAG 4 cut(s) 53, 346, 372, 438
Hsp92I GRCGYC 2 cut(s) 89, 646
Hsp92II CATG 2 cut(s) 410, 693
HspAI GCGC 2 cut(s) 89, 138
KasI GGCGCC 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 627
Kzo9I GATC 2 cut(s) 25, 31
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 5 cut(s) 49, 120, 518, 526, 652
Lsp1109I GCAGC 2 cut(s) 303, 310
LweI GCATC 2 cut(s) 250, 425
MaeI CTAG 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 27, 33
MboI GATC 2 cut(s) 25, 31
MboII GAAGA 4 cut(s) 111, 362, 392, 453
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 523, 556
MluCI AATT 3 cut(s) 38, 81, 466
Mly113I GGCGCC 1 cut(s) 89
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 597
MseI TTAA 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 155, 228, 516
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 3 cut(s) 155, 228, 516
MvnI CGCG 2 cut(s) 12, 138
MwoI GCNNNNNNNGC 3 cut(s) 117, 260, 652
NarI GGCGCC 1 cut(s) 89
NdeII GATC 2 cut(s) 25, 31
NlaIII CATG 2 cut(s) 410, 693
NlaIV GGNNCC 2 cut(s) 90, 223
PagI TCATGA 1 cut(s) 689
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 4 cut(s) 7, 506, 568, 686
PflFI GACNNNGTC 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 4 cut(s) 256, 315, 318, 325
PleI GAGTC 1 cut(s) 488
PluTI GGCGCC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 488
Psp124BI GAGCTC 2 cut(s) 523, 556
Psp6I CCWGG 3 cut(s) 153, 226, 514
PspGI CCWGG 3 cut(s) 153, 226, 514
PspN4I GGNNCC 2 cut(s) 90, 223
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 277
SacI GAGCTC 2 cut(s) 523, 556
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 4 cut(s) 255, 314, 317, 324
Sau3AI GATC 2 cut(s) 25, 31
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 3 cut(s) 155, 228, 516
SduI GDGCHC 2 cut(s) 523, 556
SfaNI GCATC 2 cut(s) 250, 425
SfcI CTRYAG 1 cut(s) 317
SfoI GGCGCC 1 cut(s) 90
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 3 cut(s) 38, 81, 466
SsiI CCGC 7 cut(s) 12, 18, 118, 130, 255, 313, 356
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 2 cut(s) 523, 556
StyD4I CCNGG 3 cut(s) 153, 226, 514
TaqI TCGA 1 cut(s) 571
TasI AATT 3 cut(s) 38, 81, 466
TauI GCSGC 2 cut(s) 257, 316
TfiI GAWTC 4 cut(s) 7, 506, 568, 686
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TseI GCWGC 2 cut(s) 316, 323
TspDTI ATGAA 2 cut(s) 309, 458
TspGWI ACGGA 1 cut(s) 59
Tth111I GACNNNGTC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 81
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.