Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005536

Physical Location & Seq

Genomic Coordinates Reverse (-)

5797143 .. 5799314

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1082800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTCAGTCATGGCAGAGCAAGCGCGAGTGGGCTCATAAACGGGGCAAAGGAGGCGGTGGCACTCATCACCCAGCCGCGCACGTTAGCTTCTCGTACCCTCTTCCCTTCTCGCCTAGCTAACGAACGCCTCGCATCCCATTCTCCCCGCCCCTACTCCACCATGAACCGAGACGACGACGACCCAATCGAAGCTATATTCCGGCAGAAGCGGTTGCTCCGGTCCAGAATCCGCAAAGAGCTCAAGAACATGGACCCGGTTCGGAGGTCCGAAGAAGGTAGTCCATGCTGCAATTCAGAGCATTGTTTTAAATGCTCCTGGTTCCAATCTAGTAAGAGCATATGCGCTTACATAAGCCCTCCTGCTTTACGAGAAGTCGATACGTCAAGAATTGTTTCAGAAATTCTATCCAAACCTGCCAATGGTGCTGAGGGTGATGTGCAGAACAGGAAAAAGCTTTTTGTTCCTCGTGTGGAGGATAGGAATAGCAACATGAGGATGCTTAGGATTTCCAGTGTTGATGATCTGATCGTGAACTCGATGGACATTTCGGAGCCAGCTCTTTTGGATTGTGATGGGAAACAACACGAAGATGTTTTGGAGGCAAGCGATCCAGTTGACTTGTTCATCCTACCCGGTGTTTACTATGATTTGTTCCTAAAGAAGTACCAAGAGCTTACGAAGGAACGACAATGGAAGGAGCCCCTTCGAGTTGCGCTGTCATATTCTGTACAGATCGTGGAGGAAGGAGCCATAGCTGTCACTTCAAATGATTTTTCTGTGGATGCTCTTGTATCTCCAGCCGGTGTCATTCCCATAAGCCCTGCTGCTCAGGAGAGGAGTATGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

284

Amino Acids

31.66

Weight (kDa)

6.47

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410
malus_domestica	MD16G1082800.v1.1
prunus_persica	Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1
pyrus_communis	pycom16g07170 pycom16g23340
rosa_chinensis	RchiOBHm_Chr4g0445021
rosa_laevigata	RLG00000005776
rosa_multiflora	Rmu_sc0003784.1_g000012
rosa_roxburghii	Rroxscaffold_5G00385550
rosa_rugosa	Rorug04G0357700 Rorug04G0357800 Rorug04G0357800 Rorug04G0357900
rosa_samantha	Rh4AG419300 Rh4BG431000 Rh4CG445400 Rh4DG426900
rosa_wichuraiana	Rw4G035900 Rw4G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccII	CGCG	2 cut(s)	26, 79
AciI	CCGC	5 cut(s)	56, 77, 148, 211, 232
AclWI	GGATC	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	3 cut(s)	97, 668, 732
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	768
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	8 cut(s)	89, 119, 194, 241, 457, 560, 676, 758
AluI	AGCT	8 cut(s)	89, 119, 194, 241, 457, 560, 676, 758
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	605
ApeKI	GCWGC	2 cut(s)	288, 827
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	4 cut(s)	26, 81, 347, 718
AspS9I	GGNCC	3 cut(s)	222, 253, 267
AsuC2I	CCSGG	2 cut(s)	257, 636
AsuHPI	GGTGA	2 cut(s)	61, 446
AvaII	GGWCC	3 cut(s)	222, 253, 267
BanII	GRGCYC	3 cut(s)	36, 243, 705
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	275, 814
BccI	CCATC	2 cut(s)	535, 569
BciT130I	CCWGG	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	257, 636
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	116, 330
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	77, 289, 828
BlsI	GCNGC	3 cut(s)	78, 290, 829
Bme1390I	CCNGG	3 cut(s)	257, 319, 636
Bme18I	GGWCC	3 cut(s)	222, 253, 267
BmgT120I	GGNCC	3 cut(s)	222, 253, 267
BmiI	GGNNCC	5 cut(s)	255, 323, 555, 702, 751
BmrFI	CCNGG	3 cut(s)	257, 319, 636
BmsI	GCATC	3 cut(s)	143, 489, 775
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	3 cut(s)	429, 503, 831
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	257, 636
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	2 cut(s)	513, 614
BseBI	CCWGG	1 cut(s)	319
BseGI	GGATG	4 cut(s)	134, 504, 627, 790
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	420, 845
BseNI	ACTGG	2 cut(s)	513, 614
BseXI	GCAGC	2 cut(s)	275, 814
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	2 cut(s)	26, 79
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	5 cut(s)	202, 220, 257, 636, 804
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	36, 243, 705
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	523, 528, 610, 735
BspACI	CCGC	5 cut(s)	56, 77, 148, 211, 232
BspCNI	CTCAG	2 cut(s)	421, 844
BspFNI	CGCG	2 cut(s)	26, 79
BspLI	GGNNCC	5 cut(s)	255, 323, 555, 702, 751
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	803
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	513, 614
BssAI	RCCGGY	1 cut(s)	803
BssMI	GATC	4 cut(s)	523, 528, 610, 735
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	22, 558, 607
BstDEI	CTNAG	3 cut(s)	429, 503, 831
BstF5I	GGATG	4 cut(s)	134, 504, 627, 790
BstFNI	CGCG	2 cut(s)	26, 79
BstHHI	GCGC	4 cut(s)	26, 81, 347, 718
BstKTI	GATC	4 cut(s)	526, 531, 613, 738
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	4 cut(s)	523, 528, 610, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 53, 425
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	255, 317, 634
BstUI	CGCG	2 cut(s)	26, 79
BstV1I	GCAGC	2 cut(s)	275, 814
BtsCI	GGATG	4 cut(s)	134, 504, 627, 790
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	22, 558, 607
CfoI	GCGC	4 cut(s)	26, 81, 347, 718
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	222, 253, 267
Csp6I	GTAC	3 cut(s)	96, 667, 731
CviAII	CATG	5 cut(s)	11, 163, 250, 285, 493
CviQI	GTAC	3 cut(s)	96, 667, 731
DdeI	CTNAG	3 cut(s)	429, 503, 831
DpnI	GATC	4 cut(s)	525, 530, 612, 737
DpnII	GATC	4 cut(s)	523, 528, 610, 735
DraI	TTTAAA	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	3 cut(s)	36, 243, 705
Eco47I	GGWCC	3 cut(s)	222, 253, 267
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	3 cut(s)	36, 243, 705
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	5 cut(s)	14, 166, 253, 288, 496
FatI	CATG	5 cut(s)	10, 162, 249, 284, 492
FauI	CCCGC	1 cut(s)	155
FauNDI	CATATG	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	77, 289, 828
FokI	GGATG	4 cut(s)	121, 511, 614, 797
FriOI	GRGCYC	3 cut(s)	36, 243, 705
Fsp4HI	GCNGC	3 cut(s)	77, 289, 828
FspBI	CTAG	2 cut(s)	116, 330
GlaI	GCGC	4 cut(s)	25, 80, 346, 717
GluI	GCNGC	3 cut(s)	77, 289, 828
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	783
HapII	CCGG	5 cut(s)	202, 220, 257, 636, 804
HhaI	GCGC	4 cut(s)	26, 81, 347, 718
Hin1II	CATG	5 cut(s)	14, 166, 253, 288, 496
Hin6I	GCGC	4 cut(s)	24, 79, 345, 716
HinP1I	GCGC	4 cut(s)	24, 79, 345, 716
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	5 cut(s)	202, 220, 257, 636, 804
HphI	GGTGA	2 cut(s)	61, 446
Hpy166II	GTNNAC	3 cut(s)	535, 619, 643
Hpy188I	TCNGA	6 cut(s)	264, 271, 298, 400, 528, 553
Hpy188III	TCNNGA	5 cut(s)	225, 244, 387, 532, 833
Hpy8I	GTNNAC	3 cut(s)	535, 619, 643
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	6 cut(s)	117, 269, 676, 691, 716, 740
HpyCH4IV	ACGT	2 cut(s)	83, 383
HpyCH4V	TGCA	2 cut(s)	291, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 53, 425
HpyF3I	CTNAG	3 cut(s)	429, 503, 831
HpySE526I	ACGT	2 cut(s)	83, 383
Hsp92II	CATG	5 cut(s)	14, 166, 253, 288, 496
HspAI	GCGC	4 cut(s)	24, 79, 345, 716
Kzo9I	GATC	4 cut(s)	523, 528, 610, 735
LmnI	GCTCC	5 cut(s)	222, 320, 553, 700, 749
Lsp1109I	GCAGC	2 cut(s)	275, 814
LweI	GCATC	3 cut(s)	143, 489, 775
MaeI	CTAG	2 cut(s)	116, 330
MaeII	ACGT	2 cut(s)	83, 383
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	525, 530, 612, 737
MboI	GATC	4 cut(s)	523, 528, 610, 735
MboII	GAAGA	3 cut(s)	94, 284, 602
MhlI	GDGCHC	3 cut(s)	36, 243, 705
MluCI	AATT	3 cut(s)	292, 390, 402
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	497, 591
MspI	CCGG	5 cut(s)	202, 220, 257, 636, 804
MspR9I	CCNGG	3 cut(s)	257, 319, 636
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	2 cut(s)	26, 79
MwoI	GCNNNNNNNGC	3 cut(s)	21, 53, 425
NciI	CCSGG	2 cut(s)	257, 636
NdeI	CATATG	1 cut(s)	341
NdeII	GATC	4 cut(s)	523, 528, 610, 735
NlaIII	CATG	5 cut(s)	14, 166, 253, 288, 496
NlaIV	GGNNCC	5 cut(s)	255, 323, 555, 702, 751
NmuCI	GTSAC	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	78, 290, 829
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	5 cut(s)	255, 323, 555, 702, 751
PspPI	GGNCC	3 cut(s)	222, 253, 267
RsaI	GTAC	3 cut(s)	97, 668, 732
RsaNI	GTAC	3 cut(s)	96, 667, 731
RseI	CAYNNNNRTG	2 cut(s)	497, 591
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	77, 289, 828
Sau3AI	GATC	4 cut(s)	523, 528, 610, 735
Sau96I	GGNCC	3 cut(s)	222, 253, 267
ScrFI	CCNGG	3 cut(s)	257, 319, 636
SduI	GDGCHC	3 cut(s)	36, 243, 705
SfaNI	GCATC	3 cut(s)	143, 489, 775
SinI	GGWCC	3 cut(s)	222, 253, 267
SmiMI	CAYNNNNRTG	2 cut(s)	497, 591
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	292, 390, 402
SsiI	CCGC	5 cut(s)	56, 77, 148, 211, 232
SspMI	CTAG	2 cut(s)	116, 330
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	255, 317, 634
TaiI	ACGT	2 cut(s)	86, 386
TaqI	TCGA	4 cut(s)	189, 378, 539, 709
TasI	AATT	3 cut(s)	292, 390, 402
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	2 cut(s)	288, 827
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	2 cut(s)	179, 616
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	222, 253, 267
XapI	RAATTY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	2 cut(s)	116, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.