Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005536

Physical Location & Seq

Genomic Coordinates Reverse (-)

24165488 .. 24167546

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23340.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTACTATTTAATTTACCTTTTATTTTTTTTTCTTTAAATTATAGTCCTATCCGACCCGAACTCTTCAACCGCGCCTACGCGCAACCAAAGAGCGCCAAATTAACGGAAAAACCCGCAAAAGCACGAGAGCCACGAAGCATGTTCAGTCACAGCAGAGCAAGCGCGAGTGGGCTCATAAACGGGGCAAAGGAGGCGGTGGCGCTCATCACCCAGCCGCGCACGTTAGCTTCTCGTACCCTCTTCCCTTCTCGCTTAGCTAACGAACGCCTCGCATCCCATTCTCACCGCCCCTACGCCACCATGAACCGAGACGACAACGACCCAATCGAAGCTATATTCCGGCAGAAGCGGTTGCTACGGTCCAGAATCCGCAAAGAGCTCAAGAATATGGACCCGGTTCGGAGGTCCGAAGAAGATGCTGCAATTCAGAGCATTGTTTTAAATGCTCCCTGGTTCCAATCCAGTAAGAGCATATGCGCTTACATAAGCTCTTCTGCTTTACGAGAAGTCGATACGTCAAGAATTGTTTCAGAAATTCTATCCAAACCTGCCAATGAGGGTGATGTGCAGAACAGGAAAAAGCTTTATGTTCCGCGTGTGGAGGATAGGAATAGCAACATGAGGATGCTTAGGATTTCCAGCGTTGATGATCTGATCGTGAACTCGATGGACATTTTGGAGCCAGCTCTTTTGGATTCTGATGGGAAACAACACGAAGATGTTTTGGAGGCAAGCGATCCAGTTGACTTGTTCATCCTACCCGGGCTTGCATTTGACAGATGTGGAAGGCGTTTAGGCCGTGGTGGAGGTTACTATGATTTGTTCCTAAAGAAGTACCAAGAGCTTACAAAGCAACGACAATGGAAGGAGCCCCTTCGAGTTGCGCTGTCATATTCTGTACAGATCGTGGAGGAAGGAGCCATAGCTGTCACTTCAAATGATGTTTCTGTGGATGCTCTTGCATCTCCAGCCGGTGTCATTCCCATAAGCCCCGCTGCTCAGGAGAGGAGCATGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

341

Amino Acids

38.16

Weight (kDa)

9.43

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410
malus_domestica	MD16G1082800.v1.1
prunus_persica	Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1
pyrus_communis	pycom16g07170 pycom16g23340
rosa_chinensis	RchiOBHm_Chr4g0445021
rosa_laevigata	RLG00000005776
rosa_multiflora	Rmu_sc0003784.1_g000012
rosa_roxburghii	Rroxscaffold_5G00385550
rosa_rugosa	Rorug04G0357700 Rorug04G0357800 Rorug04G0357800 Rorug04G0357900
rosa_samantha	Rh4AG419300 Rh4BG431000 Rh4CG445400 Rh4DG426900
rosa_wichuraiana	Rw4G035900 Rw4G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AccII	CGCG	5 cut(s)	75, 83, 167, 220, 598
AciI	CCGC	9 cut(s)	73, 117, 197, 218, 289, 352, 373, 596, 996
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	4 cut(s)	6, 238, 839, 903
AgsI	TTSAA	2 cut(s)	70, 939
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	9 cut(s)	230, 260, 335, 382, 492, 586, 689, 847, 929
AluI	AGCT	9 cut(s)	230, 260, 335, 382, 492, 586, 689, 847, 929
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	734
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	799
ApeKI	GCWGC	2 cut(s)	422, 998
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	8 cut(s)	77, 85, 98, 167, 205, 222, 482, 889
AspS9I	GGNCC	3 cut(s)	363, 394, 408
AsuC2I	CCSGG	3 cut(s)	398, 765, 766
AsuHPI	GGTGA	3 cut(s)	202, 278, 575
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	363, 394, 408
BanII	GRGCYC	3 cut(s)	177, 384, 876
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	409, 985
BccI	CCATC	2 cut(s)	664, 698
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	3 cut(s)	398, 765, 766
BcoDI	GTCTC	1 cut(s)	306
BfoI	RGCGCY	2 cut(s)	99, 206
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	218, 423, 999
BlpI	GCTNAGC	1 cut(s)	256
BlsI	GCNGC	3 cut(s)	219, 424, 1000
Bme1390I	CCNGG	4 cut(s)	398, 454, 765, 766
Bme18I	GGWCC	3 cut(s)	363, 394, 408
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	3 cut(s)	363, 394, 408
BmiI	GGNNCC	5 cut(s)	396, 458, 684, 873, 922
BmrFI	CCNGG	4 cut(s)	398, 454, 765, 766
BmsI	GCATC	5 cut(s)	284, 409, 618, 946, 974
BpmI	CTGGAG	1 cut(s)	954
Bpu10I	CCTNAGC	2 cut(s)	632, 1002
Bpu1102I	GCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	3 cut(s)	398, 765, 766
BsaJI	CCNNGG	3 cut(s)	452, 764, 802
Bse118I	RCCGGY	1 cut(s)	974
Bse1I	ACTGG	2 cut(s)	465, 743
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	452, 764, 802
BseGI	GGATG	4 cut(s)	275, 633, 756, 961
BseMII	CTCAG	1 cut(s)	1016
BseNI	ACTGG	2 cut(s)	465, 743
BseXI	GCAGC	2 cut(s)	409, 985
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	5 cut(s)	75, 83, 167, 220, 598
BshFI	GGCC	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	4 cut(s)	343, 398, 765, 975
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	801
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	3 cut(s)	177, 384, 876
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	4 cut(s)	652, 657, 739, 906
Bsp1720I	GCTNAGC	1 cut(s)	256
BspACI	CCGC	9 cut(s)	73, 117, 197, 218, 289, 352, 373, 596, 996
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	1 cut(s)	1015
BspFNI	CGCG	5 cut(s)	75, 83, 167, 220, 598
BspLI	GGNNCC	5 cut(s)	396, 458, 684, 873, 922
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	1 cut(s)	734
BspQI	GCTCTTC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	974
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	2 cut(s)	465, 743
BssAI	RCCGGY	1 cut(s)	974
BssECI	CCNNGG	3 cut(s)	452, 764, 802
BssMI	GATC	4 cut(s)	652, 657, 739, 906
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	71, 248, 499
BstAUI	TGTACA	1 cut(s)	901
BstC8I	GCNNGC	4 cut(s)	163, 687, 736, 771
BstDEI	CTNAG	3 cut(s)	256, 632, 1002
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	4 cut(s)	275, 633, 756, 961
BstFNI	CGCG	5 cut(s)	75, 83, 167, 220, 598
BstH2I	RGCGCY	2 cut(s)	99, 206
BstHHI	GCGC	8 cut(s)	77, 85, 98, 167, 205, 222, 482, 889
BstKTI	GATC	4 cut(s)	655, 660, 742, 909
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	4 cut(s)	652, 657, 739, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 194, 853, 971
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	4 cut(s)	396, 452, 763, 764
BstUI	CGCG	5 cut(s)	75, 83, 167, 220, 598
BstV1I	GCAGC	2 cut(s)	409, 985
BsuRI	GGCC	1 cut(s)	801
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	4 cut(s)	275, 633, 756, 961
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	163, 687, 736, 771
CfoI	GCGC	8 cut(s)	77, 85, 98, 167, 205, 222, 482, 889
Cfr10I	RCCGGY	1 cut(s)	974
Cfr13I	GGNCC	3 cut(s)	363, 394, 408
Cfr9I	CCCGGG	1 cut(s)	764
Csp6I	GTAC	4 cut(s)	5, 237, 838, 902
CviAII	CATG	4 cut(s)	142, 304, 622, 1015
CviQI	GTAC	4 cut(s)	5, 237, 838, 902
DdeI	CTNAG	3 cut(s)	256, 632, 1002
DpnI	GATC	4 cut(s)	654, 659, 741, 908
DpnII	GATC	4 cut(s)	652, 657, 739, 906
DraI	TTTAAA	2 cut(s)	39, 444
Eam1104I	CTCTTC	3 cut(s)	71, 248, 499
EarI	CTCTTC	3 cut(s)	71, 248, 499
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	3 cut(s)	177, 384, 876
Eco47I	GGWCC	3 cut(s)	363, 394, 408
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	452
EcoT38I	GRGCYC	3 cut(s)	177, 384, 876
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	4 cut(s)	145, 307, 625, 1018
FatI	CATG	4 cut(s)	141, 303, 621, 1014
FauI	CCCGC	2 cut(s)	124, 1003
FauNDI	CATATG	1 cut(s)	476
Fnu4HI	GCNGC	3 cut(s)	218, 423, 999
FokI	GGATG	4 cut(s)	262, 640, 743, 968
FriOI	GRGCYC	3 cut(s)	177, 384, 876
Fsp4HI	GCNGC	3 cut(s)	218, 423, 999
GlaI	GCGC	8 cut(s)	76, 84, 97, 166, 204, 221, 481, 888
GluI	GCNGC	3 cut(s)	218, 423, 999
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	954
HaeII	RGCGCY	2 cut(s)	99, 206
HaeIII	GGCC	1 cut(s)	801
HapII	CCGG	4 cut(s)	343, 398, 765, 975
HhaI	GCGC	8 cut(s)	77, 85, 98, 167, 205, 222, 482, 889
Hin1II	CATG	4 cut(s)	145, 307, 625, 1018
Hin6I	GCGC	8 cut(s)	75, 83, 96, 165, 203, 220, 480, 887
HinP1I	GCGC	8 cut(s)	75, 83, 96, 165, 203, 220, 480, 887
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	369, 698
HpaII	CCGG	4 cut(s)	343, 398, 765, 975
HphI	GGTGA	3 cut(s)	202, 278, 575
Hpy166II	GTNNAC	2 cut(s)	664, 748
Hpy188I	TCNGA	7 cut(s)	56, 405, 412, 432, 535, 657, 703
Hpy188III	TCNNGA	5 cut(s)	366, 385, 522, 661, 1004
Hpy8I	GTNNAC	2 cut(s)	664, 748
HpyAV	CCTTC	5 cut(s)	258, 783, 862, 887, 911
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	2 cut(s)	224, 518
HpyCH4V	TGCA	4 cut(s)	425, 571, 773, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 194, 853, 971
HpyF3I	CTNAG	3 cut(s)	256, 632, 1002
HpySE526I	ACGT	2 cut(s)	224, 518
Hsp92II	CATG	4 cut(s)	145, 307, 625, 1018
HspAI	GCGC	8 cut(s)	75, 83, 96, 165, 203, 220, 480, 887
Kzo9I	GATC	4 cut(s)	652, 657, 739, 906
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	5 cut(s)	454, 682, 871, 920, 1011
Lsp1109I	GCAGC	2 cut(s)	409, 985
LweI	GCATC	5 cut(s)	284, 409, 618, 946, 974
MaeII	ACGT	2 cut(s)	224, 518
MaeIII	GTNAC	3 cut(s)	149, 812, 931
MalI	GATC	4 cut(s)	654, 659, 741, 908
MboI	GATC	4 cut(s)	652, 657, 739, 906
MboII	GAAGA	6 cut(s)	58, 235, 425, 428, 486, 731
MhlI	GDGCHC	3 cut(s)	177, 384, 876
MluCI	AATT	6 cut(s)	13, 40, 101, 426, 525, 537
MmeI	TCCRAC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	4 cut(s)	12, 38, 104, 443
MslI	CAYNNNNRTG	2 cut(s)	626, 720
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	4 cut(s)	343, 398, 765, 975
MspR9I	CCNGG	4 cut(s)	398, 454, 765, 766
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	5 cut(s)	75, 83, 167, 220, 598
MwoI	GCNNNNNNNGC	4 cut(s)	162, 194, 853, 971
NciI	CCSGG	3 cut(s)	398, 765, 766
NdeI	CATATG	1 cut(s)	476
NdeII	GATC	4 cut(s)	652, 657, 739, 906
NlaIII	CATG	4 cut(s)	145, 307, 625, 1018
NlaIV	GGNNCC	5 cut(s)	396, 458, 684, 873, 922
NmuCI	GTSAC	2 cut(s)	149, 931
NspI	RCATGY	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	2 cut(s)	133, 327
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	369, 698
PkrI	GCNGC	3 cut(s)	219, 424, 1000
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	5 cut(s)	396, 458, 684, 873, 922
PspPI	GGNCC	3 cut(s)	363, 394, 408
RsaI	GTAC	4 cut(s)	6, 238, 839, 903
RsaNI	GTAC	4 cut(s)	5, 237, 838, 902
RseI	CAYNNNNRTG	2 cut(s)	626, 720
SacI	GAGCTC	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	4 cut(s)	12, 38, 104, 443
SatI	GCNGC	3 cut(s)	218, 423, 999
Sau3AI	GATC	4 cut(s)	652, 657, 739, 906
Sau96I	GGNCC	3 cut(s)	363, 394, 408
ScrFI	CCNGG	4 cut(s)	398, 454, 765, 766
SduI	GDGCHC	3 cut(s)	177, 384, 876
SfaNI	GCATC	5 cut(s)	284, 409, 618, 946, 974
SinI	GGWCC	3 cut(s)	363, 394, 408
SmaI	CCCGGG	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	626, 720
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	6 cut(s)	13, 40, 101, 426, 525, 537
SsiI	CCGC	9 cut(s)	73, 117, 197, 218, 289, 352, 373, 596, 996
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	396, 452, 763, 764
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	2 cut(s)	227, 521
TaqI	TCGA	4 cut(s)	330, 513, 668, 880
TasI	AATT	6 cut(s)	13, 40, 101, 426, 525, 537
TatI	WGTACW	1 cut(s)	901
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	369, 698
Tru1I	TTAA	4 cut(s)	12, 38, 104, 443
Tru9I	TTAA	4 cut(s)	12, 38, 104, 443
TseFI	GTSAC	2 cut(s)	149, 931
TseI	GCWGC	2 cut(s)	422, 998
Tsp45I	GTSAC	2 cut(s)	149, 931
TspDTI	ATGAA	2 cut(s)	320, 745
TspGWI	ACGGA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	764
VpaK11BI	GGWCC	3 cut(s)	363, 394, 408
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	145
XmaI	CCCGGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.