Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008395

Physical Location & Seq

Genomic Coordinates Reverse (-)

48018163 .. 48022532

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG360800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGAATCGCGGAGGCGGAGGAGATCAGGATCTGCAATTGACGGAGGAGCTTAGCAAAACCCTAAAACAAGGGGAGAGAATTCTGGCGCCAACCCGAAGACCCGACGGCACGCTCCGCAAACCCATCCGCATTCGCGCTGGTTATGTTCCCCAGGAGGAAGTCGCCATTTACCAATCCAAAGGTGCTTTGTGGAAAAAGGAGATGTCCTCACAGGCTGGTCCCCCAGGTTTTGATGATACTACTCCCGTCGCCGCCGATGCCAAACCCAAGACCAAGTCTGTAAAGAGGAATGAAAGAAAGAAGGAGAAGCGGCTGCAGGCTGCTCTTGAAAAGGAGAAAACCTCAGAAGAAGCGGAAACTGGGGATACTAAGGAGGAAGAGCTACCTGCTCAAGATGTAGGTCATGCACCAGCATCAGTCCAGTCATTGACATCTCAGATGAACGAGCTTGGTGTTTCTTCTAATTCTGCTCTAGTTACCCCTTCCTCTGACTCAACAGAGGATTCAAATCCAGGAGCTCCAGTTCAAGATATTGATAAAAAAATCCGAGCTCTCAAAAAAAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0008150 GO:0009893 GO:0010468 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0060255 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Mago-bind

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

8.67

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago-bind	PF09282	25 - 51	4.5e-13	Mago binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400 AT1G11400
fragaria_vesca	FvH4_5g30080
malus_domestica	MD08G1225100.v1.1 MD15G1418700.v1.1
prunus_persica	Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1 Prupe.1G562800_v2.0.a1
pyrus_communis	pycom08g19640 pycom15g37170
rosa_chinensis	RchiOBHm_Chr7g0224271
rosa_laevigata	RLG00000001908
rosa_multiflora	Rmu_sc0008008.1_g000016
rosa_rugosa	Rorug07G0221800
rosa_samantha	Rh7AG366900 Rh7BG357800 Rh7CG385400 Rh7DG360800
rosa_wichuraiana	Rw7G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	2 cut(s)	12, 138
AciI	CCGC	7 cut(s)	12, 18, 118, 130, 255, 313, 356
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	332, 510, 530
AjnI	CCWGG	3 cut(s)	153, 226, 514
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	5 cut(s)	52, 385, 451, 521, 554
AluI	AGCT	5 cut(s)	52, 385, 451, 521, 554
Alw21I	GWGCWC	2 cut(s)	523, 556
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	316, 323
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	91, 140
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	523, 556
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	523, 556
BbvI	GCAGC	2 cut(s)	303, 310
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	3 cut(s)	155, 228, 516
BciVI	GTATCC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	255, 314, 317, 324
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	4 cut(s)	256, 315, 318, 325
Bme1390I	CCNGG	3 cut(s)	155, 228, 516
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	90, 223
BmrFI	CCNGG	3 cut(s)	155, 228, 516
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	250, 425
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 329, 361
BpmI	CTGGAG	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	378
BsaBI	GATNNNNATC	2 cut(s)	30, 510
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	153, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	3 cut(s)	367, 424, 524
Bse8I	GATNNNNATC	2 cut(s)	30, 510
BseBI	CCWGG	3 cut(s)	155, 228, 516
BseDI	CCNNGG	2 cut(s)	153, 226
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	2 cut(s)	30, 510
BseMII	CTCAG	2 cut(s)	360, 452
BseNI	ACTGG	3 cut(s)	367, 424, 524
BseRI	GAGGAG	2 cut(s)	36, 62
BseXI	GCAGC	2 cut(s)	303, 310
Bsh1236I	CGCG	2 cut(s)	12, 138
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	523, 556
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	523, 556
Bsp143I	GATC	2 cut(s)	25, 31
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	7 cut(s)	12, 18, 118, 130, 255, 313, 356
BspCNI	CTCAG	2 cut(s)	359, 451
BspFNI	CGCG	2 cut(s)	12, 138
BspLI	GGNNCC	2 cut(s)	90, 223
BspMAI	CTGCAG	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	367, 424, 524
BssECI	CCNNGG	2 cut(s)	153, 226
BssMI	GATC	2 cut(s)	25, 31
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	155, 228, 516
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	113, 321
BstDEI	CTNAG	4 cut(s)	53, 346, 372, 438
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	2 cut(s)	12, 138
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 140
BstKTI	GATC	2 cut(s)	28, 34
BstMBI	GATC	2 cut(s)	25, 31
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 260
BstNI	CCWGG	3 cut(s)	155, 228, 516
BstSCI	CCNGG	3 cut(s)	153, 226, 514
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	2 cut(s)	12, 138
BstV1I	GCAGC	2 cut(s)	303, 310
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	113, 321
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	2 cut(s)	91, 140
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	8 cut(s)	52, 218, 316, 323, 385, 451, 521, 554
CviKI_1	RGCY	8 cut(s)	52, 218, 316, 323, 385, 451, 521, 554
DdeI	CTNAG	4 cut(s)	53, 346, 372, 438
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	2 cut(s)	27, 33
DpnII	GATC	2 cut(s)	25, 31
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	2 cut(s)	521, 554
Eco24I	GRGCYC	2 cut(s)	523, 556
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	2 cut(s)	521, 554
EcoICRI	GAGCTC	2 cut(s)	521, 554
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	153, 226, 514
EcoT38I	GRGCYC	2 cut(s)	523, 556
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	410
FaiI	YATR	3 cut(s)	147, 408, 571
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	255, 314, 317, 324
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	523, 556
Fsp4HI	GCNGC	4 cut(s)	255, 314, 317, 324
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	2 cut(s)	90, 139
GluI	GCNGC	4 cut(s)	255, 314, 317, 324
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	2 cut(s)	91, 140
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	2 cut(s)	89, 138
HinP1I	GCGC	2 cut(s)	89, 138
HinfI	GANTC	3 cut(s)	7, 494, 506
Hpy188I	TCNGA	4 cut(s)	349, 441, 493, 551
Hpy188III	TCNNGA	4 cut(s)	29, 329, 395, 530
Hpy99I	CGWCG	2 cut(s)	110, 254
HpyAV	CCTTC	2 cut(s)	298, 495
HpyCH4V	TGCA	3 cut(s)	37, 319, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 260
HpyF3I	CTNAG	4 cut(s)	53, 346, 372, 438
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	2 cut(s)	89, 138
KasI	GGCGCC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	25, 31
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	4 cut(s)	49, 120, 518, 526
Lsp1109I	GCAGC	2 cut(s)	303, 310
LweI	GCATC	2 cut(s)	250, 425
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	27, 33
MboI	GATC	2 cut(s)	25, 31
MboII	GAAGA	4 cut(s)	111, 362, 392, 453
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	523, 556
MluCI	AATT	3 cut(s)	38, 81, 466
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	488
MspR9I	CCNGG	3 cut(s)	155, 228, 516
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	3 cut(s)	155, 228, 516
MvnI	CGCG	2 cut(s)	12, 138
MwoI	GCNNNNNNNGC	2 cut(s)	117, 260
NarI	GGCGCC	1 cut(s)	89
NdeII	GATC	2 cut(s)	25, 31
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	2 cut(s)	90, 223
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	7, 506
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	256, 315, 318, 325
PleI	GAGTC	1 cut(s)	488
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	488
Psp124BI	GAGCTC	2 cut(s)	523, 556
Psp6I	CCWGG	3 cut(s)	153, 226, 514
PspGI	CCWGG	3 cut(s)	153, 226, 514
PspN4I	GGNNCC	2 cut(s)	90, 223
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	277
SacI	GAGCTC	2 cut(s)	523, 556
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	4 cut(s)	255, 314, 317, 324
Sau3AI	GATC	2 cut(s)	25, 31
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	155, 228, 516
SduI	GDGCHC	2 cut(s)	523, 556
SfaNI	GCATC	2 cut(s)	250, 425
SfcI	CTRYAG	1 cut(s)	317
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	3 cut(s)	38, 81, 466
SsiI	CCGC	7 cut(s)	12, 18, 118, 130, 255, 313, 356
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	2 cut(s)	523, 556
StyD4I	CCNGG	3 cut(s)	153, 226, 514
TasI	AATT	3 cut(s)	38, 81, 466
TauI	GCSGC	2 cut(s)	257, 316
TfiI	GAWTC	2 cut(s)	7, 506
TseI	GCWGC	2 cut(s)	316, 323
TspDTI	ATGAA	2 cut(s)	309, 458
TspGWI	ACGGA	1 cut(s)	59
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.