Rorug04G0357700

5-formyltetrahydrofolate cyclo-ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
53072442 .. 53076473
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0357700.1

Sequence Viewer

Length: 1776 bp
ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTCTTTACTCCGCTGAGAGTTGTCCACCTTGTTTCTGTAATGAGAGAGTAGGTAGTATCTCCTTCCCCTTTAAAAACACAACACAGAGTCCTGAATGCGGATTGTTCACTGTCAACTGTTCTGACCACCGTAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTCCATTTGGAAAGAATGACTGGATCAAGTTCCGTTTTAATCAATGACAGCCGGCTTCAAGAGCGCATAGAGCGCTTAAAAGGAGATACATGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTACTCCCATCTTCTATACAAACAGCCTTACCCTGTTCAAATGCAACAGCACCCAGGAGAAATCTCCTTACAAGGATCTTAACTATGCCTGCAGGAGTGTAAATCATATTTACTATACTGTATCAAATGATAGTTTTTTATTTGGTCAGATATCAGATGATAGTTTTGAGTGCCCACCCATTCAGATTCCCATACATCCACATTCCCGTCCCAATGTCTATAGCCCTTCTGCATTGACTGCTAAATTCTCCCTTCACGTGCCTTTTACCGAAGAATGTGATCAGGATGAGGAAGGCAAATGTGCCAAAGCAGGTGATCAGATATCCATATTGAAGCTAGGACTAGGTGCAGTGGCTGGCGTTGTGGCTCTAGTGGTTATCTCTTGCTTATTCTTTTGGAAGAAGAAACGGCAAGATCATCTAAATGTTGAGGCTTTTTTAAGGAACTACGGGCCACTTCAAGTTAAAAGATACAATTATTCGGATGTCAGGAACATGACCAACTCCTTCAAAAAAAAGTTGGGGCAAGGGGGCTATGGTGGTGTATACAAAGGAGAGTTAAAAGATGGTCGTCTTGTAGCAGTAAAGGTCTTGAACAGATCAAAAGGTAATGGAGAAGAGTTCATGAATGAGGTTGCAGTCATTAGTAGAACTTCTCATGTCAACATTGTCAGCTTGTTGGGCTTTTGTTTTGAGGGTTCAAAAAGAGCTCTGGTCTATGAATTTATGCCTAATGGATCCCTCGAGAAGTTCATATTTGATGCAAATAACCCCCGAAAAGATCATCACTTGGGATGGGAAGCATTGGAACAAATTTCACTTGGCATTGCTCGAGGACTAGAGTACTTGCATCGTGGGTGCAACACAAGAATTTTGCATTTTGACATTAAGCCTCACAACATTCTTCTTGACGAGAACTTCTCCCCAAAAATTTCTGATTTTGGCCTTGCCAAAATTTGTGATAGGAAAGAAAGTATTGTGTCAATGTTGTGTGCAAGAGGTACTGCTGGTTACATTGCTCCAGAGGTATTCTGTAGAAACTTTGGGGGGGTCTCGCACAAATCTGATGTATACAGTTATGGAATGATGCTTTCAGAGATGGTCGGAGGAAGAAGGAACATTAATGTTAAAGCTGAGGATACTAGTGAGATATATTTTCCACACTGGATTTACAAGCGTCTTGAACTAGATGAGGAACTTGGCCTACAATGTGTCACAAATGAGGAGGACAAAGCAAGAGCAAGGAAGATGATAATTGTGAGCTTGTGGTGCATACAAACTGATCCCTCAAACCGACCAGCGATGAAGGAAGTCATAGAAATGTTGGAAGGGAGTGTAGAGTCCTTGCAGATACCACCCAAGCCTTACTTGTCTTCTCCTCCAAAATCCCCTACAATGGCAGATTCTTCTACTACATTGGTATCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

591

Amino Acids

66.43

Weight (kDa)

6.76

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 285 - 557 3.8e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 286 - 555 2.7e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 647
AccI GTMKAC 2 cut(s) 891, 1416
AciI CCGC 2 cut(s) 60, 147
AclWI GGATC 6 cut(s) 184, 247, 429, 1077, 1090, 1622
AcsI RAATTY 6 cut(s) 590, 1067, 1158, 1215, 1275, 1299
AcvI CACGTG 1 cut(s) 604
AfaI GTAC 2 cut(s) 1190, 1348
AfeI AGCGCT 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 146, 1741
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 9 cut(s) 275, 325, 385, 679, 806, 856, 940, 1047, 1529
AhlI ACTAGT 1 cut(s) 1487
AjnI CCWGG 2 cut(s) 340, 399
AluBI AGCT 5 cut(s) 682, 1020, 1055, 1478, 1608
AluI AGCT 5 cut(s) 682, 1020, 1055, 1478, 1608
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 1 cut(s) 1402
AlwI GGATC 6 cut(s) 184, 247, 429, 1077, 1090, 1622
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 2 cut(s) 1088, 1176
Aor51HI AGCGCT 1 cut(s) 290
AoxI GGCC 4 cut(s) 343, 797, 1288, 1546
ApoI RAATTY 6 cut(s) 590, 1067, 1158, 1215, 1275, 1299
AseI ATTAAT 1 cut(s) 1467
AspLEI GCGC 2 cut(s) 282, 291
AspS9I GGNCC 2 cut(s) 344, 797
AsuHPI GGTGA 1 cut(s) 671
AvaI CYCGRG 2 cut(s) 1088, 1176
BaeGI GKGCMC 1 cut(s) 521
BaeI ACNNNNGTAYC 1 cut(s) 1749
BamHI GGATCC 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 1057
BbrPI CACGTG 1 cut(s) 604
BbsI GAAGAC 3 cut(s) 25, 329, 1710
Bbv12I GWGCWC 1 cut(s) 1057
BbvCI CCTCAGC 1 cut(s) 1479
BccI CCATC 5 cut(s) 197, 362, 905, 1134, 1438
BceAI ACGGC 1 cut(s) 770
BciT130I CCWGG 2 cut(s) 342, 401
BciVI GTATCC 2 cut(s) 203, 1477
BclI TGATCA 2 cut(s) 625, 661
BcoDI GTCTC 1 cut(s) 1402
BcuI ACTAGT 1 cut(s) 1487
BfaI CTAG 6 cut(s) 683, 689, 716, 1184, 1488, 1532
BfmI CTRYAG 3 cut(s) 436, 565, 1378
BfoI RGCGCY 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 647
BfuI GTATCC 2 cut(s) 203, 1477
BmcAI AGTACT 1 cut(s) 1190
Bme1390I CCNGG 2 cut(s) 342, 401
BmeT110I CYCGRG 2 cut(s) 1088, 1176
BmgT120I GGNCC 2 cut(s) 344, 797
BmiI GGNNCC 2 cut(s) 218, 1084
BmrFI CCNGG 2 cut(s) 342, 401
BmsI GCATC 3 cut(s) 1096, 1204, 1422
BpiI GAAGAC 3 cut(s) 25, 329, 1710
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 1350
Bpu10I CCTNAGC 1 cut(s) 1479
BsaAI YACGTR 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 1402
BsaJI CCNNGG 2 cut(s) 9, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1741
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 218, 241, 1514
Bse3DI GCAATG 2 cut(s) 1170, 1359
BseBI CCWGG 2 cut(s) 342, 401
BseDI CCNNGG 2 cut(s) 9, 399
BseGI GGATG 4 cut(s) 541, 637, 835, 1145
BseLI CCNNNNNNNGG 2 cut(s) 146, 1741
BseMI GCAATG 2 cut(s) 1170, 1359
BseMII CTCAG 2 cut(s) 54, 1470
BseNI ACTGG 3 cut(s) 218, 241, 1514
BseRI GAGGAG 2 cut(s) 1583, 1713
BseSI GKGCMC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 4 cut(s) 345, 799, 1290, 1548
BsiHKAI GWGCWC 1 cut(s) 1057
BsiHKCI CYCGRG 2 cut(s) 1088, 1176
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 2 cut(s) 146, 1741
BsmAI GTCTC 1 cut(s) 1402
BsmFI GGGAC 1 cut(s) 540
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 4 cut(s) 345, 799, 1290, 1548
Bso31I GGTCTC 1 cut(s) 1402
BsoBI CYCGRG 2 cut(s) 1088, 1176
Bsp1286I GDGCHC 2 cut(s) 521, 1057
BspACI CCGC 2 cut(s) 60, 147
BspANI GGCC 4 cut(s) 345, 799, 1290, 1548
BspCNI CTCAG 2 cut(s) 55, 1471
BspHI TCATGA 1 cut(s) 969
BspLI GGNNCC 2 cut(s) 218, 1084
BspMAI CTGCAG 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 6 cut(s) 184, 247, 429, 1077, 1090, 1622
BspTNI GGTCTC 1 cut(s) 1402
BsrDI GCAATG 2 cut(s) 1170, 1359
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 3 cut(s) 218, 241, 1514
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 9, 399
BssNAI GTATAC 2 cut(s) 892, 1417
Bst1107I GTATAC 2 cut(s) 892, 1417
Bst2UI CCWGG 2 cut(s) 342, 401
Bst4CI ACNGT 6 cut(s) 10, 160, 167, 179, 466, 1421
Bst6I CTCTTC 1 cut(s) 957
BstAPI GCANNNNNTGC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 269, 436, 703
BstDEI CTNAG 2 cut(s) 63, 1479
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 541, 637, 835, 1145
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 2 cut(s) 282, 291
BstMAI GTCTC 1 cut(s) 1402
BstMWI GCNNNNNNNGC 7 cut(s) 11, 277, 286, 288, 584, 1026, 1614
BstNI CCWGG 2 cut(s) 342, 401
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 340, 399
BstSFI CTRYAG 3 cut(s) 436, 565, 1378
BstSLI GKGCMC 1 cut(s) 521
BstV2I GAAGAC 3 cut(s) 25, 329, 1710
BstX2I RGATCY 3 cut(s) 189, 421, 1082
BstYI RGATCY 3 cut(s) 189, 421, 1082
BstZ17I GTATAC 2 cut(s) 892, 1417
BsuI GTATCC 2 cut(s) 203, 1477
BsuRI GGCC 4 cut(s) 345, 799, 1290, 1548
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 1661
BtsCI GGATG 4 cut(s) 541, 637, 835, 1145
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 3 cut(s) 156, 702, 1507
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 3 cut(s) 269, 436, 703
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 969
CfoI GCGC 2 cut(s) 282, 291
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 344, 797
CseI GACGC 1 cut(s) 1511
Csp6I GTAC 2 cut(s) 1189, 1347
CviAII CATG 4 cut(s) 306, 841, 970, 1004
CviQI GTAC 2 cut(s) 1189, 1347
DdeI CTNAG 2 cut(s) 63, 1479
DraI TTTAAA 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Ecl136II GAGCTC 1 cut(s) 1055
Eco24I GRGCYC 1 cut(s) 1057
Eco31I GGTCTC 1 cut(s) 1402
Eco32I GATATC 2 cut(s) 498, 669
Eco47III AGCGCT 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 1055
Eco72I CACGTG 1 cut(s) 604
Eco88I CYCGRG 2 cut(s) 1088, 1176
EcoICRI GAGCTC 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 340, 399
EcoRV GATATC 2 cut(s) 498, 669
EcoT38I GRGCYC 1 cut(s) 1057
FaeI CATG 4 cut(s) 309, 844, 973, 1007
FalI AAGNNNNNCTT 2 cut(s) 1697, 1729
FaqI GGGAC 1 cut(s) 540
FatI CATG 4 cut(s) 305, 840, 969, 1003
FbaI TGATCA 2 cut(s) 625, 661
FblI GTMKAC 2 cut(s) 891, 1416
FokI GGATG 4 cut(s) 528, 644, 842, 1152
FriOI GRGCYC 1 cut(s) 1057
FspBI CTAG 6 cut(s) 683, 689, 716, 1184, 1488, 1532
GlaI GCGC 2 cut(s) 281, 290
GsuI CTGGAG 1 cut(s) 1350
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 4 cut(s) 345, 799, 1290, 1548
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 1511
HhaI GCGC 2 cut(s) 282, 291
Hin1II CATG 4 cut(s) 309, 844, 973, 1007
Hin6I GCGC 2 cut(s) 280, 289
HinP1I GCGC 2 cut(s) 280, 289
HincII GTYRAC 2 cut(s) 163, 1009
HindII GTYRAC 2 cut(s) 163, 1009
HinfI GANTC 4 cut(s) 136, 532, 1685, 1748
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 6 cut(s) 74, 156, 163, 892, 1009, 1417
Hpy8I GTNNAC 6 cut(s) 74, 156, 163, 892, 1009, 1417
HpyAV CCTTC 8 cut(s) 121, 582, 608, 632, 862, 1452, 1645, 1667
HpyCH4III ACNGT 6 cut(s) 10, 160, 167, 179, 466, 1421
HpyCH4IV ACGT 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 277, 286, 288, 584, 1026, 1614
HpyF3I CTNAG 2 cut(s) 63, 1479
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 4 cut(s) 309, 844, 973, 1007
HspAI GCGC 2 cut(s) 280, 289
KroI GCCGGC 1 cut(s) 267
KroNI GCCGGC 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 625, 661
LmnI GCTCC 1 cut(s) 1369
LweI GCATC 3 cut(s) 1096, 1204, 1422
MaeI CTAG 6 cut(s) 683, 689, 716, 1184, 1488, 1532
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 1355, 1558
MflI RGATCY 3 cut(s) 189, 421, 1082
MhlI GDGCHC 2 cut(s) 521, 1057
MluCI AATT 8 cut(s) 590, 820, 1067, 1158, 1215, 1275, 1299, 1599
MlyI GAGTC 2 cut(s) 145, 1694
MmeI TCCRAC 3 cut(s) 217, 1429, 1650
MroNI GCCGGC 1 cut(s) 267
MslI CAYNNNNRTG 2 cut(s) 768, 1664
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 342, 401
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 2 cut(s) 342, 401
MwoI GCNNNNNNNGC 7 cut(s) 11, 277, 286, 288, 584, 1026, 1614
NaeI GCCGGC 1 cut(s) 269
NgoMIV GCCGGC 1 cut(s) 267
NlaIII CATG 4 cut(s) 309, 844, 973, 1007
NlaIV GGNNCC 2 cut(s) 218, 1084
NmuCI GTSAC 1 cut(s) 1558
NspI RCATGY 1 cut(s) 309
PaeR7I CTCGAG 2 cut(s) 1088, 1176
PagI TCATGA 1 cut(s) 969
PaqCI CACCTGC 1 cut(s) 647
PciI ACATGT 1 cut(s) 305
PctI GAATGC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 532, 1748
PleI GAGTC 2 cut(s) 144, 1693
PmaCI CACGTG 1 cut(s) 604
PmlI CACGTG 1 cut(s) 604
PpsI GAGTC 2 cut(s) 144, 1693
Ppu21I YACGTR 1 cut(s) 604
PscI ACATGT 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 1467
Psp124BI GAGCTC 1 cut(s) 1057
Psp6I CCWGG 2 cut(s) 340, 399
PspCI CACGTG 1 cut(s) 604
PspGI CCWGG 2 cut(s) 340, 399
PspN4I GGNNCC 2 cut(s) 218, 1084
PspPI GGNCC 2 cut(s) 344, 797
PspXI VCTCGAGB 1 cut(s) 1176
PsrI GAACNNNNNNTAC 2 cut(s) 1533, 1565
PstI CTGCAG 1 cut(s) 440
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 3 cut(s) 189, 421, 1082
RsaI GTAC 2 cut(s) 1190, 1348
RsaNI GTAC 2 cut(s) 1189, 1347
RseI CAYNNNNRTG 2 cut(s) 768, 1664
SacI GAGCTC 1 cut(s) 1057
Sau96I GGNCC 2 cut(s) 344, 797
SbfI CCTGCAGG 1 cut(s) 440
ScaI AGTACT 1 cut(s) 1190
SchI GAGTC 2 cut(s) 145, 1694
ScrFI CCNGG 2 cut(s) 342, 401
SdaI CCTGCAGG 1 cut(s) 440
SduI GDGCHC 2 cut(s) 521, 1057
SfaNI GCATC 3 cut(s) 1096, 1204, 1422
SfcI CTRYAG 3 cut(s) 436, 565, 1378
Sfr274I CTCGAG 2 cut(s) 1088, 1176
SlaI CTCGAG 2 cut(s) 1088, 1176
SmiMI CAYNNNNRTG 2 cut(s) 768, 1664
SmlI CTYRAG 2 cut(s) 1088, 1176
SmoI CTYRAG 2 cut(s) 1088, 1176
SpeI ACTAGT 1 cut(s) 1487
Sse8387I CCTGCAGG 1 cut(s) 440
Sse9I AATT 8 cut(s) 590, 820, 1067, 1158, 1215, 1275, 1299, 1599
SsiI CCGC 2 cut(s) 60, 147
SspMI CTAG 6 cut(s) 683, 689, 716, 1184, 1488, 1532
SstI GAGCTC 1 cut(s) 1057
StyD4I CCNGG 2 cut(s) 340, 399
TaaI ACNGT 6 cut(s) 10, 160, 167, 179, 466, 1421
TaiI ACGT 1 cut(s) 606
TaqI TCGA 2 cut(s) 1089, 1177
TasI AATT 8 cut(s) 590, 820, 1067, 1158, 1215, 1275, 1299, 1599
TatI WGTACW 1 cut(s) 1188
TfiI GAWTC 2 cut(s) 532, 1748
TscAI CASTG 3 cut(s) 163, 702, 1514
TseFI GTSAC 1 cut(s) 1558
Tsp45I GTSAC 1 cut(s) 1558
TspDTI ATGAA 5 cut(s) 958, 986, 1080, 1087, 1664
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 3 cut(s) 163, 702, 1514
VspI ATTAAT 1 cut(s) 1467
XapI RAATTY 6 cut(s) 590, 1067, 1158, 1215, 1275, 1299
XceI RCATGY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XhoI CTCGAG 2 cut(s) 1088, 1176
XmiI GTMKAC 2 cut(s) 891, 1416
XspI CTAG 6 cut(s) 683, 689, 716, 1184, 1488, 1532
ZrmI AGTACT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.