Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Reverse (-)

7419646 .. 7422864

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1105800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGGCAGATACCGGCTCTCTACGTTTTCCGGGAAATCTGGACCCCGGAGCCCAGGAGTTCAGACCCAGTAACCCAAATCGGCACCCCAACCAAATACCCATTTTTGGGCCTCCTCCGCCGCTGCCACAACTCCTACCACTTTCTCCGTCTCCCCACCAGGTTTACTATCCCTACCCACCACCGCCAATCAGCGAAGTTGTCCCGTACGCGCCGTTCTCCGCACCGGCCACATACGTTAGCGCGGCGGCTACTGTATGCGCACCGTTGCCGCCTCCGACAGCGGCGGCGACGAGGGCAGTGCTTTTGAGCGGAGTGCCGAGTGACGTCAGCGAGGGGACTGTGAGGAGGGAGATGGAGGGGTTCGGGGAGGTGAGGTGGGTGCAGATGGACAGGGCGTGCGACGGGATCGTGACCGTCCACTTCTACGATCTCAGGCATGCAGAGAGGGCGTTGCGCGAGATTCGGCAGCAGCACATGCAGCTGGAAGACAGGATTCGCAACCACTACGCCGCCTTGTCGTTCGCGACGGCTACATCAGCTCCGCCACTTTCTATTTTCCCGCTTCCGTTTCCTCCTGGTCGCGGGCTCATCGCCGGGCAGGCCGTGTGGGCCCAGTGCGTCATTCCGGCCTTGAAAGCCGTCCCGGACGGCCACAACCAGGGCACAATCGTCATTTTCAATTTGGACCCGGCCGTCACCTCCTCTTTGAAAGATATATTCCAAGCTTTTGGTGCTGTAAAGGAATTGAGAGAGACGCCCTCGAAAAAGCACCAAAAGTTCATCGAGTTCTTCGACGTCAGAGACGCAGCGAGAGCTCTCGAGGAGATGAACGGCAAAGAAATCAACGGAAAATCAGTTGTCATTGAATTTAGTCGGCCTGGCGGTCACAGTAGGAAATACTTGAATGCGGCGGCTCACACTGCCCCCACTCTACTCTCGCCTCGCAATGCCATTGGACCACCGCAGCCGGCGGAATTGGCTGTAAAATTCTCTAGACGCTCCAACAGTTTTAGCTTGGCGACGCCGCCGCCTCGTTTGTGTACATCCTCATCACAAGTGCAGTTTTCGTCGAGTAGGAATAATAATAGATCAAATAATTCTAGCAGCAGCAAGGGAATAGTAATTAGCAGAAACAATGTTGAATCTAAAATGGCGGGTTTGAATTTGGATGGAATTCAAGAGAAGAGGTGTTCTTCTTCGAAGAAGATGAGTTGCGAGAACTCGGAGAGCCTGCAGGCCATTCTAACGAGGCCGAAGCAGCCGAGGAGCAGTAGGGGGAAGAAGGGAAGACAAGCGAAGAAGTTCGATTCAAAATTTTTAATAAAAGAAGAAGCTATATCCGAATCCACCAGCGGAGAAACCAGAACCACCGTCATGATCAAGAACATACCCAATAAGTACAGTCAGAAGCTGCTGTTGAACATGCTGGACAACCACTGTATTCACTTCAACGAGCAGATTATTAGCGACGGCGATCATGGTGGTGGTGATGATGAAAAGCAGCCCTTCTCCTCCTACGATTTCGTTTATCTTCCCATTGATTTCAATAACAAGTGCAATGTGGGATATGGATTCGTGAACATGACATCCCCGGAGGCAACATGGAGGCTGTACAAGGCATTTCACCATCAACATTGGGAAGTCTTCAATTCCAGGAAAATATGCGAAGTCACATACGCTCGAGTTCAGGGATTGGAGGCGTTGAAGGAGCATTTCAAGAACTCGAAGTTCCCGTGCGAGATGGAGCACTACCTGCCAGTGGTGTTTTCCCCGCCTCGGGACGGGAAGCAACTGACCGAACCACTTCCCATTGTTGGCGTTGGCGCCCAGAATAATAATAAAACGCACTCCTCCACCACCACTTCCTCCTCCTGCAGCTCCTCCATTTCTCATCTGCTCCCGCCACCTCACCATCACGATATTGATTACGACGCGCCTCTGTCCGCGTGTGATACGGACGAGGACAGCAACCGGAACGCCGGCATCATGGCGGACGATGATGACGAACGATGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

673

Amino Acids

74.21

Weight (kDa)

8.44

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	223 - 286	7.6e-10	RNA recognition motif
RRM_2	PF04059	455 - 480	9.8e-06	RNA recognition motif 2
RRM_2	PF04059	504 - 573	1.4e-25	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AatII	GACGTC	2 cut(s)	327, 798
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	1761
AccB1I	GGYRCC	2 cut(s)	81, 1823
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	3 cut(s)	225, 649, 690
AcsI	RAATTY	5 cut(s)	866, 986, 1162, 1173, 1313
AcyI	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
AfaI	GTAC	4 cut(s)	206, 1042, 1400, 1613
AfiI	CCNNNNNNNGG	9 cut(s)	104, 105, 581, 658, 1759, 1776, 1777, 1781, 1814
AjnI	CCWGG	6 cut(s)	51, 156, 574, 657, 877, 1652
AloI	GAACNNNNNNTCC	2 cut(s)	1571, 1603
AluBI	AGCT	8 cut(s)	481, 539, 725, 815, 1014, 1334, 1411, 1878
AluI	AGCT	8 cut(s)	481, 539, 725, 815, 1014, 1334, 1411, 1878
Alw21I	GWGCWC	2 cut(s)	817, 1749
Alw26I	GTCTC	3 cut(s)	153, 746, 795
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	1411
Ama87I	CYCGRG	3 cut(s)	818, 1680, 1776
ApaI	GGGCCC	1 cut(s)	613
ApoI	RAATTY	5 cut(s)	866, 986, 1162, 1173, 1313
Asp700I	GAANNNNTTC	2 cut(s)	1301, 1803
AspLEI	GCGC	6 cut(s)	211, 242, 260, 456, 1826, 1936
AspS9I	GGNCC	6 cut(s)	40, 107, 609, 610, 685, 956
AsuC2I	CCSGG	6 cut(s)	30, 45, 595, 644, 689, 1592
AsuHPI	GGTGA	5 cut(s)	382, 688, 1499, 1616, 1901
AsuII	TTCGAA	1 cut(s)	1199
AvaI	CYCGRG	3 cut(s)	818, 1680, 1776
AvaII	GGWCC	3 cut(s)	40, 685, 956
BaeGI	GKGCMC	2 cut(s)	613, 665
BanI	GGYRCC	2 cut(s)	81, 1823
BanII	GRGCYC	4 cut(s)	52, 588, 613, 817
BbsI	GAAGAC	3 cut(s)	492, 1294, 1636
Bbv12I	GWGCWC	2 cut(s)	817, 1749
BccI	CCATC	6 cut(s)	346, 379, 1163, 1635, 1735, 1920
BceAI	ACGGC	8 cut(s)	196, 543, 587, 623, 664, 677, 847, 1486
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	6 cut(s)	53, 158, 576, 659, 879, 1654
BclI	TGATCA	1 cut(s)	1377
BcnI	CCSGG	6 cut(s)	30, 45, 595, 644, 689, 1592
BcoDI	GTCTC	3 cut(s)	153, 746, 795
BfaI	CTAG	3 cut(s)	993, 1101, 2017
BfmI	CTRYAG	2 cut(s)	1232, 1873
BfoI	RGCGCY	1 cut(s)	1827
BfuAI	ACCTGC	1 cut(s)	1761
BglI	GCCNNNNNGGC	2 cut(s)	599, 608
Bme18I	GGWCC	3 cut(s)	40, 685, 956
BmeT110I	CYCGRG	3 cut(s)	818, 1680, 1776
BmgT120I	GGNCC	6 cut(s)	40, 107, 609, 610, 685, 956
BmiI	GGNNCC	6 cut(s)	42, 49, 83, 611, 687, 1825
BmrI	ACTGGG	2 cut(s)	60, 607
BmsI	GCATC	2 cut(s)	1992, 2000
BmuI	ACTGGG	2 cut(s)	60, 607
BpiI	GAAGAC	3 cut(s)	492, 1294, 1636
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
Bpu14I	TTCGAA	1 cut(s)	1199
BpuMI	CCSGG	6 cut(s)	30, 45, 595, 644, 689, 1592
BsaHI	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
BsaJI	CCNNGG	6 cut(s)	43, 51, 658, 1262, 1590, 1775
BsaWI	WCCGGW	1 cut(s)	1971
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 523, 553
Bsc4I	CCNNNNNNNGG	9 cut(s)	104, 105, 581, 658, 1759, 1776, 1777, 1781, 1814
Bse118I	RCCGGY	4 cut(s)	11, 223, 967, 1979
Bse1I	ACTGG	3 cut(s)	66, 613, 1757
Bse3DI	GCAATG	2 cut(s)	952, 1564
BseBI	CCWGG	6 cut(s)	53, 158, 576, 659, 879, 1654
BseDI	CCNNGG	6 cut(s)	43, 51, 658, 1262, 1590, 1775
BseGI	GGATG	3 cut(s)	1043, 1174, 1586
BseLI	CCNNNNNNNGG	9 cut(s)	104, 105, 581, 658, 1759, 1776, 1777, 1781, 1814
BseMI	GCAATG	2 cut(s)	952, 1564
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	3 cut(s)	66, 613, 1757
BseRI	GAGGAG	9 cut(s)	102, 358, 691, 836, 1279, 1501, 1840, 1858, 1870
BseSI	GKGCMC	2 cut(s)	613, 665
BseX3I	CGGCCG	1 cut(s)	690
BsgI	GTGCAG	2 cut(s)	401, 1079
Bsh1236I	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
Bsh1285I	CGRYCG	1 cut(s)	693
BshNI	GGYRCC	2 cut(s)	81, 1823
BsiEI	CGRYCG	1 cut(s)	693
BsiHKAI	GWGCWC	2 cut(s)	817, 1749
BsiHKCI	CYCGRG	3 cut(s)	818, 1680, 1776
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	4 cut(s)	185, 349, 626, 1793
BslI	CCNNNNNNNGG	9 cut(s)	104, 105, 581, 658, 1759, 1776, 1777, 1781, 1814
BsmAI	GTCTC	3 cut(s)	153, 746, 795
BsmBI	CGTCTC	3 cut(s)	153, 746, 795
BsmFI	GGGAC	4 cut(s)	185, 349, 626, 1793
BsmI	GAATGC	1 cut(s)	910
BsoBI	CYCGRG	3 cut(s)	818, 1680, 1776
Bsp119I	TTCGAA	1 cut(s)	1199
Bsp120I	GGGCCC	1 cut(s)	609
Bsp1286I	GDGCHC	6 cut(s)	52, 588, 613, 665, 817, 1749
Bsp1407I	TGTACA	2 cut(s)	1040, 1611
Bsp143I	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
Bsp68I	TCGCGA	1 cut(s)	524
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
BspHI	TCATGA	1 cut(s)	1374
BspLI	GGNNCC	6 cut(s)	42, 49, 83, 611, 687, 1825
BspMAI	CTGCAG	2 cut(s)	1236, 1877
BspMI	ACCTGC	1 cut(s)	1761
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	1199
BspT107I	GGYRCC	2 cut(s)	81, 1823
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	2 cut(s)	952, 1564
BsrFI	RCCGGY	4 cut(s)	11, 223, 967, 1979
BsrGI	TGTACA	2 cut(s)	1040, 1611
BsrI	ACTGG	3 cut(s)	66, 613, 1757
BssAI	RCCGGY	4 cut(s)	11, 223, 967, 1979
BssECI	CCNNGG	6 cut(s)	43, 51, 658, 1262, 1590, 1775
BssMI	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
BssNI	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
Bst2UI	CCWGG	6 cut(s)	53, 158, 576, 659, 879, 1654
Bst4CI	ACNGT	9 cut(s)	253, 264, 340, 415, 890, 1007, 1372, 1403, 1439
Bst6I	CTCTTC	1 cut(s)	1178
BstACI	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
BstAPI	GCANNNNNTGC	2 cut(s)	475, 1753
BstAUI	TGTACA	2 cut(s)	1040, 1611
BstBI	TTCGAA	1 cut(s)	1199
BstC8I	GCNNGC	8 cut(s)	397, 438, 584, 600, 969, 1232, 1236, 1981
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	1043, 1174, 1586
BstFNI	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
BstH2I	RGCGCY	1 cut(s)	1827
BstHHI	GCGC	6 cut(s)	211, 242, 260, 456, 1826, 1936
BstKTI	GATC	5 cut(s)	408, 430, 1091, 1380, 1477
BstMAI	GTCTC	3 cut(s)	153, 746, 795
BstMBI	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
BstMCI	CGRYCG	1 cut(s)	693
BstNI	CCWGG	6 cut(s)	53, 158, 576, 659, 879, 1654
BstNSI	RCATGY	3 cut(s)	440, 478, 1426
BstSFI	CTRYAG	2 cut(s)	1232, 1873
BstSLI	GKGCMC	2 cut(s)	613, 665
BstUI	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
BstV2I	GAAGAC	3 cut(s)	492, 1294, 1636
BstXI	CCANNNNNNTGG	1 cut(s)	728
BstZI	CGGCCG	1 cut(s)	690
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	1043, 1174, 1586
BtsI	GCAGTG	2 cut(s)	303, 918
BtsIMutI	CAGTG	5 cut(s)	303, 620, 918, 1435, 1764
BtuMI	TCGCGA	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	1761
Cac8I	GCNNGC	8 cut(s)	397, 438, 584, 600, 969, 1232, 1236, 1981
CaiI	CAGNNNCTG	1 cut(s)	1411
CciI	TCATGA	1 cut(s)	1374
CfoI	GCGC	6 cut(s)	211, 242, 260, 456, 1826, 1936
Cfr10I	RCCGGY	4 cut(s)	11, 223, 967, 1979
Cfr13I	GGNCC	6 cut(s)	40, 107, 609, 610, 685, 956
CseI	GACGC	6 cut(s)	607, 763, 812, 1005, 1030, 1940
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	4 cut(s)	205, 1041, 1399, 1612
CviAII	CATG	8 cut(s)	437, 475, 1375, 1423, 1478, 1582, 1602, 1987
CviQI	GTAC	4 cut(s)	205, 1041, 1399, 1612
DdeI	CTNAG	1 cut(s)	431
DinI	GGCGCC	1 cut(s)	1825
DpnI	GATC	5 cut(s)	407, 429, 1090, 1379, 1476
DpnII	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	3 cut(s)	225, 649, 690
EagI	CGGCCG	1 cut(s)	690
Eam1104I	CTCTTC	1 cut(s)	1178
EarI	CTCTTC	1 cut(s)	1178
EciI	GGCGGA	4 cut(s)	105, 531, 986, 2006
Ecl136II	GAGCTC	1 cut(s)	815
EclXI	CGGCCG	1 cut(s)	690
Eco24I	GRGCYC	4 cut(s)	52, 588, 613, 817
Eco47I	GGWCC	3 cut(s)	40, 685, 956
Eco52I	CGGCCG	1 cut(s)	690
Eco53kI	GAGCTC	1 cut(s)	815
Eco88I	CYCGRG	3 cut(s)	818, 1680, 1776
EcoICRI	GAGCTC	1 cut(s)	815
EcoRI	GAATTC	1 cut(s)	1173
EcoRII	CCWGG	6 cut(s)	51, 156, 574, 657, 877, 1652
EcoT38I	GRGCYC	4 cut(s)	52, 588, 613, 817
EgeI	GGCGCC	1 cut(s)	1825
EheI	GGCGCC	1 cut(s)	1825
Esp3I	CGTCTC	3 cut(s)	153, 746, 795
FaeI	CATG	8 cut(s)	440, 478, 1378, 1426, 1481, 1585, 1605, 1990
FalI	AAGNNNNNCTT	2 cut(s)	1490, 1522
FaqI	GGGAC	4 cut(s)	185, 349, 626, 1793
FatI	CATG	8 cut(s)	436, 474, 1374, 1422, 1477, 1581, 1601, 1986
FauI	CCCGC	5 cut(s)	567, 575, 1147, 1779, 1908
FbaI	TGATCA	1 cut(s)	1377
FokI	GGATG	3 cut(s)	1030, 1181, 1573
FriOI	GRGCYC	4 cut(s)	52, 588, 613, 817
FspAI	RTGCGCAY	1 cut(s)	259
FspBI	CTAG	3 cut(s)	993, 1101, 2017
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	6 cut(s)	210, 241, 259, 455, 1825, 1935
HaeII	RGCGCY	1 cut(s)	1827
HgaI	GACGC	6 cut(s)	607, 763, 812, 1005, 1030, 1940
HhaI	GCGC	6 cut(s)	211, 242, 260, 456, 1826, 1936
Hin1I	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
Hin1II	CATG	8 cut(s)	440, 478, 1378, 1426, 1481, 1585, 1605, 1990
Hin6I	GCGC	6 cut(s)	209, 240, 258, 454, 1824, 1934
HinP1I	GCGC	6 cut(s)	209, 240, 258, 454, 1824, 1934
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	6 cut(s)	460, 493, 1142, 1307, 1343, 1572
HphI	GGTGA	5 cut(s)	382, 688, 1499, 1616, 1901
Hpy166II	GTNNAC	4 cut(s)	163, 418, 1041, 1579
Hpy188I	TCNGA	6 cut(s)	62, 276, 800, 1225, 1342, 1407
Hpy8I	GTNNAC	4 cut(s)	163, 418, 1041, 1579
Hpy99I	CGWCG	8 cut(s)	292, 404, 529, 797, 1024, 1072, 1472, 1934
HpyAV	CCTTC	3 cut(s)	1276, 1516, 1699
HpyCH4III	ACNGT	9 cut(s)	253, 264, 340, 415, 890, 1007, 1372, 1403, 1439
HpyCH4IV	ACGT	4 cut(s)	22, 234, 324, 795
HpyCH4V	TGCA	7 cut(s)	382, 440, 478, 1060, 1234, 1557, 1875
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	4 cut(s)	22, 234, 324, 795
Hsp92I	GRCGYC	5 cut(s)	324, 755, 795, 1022, 1824
Hsp92II	CATG	8 cut(s)	440, 478, 1378, 1426, 1481, 1585, 1605, 1990
HspAI	GCGC	6 cut(s)	209, 240, 258, 454, 1824, 1934
KasI	GGCGCC	1 cut(s)	1823
KroI	GCCGGC	2 cut(s)	967, 1979
KroNI	GCCGGC	2 cut(s)	969, 1981
Ksp22I	TGATCA	1 cut(s)	1377
Kzo9I	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
LmnI	GCTCC	8 cut(s)	47, 544, 1004, 1266, 1708, 1744, 1883, 1902
LweI	GCATC	2 cut(s)	1992, 2000
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	3 cut(s)	993, 1101, 2017
MaeII	ACGT	4 cut(s)	22, 234, 324, 795
MaeIII	GTNAC	6 cut(s)	68, 320, 409, 694, 884, 1669
MalI	GATC	5 cut(s)	407, 429, 1090, 1379, 1476
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
MhlI	GDGCHC	6 cut(s)	52, 588, 613, 665, 817, 1749
Mly113I	GGCGCC	1 cut(s)	1824
MmeI	TCCRAC	2 cut(s)	299, 1026
MroNI	GCCGGC	2 cut(s)	967, 1979
MroXI	GAANNNNTTC	2 cut(s)	1301, 1803
MseI	TTAA	1 cut(s)	1319
MslI	CAYNNNNRTG	2 cut(s)	1373, 1482
MspA1I	CMGCKG	4 cut(s)	121, 281, 481, 1353
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	6 cut(s)	53, 158, 576, 659, 879, 1654
MvnI	CGCG	7 cut(s)	209, 242, 456, 524, 582, 1934, 1946
NaeI	GCCGGC	2 cut(s)	969, 1981
NarI	GGCGCC	1 cut(s)	1824
NciI	CCSGG	6 cut(s)	30, 45, 595, 644, 689, 1592
NdeII	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
NgoMIV	GCCGGC	2 cut(s)	967, 1979
NlaIII	CATG	8 cut(s)	440, 478, 1378, 1426, 1481, 1585, 1605, 1990
NlaIV	GGNNCC	6 cut(s)	42, 49, 83, 611, 687, 1825
NmeAIII	GCCGAG	2 cut(s)	342, 1287
NmuCI	GTSAC	5 cut(s)	320, 409, 694, 884, 1669
NruI	TCGCGA	1 cut(s)	524
NsbI	TGCGCA	1 cut(s)	259
NspI	RCATGY	3 cut(s)	440, 478, 1426
NspV	TTCGAA	1 cut(s)	1199
PaeI	GCATGC	1 cut(s)	440
PaeR7I	CTCGAG	2 cut(s)	818, 1680
PagI	TCATGA	1 cut(s)	1374
PcsI	WCGNNNNNNNCGW	3 cut(s)	789, 1730, 2001
PctI	GAATGC	1 cut(s)	910
PdiI	GCCGGC	2 cut(s)	969, 1981
PdmI	GAANNNNTTC	2 cut(s)	1301, 1803
PfeI	GAWTC	6 cut(s)	460, 493, 1142, 1307, 1343, 1572
Pfl23II	CGTACG	1 cut(s)	204
PfoI	TCCNGGA	3 cut(s)	28, 642, 1652
PluTI	GGCGCC	1 cut(s)	1827
Psp124BI	GAGCTC	1 cut(s)	817
Psp6I	CCWGG	6 cut(s)	51, 156, 574, 657, 877, 1652
PspGI	CCWGG	6 cut(s)	51, 156, 574, 657, 877, 1652
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	6 cut(s)	42, 49, 83, 611, 687, 1825
PspOMI	GGGCCC	1 cut(s)	609
PspPI	GGNCC	6 cut(s)	40, 107, 609, 610, 685, 956
PspXI	VCTCGAGB	1 cut(s)	1680
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
PstI	CTGCAG	2 cut(s)	1236, 1877
PstNI	CAGNNNCTG	1 cut(s)	1411
PvuII	CAGCTG	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	524
RsaI	GTAC	4 cut(s)	206, 1042, 1400, 1613
RsaNI	GTAC	4 cut(s)	205, 1041, 1399, 1612
RseI	CAYNNNNRTG	2 cut(s)	1373, 1482
SacI	GAGCTC	1 cut(s)	817
SaqAI	TTAA	1 cut(s)	1319
Sau3AI	GATC	5 cut(s)	405, 427, 1088, 1377, 1474
Sau96I	GGNCC	6 cut(s)	40, 107, 609, 610, 685, 956
SbfI	CCTGCAGG	1 cut(s)	1236
SdaI	CCTGCAGG	1 cut(s)	1236
SduI	GDGCHC	6 cut(s)	52, 588, 613, 665, 817, 1749
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	1992, 2000
SfcI	CTRYAG	2 cut(s)	1232, 1873
SfiI	GGCCNNNNNGGCC	1 cut(s)	608
SfoI	GGCGCC	1 cut(s)	1825
Sfr274I	CTCGAG	2 cut(s)	818, 1680
SfuI	TTCGAA	1 cut(s)	1199
SinI	GGWCC	3 cut(s)	40, 685, 956
SlaI	CTCGAG	2 cut(s)	818, 1680
SmiMI	CAYNNNNRTG	2 cut(s)	1373, 1482
SmlI	CTYRAG	2 cut(s)	818, 1680
SmoI	CTYRAG	2 cut(s)	818, 1680
SphI	GCATGC	1 cut(s)	440
Sse8387I	CCTGCAGG	1 cut(s)	1236
SspDI	GGCGCC	1 cut(s)	1823
SspMI	CTAG	3 cut(s)	993, 1101, 2017
SstI	GAGCTC	1 cut(s)	817
TaaI	ACNGT	9 cut(s)	253, 264, 340, 415, 890, 1007, 1372, 1403, 1439
TaiI	ACGT	4 cut(s)	25, 237, 327, 798
TaqI	TCGA	9 cut(s)	761, 783, 792, 819, 1070, 1199, 1305, 1681, 1724
TaqII	GACCGA	1 cut(s)	1811
TatI	WGTACW	3 cut(s)	1040, 1398, 1611
TfiI	GAWTC	6 cut(s)	460, 493, 1142, 1307, 1343, 1572
Tru1I	TTAA	1 cut(s)	1319
Tru9I	TTAA	1 cut(s)	1319
TscAI	CASTG	5 cut(s)	303, 620, 925, 1442, 1764
TseFI	GTSAC	5 cut(s)	320, 409, 694, 884, 1669
Tsp45I	GTSAC	5 cut(s)	320, 409, 694, 884, 1669
TspDTI	ATGAA	3 cut(s)	769, 842, 1509
TspGWI	ACGGA	4 cut(s)	135, 555, 861, 1970
TspRI	CASTG	5 cut(s)	303, 620, 925, 1442, 1764
VpaK11BI	GGWCC	3 cut(s)	40, 685, 956
XapI	RAATTY	5 cut(s)	866, 986, 1162, 1173, 1313
XbaI	TCTAGA	1 cut(s)	992
XceI	RCATGY	3 cut(s)	440, 478, 1426
XhoI	CTCGAG	2 cut(s)	818, 1680
XmnI	GAANNNNTTC	2 cut(s)	1301, 1803
XspI	CTAG	3 cut(s)	993, 1101, 2017
ZraI	GACGTC	2 cut(s)	325, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.