Rh7BG357800

Partner of Y14 and

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008395
Physical Location & Seq
Reverse (-)
37558260 .. 37561677
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG357800.1

Sequence Viewer

Length: 699 bp
ATGGCGAATCGCGGAGGCGGAGGCGGAGCAGATCAGGATCTGCAATTGACGGAGGAGCTTAGCAAAACCCTAAAACAAGGGGAGAGAATTCTGGCGCCAACCCGAAGACCCGACGGCACGCTCCGCAAACCCATCCGCATTCGCGCCGGTTATGTTCCCCAGGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGTCCTCACAGGCTGGTCCCCCAGGTTTTGATGATACTACTCCCGTCGTCGCCGATGCCAAACCCAAGACCAAGTCTGTAAAGAGGAATGAAAGAAAGAAGGAGAAGCGGCTGCAGGCTGCTCTTGAAAAGGAGAAAACCTCAGAAGAAGCGGAAACTGGGGATACTAAGGAGGAAGAGCTACCTGCTCAAGATGTAGGTCATGCACCAGCATCAGTCCAGTCATTGACATCTCAGATGAACGAGCTTGGTGTTTCTTCTAATTCTGCTCTAGTTACCCCTTCCTCTGACTCAACAGAGGATTCAAATCCAGGAGCTCCAGTTCAAGATATTGATAAAAAAATCCGAGCTCTCAAAAAAAAGATTCGACTTGCAGAAGCTCAACAGCAGAAAACTCATCAGCCAGAGCAGTTGGAAAAGTTAACGAAACTTGAAGGATGGCGTCAGGAGCTAAAGCTTTTGGAGGATAAAAAGAAAGCTGAATCATGA

Protein Analysis

232

Amino Acids

25.55

Weight (kDa)

8.86

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mago-bind PF09282 27 - 53 5.9e-13 Mago binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 2 cut(s) 12, 144
AciI CCGC 7 cut(s) 12, 18, 24, 124, 136, 319, 362
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 95, 652
AgsI TTSAA 4 cut(s) 338, 516, 536, 644
AjnI CCWGG 3 cut(s) 159, 232, 520
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 9 cut(s) 58, 391, 457, 527, 560, 590, 661, 667, 689
AluI AGCT 9 cut(s) 58, 391, 457, 527, 560, 590, 661, 667, 689
Alw21I GWGCWC 2 cut(s) 529, 562
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 322, 329
ApoI RAATTY 1 cut(s) 87
AspLEI GCGC 2 cut(s) 97, 146
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 2 cut(s) 529, 562
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 529, 562
BbvI GCAGC 2 cut(s) 309, 316
BccI CCATC 2 cut(s) 140, 642
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 3 cut(s) 161, 234, 522
BciVI GTATCC 1 cut(s) 367
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 3 cut(s) 320, 323, 330
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 321, 324, 331
Bme1390I CCNGG 3 cut(s) 161, 234, 522
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 96, 229
BmrFI CCNGG 3 cut(s) 161, 234, 522
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 256, 431
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 112
BplI GAGNNNNNCTC 4 cut(s) 200, 232, 335, 367
BpmI CTGGAG 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 384
BsaBI GATNNNNATC 2 cut(s) 36, 516
BsaHI GRCGYC 2 cut(s) 95, 652
BsaJI CCNNGG 2 cut(s) 159, 232
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 3 cut(s) 373, 430, 530
Bse8I GATNNNNATC 2 cut(s) 36, 516
BseBI CCWGG 3 cut(s) 161, 234, 522
BseDI CCNNGG 2 cut(s) 159, 232
BseGI GGATG 2 cut(s) 132, 653
BseJI GATNNNNATC 2 cut(s) 36, 516
BseMII CTCAG 2 cut(s) 366, 458
BseNI ACTGG 3 cut(s) 373, 430, 530
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 309, 316
Bsh1236I CGCG 2 cut(s) 12, 144
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 529, 562
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 529, 562
Bsp143I GATC 2 cut(s) 31, 37
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 7 cut(s) 12, 18, 24, 124, 136, 319, 362
BspCNI CTCAG 2 cut(s) 365, 457
BspFNI CGCG 2 cut(s) 12, 144
BspHI TCATGA 1 cut(s) 695
BspLI GGNNCC 2 cut(s) 96, 229
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 3 cut(s) 373, 430, 530
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 159, 232
BssMI GATC 2 cut(s) 31, 37
BssNI GRCGYC 2 cut(s) 95, 652
Bst2UI CCWGG 3 cut(s) 161, 234, 522
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 2 cut(s) 95, 652
BstC8I GCNNGC 2 cut(s) 119, 327
BstDEI CTNAG 4 cut(s) 59, 352, 378, 444
BstF5I GGATG 2 cut(s) 132, 653
BstFNI CGCG 2 cut(s) 12, 144
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 97, 146
BstKTI GATC 2 cut(s) 34, 40
BstMBI GATC 2 cut(s) 31, 37
BstMWI GCNNNNNNNGC 2 cut(s) 123, 658
BstNI CCWGG 3 cut(s) 161, 234, 522
BstSCI CCNGG 3 cut(s) 159, 232, 520
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 2 cut(s) 12, 144
BstV1I GCAGC 2 cut(s) 309, 316
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 132, 653
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 119, 327
CaiI CAGNNNCTG 1 cut(s) 40
CciI TCATGA 1 cut(s) 695
CfoI GCGC 2 cut(s) 97, 146
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 641
CviAII CATG 2 cut(s) 413, 696
DdeI CTNAG 4 cut(s) 59, 352, 378, 444
DinI GGCGCC 1 cut(s) 96
DpnI GATC 2 cut(s) 33, 39
DpnII GATC 2 cut(s) 31, 37
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 2 cut(s) 33, 39
Ecl136II GAGCTC 2 cut(s) 527, 560
Eco24I GRGCYC 2 cut(s) 529, 562
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 2 cut(s) 527, 560
EcoICRI GAGCTC 2 cut(s) 527, 560
EcoRI GAATTC 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 159, 232, 520
EcoT38I GRGCYC 2 cut(s) 529, 562
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
FaeI CATG 2 cut(s) 416, 699
FaiI YATR 3 cut(s) 153, 414, 697
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 412, 695
Fnu4HI GCNGC 3 cut(s) 320, 323, 330
FokI GGATG 2 cut(s) 119, 660
FriOI GRGCYC 2 cut(s) 529, 562
Fsp4HI GCNGC 3 cut(s) 320, 323, 330
FspBI CTAG 1 cut(s) 482
GlaI GCGC 2 cut(s) 96, 145
GluI GCNGC 3 cut(s) 320, 323, 330
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 98
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 641
HhaI GCGC 2 cut(s) 97, 146
Hin1I GRCGYC 2 cut(s) 95, 652
Hin1II CATG 2 cut(s) 416, 699
Hin6I GCGC 2 cut(s) 95, 144
HinP1I GCGC 2 cut(s) 95, 144
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 5 cut(s) 7, 500, 512, 574, 692
HpaI GTTAAC 1 cut(s) 633
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 4 cut(s) 355, 447, 499, 557
Hpy188III TCNNGA 6 cut(s) 35, 335, 401, 536, 656, 696
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 3 cut(s) 116, 260, 263
HpyAV CCTTC 3 cut(s) 304, 501, 638
HpyCH4V TGCA 4 cut(s) 43, 325, 416, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 658
HpyF3I CTNAG 4 cut(s) 59, 352, 378, 444
Hsp92I GRCGYC 2 cut(s) 95, 652
Hsp92II CATG 2 cut(s) 416, 699
HspAI GCGC 2 cut(s) 95, 144
KasI GGCGCC 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 31, 37
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 6 cut(s) 26, 55, 126, 524, 532, 658
Lsp1109I GCAGC 2 cut(s) 309, 316
LweI GCATC 2 cut(s) 256, 431
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 33, 39
MboI GATC 2 cut(s) 31, 37
MboII GAAGA 4 cut(s) 117, 368, 398, 459
MfeI CAATTG 1 cut(s) 44
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 529, 562
MluCI AATT 3 cut(s) 44, 87, 472
Mly113I GGCGCC 1 cut(s) 95
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 603
MseI TTAA 1 cut(s) 632
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 161, 234, 522
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 3 cut(s) 161, 234, 522
MvnI CGCG 2 cut(s) 12, 144
MwoI GCNNNNNNNGC 2 cut(s) 123, 658
NarI GGCGCC 1 cut(s) 95
NdeII GATC 2 cut(s) 31, 37
NlaIII CATG 2 cut(s) 416, 699
NlaIV GGNNCC 2 cut(s) 96, 229
PagI TCATGA 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 7, 512, 574, 692
PflFI GACNNNGTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 321, 324, 331
PleI GAGTC 1 cut(s) 494
PluTI GGCGCC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 494
Psp124BI GAGCTC 2 cut(s) 529, 562
Psp6I CCWGG 3 cut(s) 159, 232, 520
PspGI CCWGG 3 cut(s) 159, 232, 520
PspN4I GGNNCC 2 cut(s) 96, 229
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 283
SacI GAGCTC 2 cut(s) 529, 562
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 3 cut(s) 320, 323, 330
Sau3AI GATC 2 cut(s) 31, 37
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 3 cut(s) 161, 234, 522
SduI GDGCHC 2 cut(s) 529, 562
SfaNI GCATC 2 cut(s) 256, 431
SfcI CTRYAG 1 cut(s) 323
SfoI GGCGCC 1 cut(s) 96
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 44, 87, 472
SsiI CCGC 7 cut(s) 12, 18, 24, 124, 136, 319, 362
SspDI GGCGCC 1 cut(s) 94
SspMI CTAG 1 cut(s) 482
SstI GAGCTC 2 cut(s) 529, 562
StyD4I CCNGG 3 cut(s) 159, 232, 520
TaqI TCGA 1 cut(s) 577
TasI AATT 3 cut(s) 44, 87, 472
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 4 cut(s) 7, 512, 574, 692
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TseI GCWGC 2 cut(s) 322, 329
TspDTI ATGAA 2 cut(s) 315, 464
TspGWI ACGGA 1 cut(s) 65
Tth111I GACNNNGTC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 87
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.