Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003784.1

Orthogroup ID

OG0005536

Physical Location & Seq

Genomic Coordinates Reverse (-)

53296 .. 56172

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003784.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgcgacggcgtagttatgcagtagcaaacaattggtattatggcgacggggatgttttgccgtcgtatccgattgttgttttagcgacgggctcgagctacgaaagcatgttgagtcaccaccaccggcaatccagcgcgcgtgagctcttaaacacggcaacgcaagtggtggcggcgctgatcacccacccgcacacgttagcatgctccggtagccaacgcctttcatcccaatctcactgctccttcgccaccatgaccggaaaggacgagtcgctcgaagctatattccggcggaagcactcgctccggtccagactccgcaaggagctcaagaacatggacccgacccggagatccgaagaagatgctgcgattcagagcattgtgttgactgctccttggtttaagtacagtaagggtatatgtgcttatataagctctcctgagctgcgagaagtagatacttcaaggattgtgtcagaaattctatcgaattcaggcaatggtcaagaaggtgatgtgctgatcaggagaaagctttacgttccgcgggttgaggataggaatagtaatatgcgcatgctgaggattaacagtgttggtgatctgattgtgaagtctatgaacgttttggaacctgcgctttcggatgccgaggggaaacaatatgaagatgttgcgctatcatattcaatacagatcgtggaggaaggagccatacctgtcacttcgaatgatgtttctgtggatgctcttgtatccccagctggttttgttccaataagcccagctgcttggaagagatgtgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

272

Amino Acids

30.16

Weight (kDa)

8.31

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410 FvH4_4g35410
malus_domestica	MD16G1082800.v1.1
prunus_persica	Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1 Prupe.1G263300_v2.0.a1
pyrus_communis	pycom16g07170 pycom16g23340
rosa_chinensis	RchiOBHm_Chr4g0445021
rosa_laevigata	RLG00000005776
rosa_multiflora	Rmu_sc0003784.1_g000012
rosa_roxburghii	Rroxscaffold_5G00385550
rosa_rugosa	Rorug04G0357700 Rorug04G0357800 Rorug04G0357800 Rorug04G0357900
rosa_samantha	Rh4AG419300 Rh4BG431000 Rh4CG445400 Rh4DG426900
rosa_wichuraiana	Rw4G035900 Rw4G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	652
AccII	CGCG	3 cut(s)	140, 142, 556
AciI	CCGC	6 cut(s)	176, 194, 298, 325, 554, 556
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	489, 499
AfaI	GTAC	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	474, 699
AluBI	AGCT	9 cut(s)	99, 148, 287, 334, 444, 454, 544, 773, 797
AluI	AGCT	9 cut(s)	99, 148, 287, 334, 444, 454, 544, 773, 797
Alw21I	GWGCWC	2 cut(s)	150, 336
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	374, 454, 797
ApoI	RAATTY	2 cut(s)	489, 499
AspLEI	GCGC	6 cut(s)	140, 142, 181, 585, 649, 688
AspS9I	GGNCC	2 cut(s)	315, 346
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	4 cut(s)	110, 178, 533, 620
AsuII	TTCGAA	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	315, 346
BanII	GRGCYC	3 cut(s)	95, 150, 336
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
Bbv12I	GWGCWC	2 cut(s)	150, 336
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	3 cut(s)	361, 441, 784
BceAI	ACGGC	3 cut(s)	23, 46, 174
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciVI	GTATCC	2 cut(s)	78, 775
BclI	TGATCA	2 cut(s)	183, 531
BcnI	CCSGG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	2 cut(s)	78, 775
BisI	GCNGC	4 cut(s)	177, 375, 455, 798
BlsI	GCNGC	4 cut(s)	178, 376, 456, 799
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	315, 346
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	315, 346
BmiI	GGNNCC	3 cut(s)	348, 642, 721
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	361, 646, 745
Bpu10I	CCTNAGC	2 cut(s)	450, 590
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	404, 554, 660
BsaWI	WCCGGW	3 cut(s)	212, 263, 312
Bse118I	RCCGGY	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	404, 554, 660
BseGI	GGATG	4 cut(s)	58, 230, 661, 760
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	441, 581
BsePI	GCGCGC	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	361, 441, 784
BseYI	CCCAGC	2 cut(s)	769, 793
Bsh1236I	CGCG	3 cut(s)	140, 142, 556
BsiHKAI	GWGCWC	2 cut(s)	150, 336
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	6 cut(s)	127, 213, 264, 295, 313, 355
BsoBI	CYCGRG	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	95, 150, 336
Bsp143I	GATC	5 cut(s)	183, 359, 531, 610, 705
BspACI	CCGC	6 cut(s)	176, 194, 298, 325, 554, 556
BspCNI	CTCAG	2 cut(s)	442, 582
BspFNI	CGCG	3 cut(s)	140, 142, 556
BspLI	GGNNCC	3 cut(s)	348, 642, 721
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	404, 554, 660
BssHII	GCGCGC	1 cut(s)	138
BssMI	GATC	5 cut(s)	183, 359, 531, 610, 705
BssT1I	CCWWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	419, 602
Bst6I	CTCTTC	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	140, 208, 587
BstDEI	CTNAG	2 cut(s)	450, 590
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	58, 230, 661, 760
BstFNI	CGCG	3 cut(s)	140, 142, 556
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	6 cut(s)	140, 142, 181, 585, 649, 688
BstKTI	GATC	5 cut(s)	186, 362, 534, 613, 708
BstMBI	GATC	5 cut(s)	183, 359, 531, 610, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 216
BstNSI	RCATGY	3 cut(s)	112, 210, 589
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	3 cut(s)	140, 142, 556
BstV1I	GCAGC	3 cut(s)	361, 441, 784
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	359
BsuI	GTATCC	2 cut(s)	78, 775
BtgI	CCRYGG	1 cut(s)	554
BtsCI	GGATG	4 cut(s)	58, 230, 661, 760
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	241, 607
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	140, 208, 587
CfoI	GCGC	6 cut(s)	140, 142, 181, 585, 649, 688
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	315, 346
Cfr42I	CCGCGG	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	5 cut(s)	109, 207, 259, 343, 586
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	450, 590
DpnI	GATC	5 cut(s)	185, 361, 533, 612, 707
DpnII	GATC	5 cut(s)	183, 359, 531, 610, 705
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
EciI	GGCGGA	1 cut(s)	313
Ecl136II	GAGCTC	2 cut(s)	148, 334
Eco130I	CCWWGG	1 cut(s)	404
Eco24I	GRGCYC	3 cut(s)	95, 150, 336
Eco47I	GGWCC	2 cut(s)	315, 346
Eco53kI	GAGCTC	2 cut(s)	148, 334
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	2 cut(s)	148, 334
EcoRI	GAATTC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	3 cut(s)	95, 150, 336
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	5 cut(s)	112, 210, 262, 346, 589
FatI	CATG	5 cut(s)	108, 206, 258, 342, 585
FauI	CCCGC	2 cut(s)	201, 549
FbaI	TGATCA	2 cut(s)	183, 531
Fnu4HI	GCNGC	4 cut(s)	177, 375, 455, 798
FokI	GGATG	4 cut(s)	65, 217, 668, 767
FriOI	GRGCYC	3 cut(s)	95, 150, 336
Fsp4HI	GCNGC	4 cut(s)	177, 375, 455, 798
FspAI	RTGCGCAY	1 cut(s)	584
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	6 cut(s)	139, 141, 180, 584, 648, 687
GluI	GCNGC	4 cut(s)	177, 375, 455, 798
GsaI	CCCAGC	2 cut(s)	773, 797
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	6 cut(s)	127, 213, 264, 295, 313, 355
HhaI	GCGC	6 cut(s)	140, 142, 181, 585, 649, 688
Hin1II	CATG	5 cut(s)	112, 210, 262, 346, 589
Hin6I	GCGC	6 cut(s)	138, 140, 179, 583, 647, 686
HinP1I	GCGC	6 cut(s)	138, 140, 179, 583, 647, 686
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	115, 275, 321, 379
HpaII	CCGG	6 cut(s)	127, 213, 264, 295, 313, 355
HphI	GGTGA	4 cut(s)	110, 178, 533, 620
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	6 cut(s)	72, 364, 384, 487, 615, 655
Hpy188III	TCNNGA	5 cut(s)	318, 337, 449, 515, 535
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	4 cut(s)	9, 50, 67, 91
HpyAV	CCTTC	3 cut(s)	259, 512, 710
HpyCH4III	ACNGT	2 cut(s)	419, 602
HpyCH4IV	ACGT	3 cut(s)	200, 549, 633
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 216
HpyF3I	CTNAG	2 cut(s)	450, 590
HpySE526I	ACGT	3 cut(s)	200, 549, 633
Hsp92II	CATG	5 cut(s)	112, 210, 262, 346, 589
HspAI	GCGC	6 cut(s)	138, 140, 179, 583, 647, 686
Ksp22I	TGATCA	2 cut(s)	183, 531
KspI	CCGCGG	1 cut(s)	557
Kzo9I	GATC	5 cut(s)	183, 359, 531, 610, 705
LmnI	GCTCC	6 cut(s)	215, 251, 315, 331, 406, 719
Lsp1109I	GCAGC	3 cut(s)	361, 441, 784
LweI	GCATC	3 cut(s)	361, 646, 745
MaeII	ACGT	3 cut(s)	200, 549, 633
MaeIII	GTNAC	2 cut(s)	116, 730
MalI	GATC	5 cut(s)	185, 361, 533, 612, 707
MboI	GATC	5 cut(s)	183, 359, 531, 610, 705
MboII	GAAGA	4 cut(s)	377, 380, 689, 817
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	3 cut(s)	95, 150, 336
MluCI	AATT	3 cut(s)	31, 489, 499
MlyI	GAGTC	3 cut(s)	124, 284, 315
MnlI	CCTC	4 cut(s)	556, 585, 655, 706
MseI	TTAA	3 cut(s)	152, 411, 597
MspA1I	CMGCKG	3 cut(s)	556, 773, 797
MspI	CCGG	6 cut(s)	127, 213, 264, 295, 313, 355
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	31
MvnI	CGCG	3 cut(s)	140, 142, 556
MwoI	GCNNNNNNNGC	2 cut(s)	105, 216
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	5 cut(s)	183, 359, 531, 610, 705
NlaIII	CATG	5 cut(s)	112, 210, 262, 346, 589
NlaIV	GGNNCC	3 cut(s)	348, 642, 721
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	116, 730
NsbI	TGCGCA	1 cut(s)	584
NspI	RCATGY	3 cut(s)	112, 210, 589
NspV	TTCGAA	1 cut(s)	737
PaeI	GCATGC	2 cut(s)	210, 589
PaeR7I	CTCGAG	1 cut(s)	94
PauI	GCGCGC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	178, 376, 456, 799
PleI	GAGTC	3 cut(s)	123, 283, 315
PpsI	GAGTC	3 cut(s)	123, 283, 315
Psp124BI	GAGCTC	2 cut(s)	150, 336
Psp1406I	AACGTT	1 cut(s)	633
PspFI	CCCAGC	2 cut(s)	769, 793
PspN4I	GGNNCC	3 cut(s)	348, 642, 721
PspPI	GGNCC	2 cut(s)	315, 346
PspXI	VCTCGAGB	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	359
PteI	GCGCGC	1 cut(s)	138
PvuII	CAGCTG	2 cut(s)	773, 797
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	150, 336
SacII	CCGCGG	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	152, 411, 597
SatI	GCNGC	4 cut(s)	177, 375, 455, 798
Sau3AI	GATC	5 cut(s)	183, 359, 531, 610, 705
Sau96I	GGNCC	2 cut(s)	315, 346
SchI	GAGTC	3 cut(s)	124, 284, 315
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	3 cut(s)	95, 150, 336
SfaNI	GCATC	3 cut(s)	361, 646, 745
Sfr274I	CTCGAG	1 cut(s)	94
Sfr303I	CCGCGG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	737
SgrBI	CCGCGG	1 cut(s)	557
SinI	GGWCC	2 cut(s)	315, 346
SlaI	CTCGAG	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	94, 335
SmoI	CTYRAG	2 cut(s)	94, 335
SphI	GCATGC	2 cut(s)	210, 589
Sse9I	AATT	3 cut(s)	31, 489, 499
SsiI	CCGC	6 cut(s)	176, 194, 298, 325, 554, 556
SstI	GAGCTC	2 cut(s)	150, 336
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	419, 602
TaiI	ACGT	3 cut(s)	203, 552, 636
TaqI	TCGA	4 cut(s)	95, 282, 497, 737
TasI	AATT	3 cut(s)	31, 489, 499
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	152, 411, 597
Tru9I	TTAA	3 cut(s)	152, 411, 597
TscAI	CASTG	2 cut(s)	248, 607
TseFI	GTSAC	2 cut(s)	116, 730
TseI	GCWGC	3 cut(s)	374, 454, 797
Tsp45I	GTSAC	2 cut(s)	116, 730
TspDTI	ATGAA	3 cut(s)	219, 644, 690
TspRI	CASTG	2 cut(s)	248, 607
VpaK11BI	GGWCC	2 cut(s)	315, 346
XapI	RAATTY	2 cut(s)	489, 499
XceI	RCATGY	3 cut(s)	112, 210, 589
XhoI	CTCGAG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.