Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Forward (+)

54997464 .. 55000491

Gene Structure 3028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGGCTGAAACCGGTTTCGTCCGGTTTCCGGGTGGCCTGGACCCGGGAGCCGAGGAGTTCAGGCCCAGAAACCCGAACCCGATACCCCTTTTCAGCCCACCACCGCCTCTGCCACACCAAGTTTACTATCCCTACCCACCGCCACCGCCCATGAACGAAGTGGTGGCGGTGCCCTACGTGCCGTCACCTGCGGCGTACGTTAGCGCGGTGACGGTGCAGGCCCCGATCCCGCCTCCTGCCGCGGGGCCGACTCGGGCGGTGCTGCTGAGGCCGGTGCCGTGTGACGTCAGCGAGGTGACGATTCGGCGGGAGTTGGAGGCGTTCGGGCAGGTGAGGTGGGTTCAGATGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTCTACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGATTCGGGACCAGCACATGCAACACCAACAACAACAACAACAACAACAACCCACCCGCCCTCCTCGTAATCCCGGTCCGTACCACCGGAGCTCCTCCGCCGTGATTGTCAGCCCCGACGTGTGGGCCCACTTCGTGATTCCGGTGCACACGGCAATCCCCGACGGCCACAACCAAGGCACCATCGTGATTTTCAATCTAGACTCGGCGGTGACCACCTCCAGCGTCAGGCAGACGTTCCAAGCTTTTGGTGCTGTGAAGGAATTGAGGGAGACACCCTCGAAGAAGCACCAGAAATTCGTGGAGTTTTTCGATGTCAGACATGCTGCTAGAGCTCTCAAGGAGATGAACGGCAAGGAGATCCATGGCAAACAGATTGTGATCGAGTTCAGTCGCCCCGGAGGCAACAGCTGGAAGAAACTGAATTCTCTCACCACCACTGCCGTCCCAACTGTCGTCTCTGCCAACGTCGCTTCGCCTGAGTTATATCTGCCCGAACCGTTCTCCGGGCACTCTCGTTTCAATGCAGTCTCCCCGCTAATGTATGCTTCACAAGGCCAGTTTTCGACTAGGACTAATTCGGGAAGTAGTGGAAATGTTGGTGTGGAGTCTCTAGTGGCGGAGTTGAATTTGCGCGGTGGAATTGAAGAGAGGGAGTCAGTGGGGCATTCGAGAAGGGCTTCGTCGAAGAAGCAAAGCAGCCAGGCAATGGTAACAAGTCCAAGGCAGCTGCAGCAACCTCCGCCTCCGCCACCCAGAAGTAGTAGGGGAAAGAGAGGAAAGCAGCCCAAGAAGTATGATACGCGGTTTCTAATCAGAGAAGATGTCATGATCGAATCCACAAGCGATTCAAGAACCACTCTGATGATAAAAAACATACCGAACAAATACAGTCAGAAGCTGCTATTGAGTATGCTGGACAACCATTGCATTCACTGCAACGAACAGATTCTTCGCGACGGCGATGAAGACCAGCCTTTGTCCTCCTACGATTTCGTTTATCTCCCCATTGATTTCAATAACAAATGCAATGTAGGTTATGGGTTTGTGAACATGACAAGCCCAGAGGCTACATGGAGGCTTTACAAAGCCTTTCATCACCAAAATTGGGAGGTCTTCAACTCCAGAAAAATCTGTGAAGTCACTTACGCAAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTTCAAGAACTCGAAGTTCCCGAGCGAAATGGATCACTACTTGCCGGTTGTGTTTACGCCGCCCCGGGACGGCAAGCTTCTGACGGATCCACTCCCCATCTTCGGCATCCAACACAAGTCTGGCAGCAACTCCTCCGCCGCCGTTAATCACCCCATTACTCTCCTCCTGCCTCCATCACATCAACATAACCATGATGACATGGATGACTCTGACCACTGTAGTAGCCGTGACGGCGGCGTCCTGGGTATTAATGACGACCAGGACGACGACGACCAAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

628

Amino Acids

70.16

Weight (kDa)

6.96

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	201 - 265	8.3e-11	RNA recognition motif
RRM_2	PF04059	424 - 536	5e-33	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	196, 319
AasI	GACNNNNNNGTC	1 cut(s)	1838
AatII	GACGTC	1 cut(s)	288
Acc36I	ACCTGC	2 cut(s)	196, 319
AccB1I	GGYRCC	3 cut(s)	169, 274, 596
AccB7I	CCANNNNNTGG	1 cut(s)	1126
AccII	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
AclWI	GGATC	6 cut(s)	220, 374, 772, 1641, 1682, 1695
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	3 cut(s)	713, 841, 1045
AcyI	GRCGYC	2 cut(s)	285, 1839
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	197, 500
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	9 cut(s)	613, 940, 1045, 1064, 1269, 1435, 1537, 1594, 1606
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	4 cut(s)	36, 1119, 1842, 1860
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	8 cut(s)	510, 662, 752, 828, 1147, 1318, 1678, 1884
AluI	AGCT	8 cut(s)	510, 662, 752, 828, 1147, 1318, 1678, 1884
Alw21I	GWGCWC	4 cut(s)	512, 567, 754, 1602
Alw26I	GTCTC	4 cut(s)	683, 880, 952, 1032
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	6 cut(s)	220, 374, 772, 1641, 1682, 1695
AlwNI	CAGNNNCTG	1 cut(s)	1318
Ama87I	CYCGRG	4 cut(s)	43, 252, 1621, 1665
AoxI	GGCC	9 cut(s)	34, 62, 219, 245, 269, 408, 543, 583, 973
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	9 cut(s)	262, 743, 1116, 1144, 1147, 1150, 1201, 1318, 1725
ApoI	RAATTY	3 cut(s)	713, 841, 1045
AseI	ATTAAT	1 cut(s)	1851
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	1096, 1365
AspLEI	GCGC	2 cut(s)	206, 1053
AspS9I	GGNCC	9 cut(s)	40, 63, 220, 245, 354, 427, 494, 543, 544
AsuC2I	CCSGG	8 cut(s)	30, 44, 45, 492, 816, 925, 1666, 1667
AsuHPI	GGTGA	8 cut(s)	177, 220, 307, 343, 640, 841, 1508, 1742
AvaI	CYCGRG	4 cut(s)	43, 252, 1621, 1665
AvaII	GGWCC	4 cut(s)	40, 354, 427, 494
BaeGI	GKGCMC	4 cut(s)	174, 547, 567, 930
BamHI	GGATCC	1 cut(s)	1687
BanI	GGYRCC	3 cut(s)	169, 274, 596
BanII	GRGCYC	3 cut(s)	512, 547, 754
BbsI	GAAGAC	2 cut(s)	1392, 1525
Bbv12I	GWGCWC	4 cut(s)	512, 567, 754, 1602
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	9 cut(s)	249, 730, 1128, 1134, 1156, 1162, 1213, 1305, 1737
BccI	CCATC	4 cut(s)	340, 608, 1706, 1783
BciT130I	CCWGG	4 cut(s)	38, 1121, 1844, 1862
BcnI	CCSGG	8 cut(s)	30, 44, 45, 492, 816, 925, 1666, 1667
BcoDI	GTCTC	4 cut(s)	683, 880, 952, 1032
BfaI	CTAG	5 cut(s)	617, 747, 987, 1031, 1885
BfmI	CTRYAG	2 cut(s)	1148, 1819
BfuAI	ACCTGC	2 cut(s)	196, 319
BglI	GCCNNNNNGGC	2 cut(s)	819, 1833
Bme18I	GGWCC	4 cut(s)	40, 354, 427, 494
BmeT110I	CYCGRG	4 cut(s)	43, 252, 1621, 1665
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	9 cut(s)	40, 63, 220, 245, 354, 427, 494, 543, 544
BmsI	GCATC	1 cut(s)	1716
BpiI	GAAGAC	2 cut(s)	1392, 1525
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BpmI	CTGGAG	2 cut(s)	622, 1525
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	8 cut(s)	30, 44, 45, 492, 816, 925, 1666, 1667
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	2 cut(s)	285, 1839
BsaWI	WCCGGW	4 cut(s)	11, 21, 504, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 494, 524
Bse118I	RCCGGY	3 cut(s)	11, 271, 1645
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	3 cut(s)	1131, 1342, 1453
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	4 cut(s)	38, 1121, 1844, 1862
BseGI	GGATG	2 cut(s)	1707, 1810
BseJI	GATNNNNATC	1 cut(s)	797
BseMI	GCAATG	3 cut(s)	1131, 1342, 1453
BseMII	CTCAG	3 cut(s)	257, 406, 888
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	5 cut(s)	68, 471, 502, 1723, 1754
BseSI	GKGCMC	4 cut(s)	174, 547, 567, 930
BseXI	GCAGC	9 cut(s)	249, 730, 1128, 1134, 1156, 1162, 1213, 1305, 1737
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
BshFI	GGCC	9 cut(s)	36, 64, 221, 247, 271, 410, 545, 585, 975
BshNI	GGYRCC	3 cut(s)	169, 274, 596
BshTI	ACCGGT	1 cut(s)	11
BsiHKAI	GWGCWC	4 cut(s)	512, 567, 754, 1602
BsiHKCI	CYCGRG	4 cut(s)	43, 252, 1621, 1665
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	3 cut(s)	440, 848, 1682
BsmAI	GTCTC	4 cut(s)	683, 880, 952, 1032
BsmBI	CGTCTC	1 cut(s)	880
BsmFI	GGGAC	3 cut(s)	440, 848, 1682
BsmI	GAATGC	2 cut(s)	1084, 1347
BsnI	GGCC	9 cut(s)	36, 64, 221, 247, 271, 410, 545, 585, 975
BsoBI	CYCGRG	4 cut(s)	43, 252, 1621, 1665
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	7 cut(s)	174, 512, 547, 567, 754, 930, 1602
Bsp143I	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
Bsp19I	CCATGG	1 cut(s)	781
Bsp68I	TCGCGA	1 cut(s)	1374
BspANI	GGCC	9 cut(s)	36, 64, 221, 247, 271, 410, 545, 585, 975
BspCNI	CTCAG	3 cut(s)	258, 405, 889
BspFNI	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
BspHI	TCATGA	1 cut(s)	1245
BspMAI	CTGCAG	1 cut(s)	1152
BspMI	ACCTGC	2 cut(s)	196, 319
BspPI	GGATC	6 cut(s)	220, 374, 772, 1641, 1682, 1695
BspT107I	GGYRCC	3 cut(s)	169, 274, 596
BsrDI	GCAATG	3 cut(s)	1131, 1342, 1453
BsrFI	RCCGGY	3 cut(s)	11, 271, 1645
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	3 cut(s)	11, 271, 1645
BssMI	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
BssNI	GRCGYC	2 cut(s)	285, 1839
BssT1I	CCWWGG	4 cut(s)	411, 592, 781, 1139
Bst2UI	CCWGG	4 cut(s)	38, 1121, 1844, 1862
Bst4CI	ACNGT	6 cut(s)	214, 376, 871, 918, 1310, 1820
Bst6I	CTCTTC	1 cut(s)	1059
BstACI	GRCGYC	2 cut(s)	285, 1839
BstAPI	GCANNNNNTGC	1 cut(s)	1353
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	219, 399, 1676
BstDEI	CTNAG	3 cut(s)	266, 392, 897
BstDSI	CCRYGG	2 cut(s)	240, 781
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	1707, 1810
BstFNI	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
BstHHI	GCGC	2 cut(s)	206, 1053
BstKTI	GATC	8 cut(s)	228, 369, 391, 780, 801, 1251, 1636, 1690
BstMAI	GTCTC	4 cut(s)	683, 880, 952, 1032
BstMBI	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
BstNI	CCWGG	4 cut(s)	38, 1121, 1844, 1862
BstNSI	RCATGY	3 cut(s)	401, 439, 743
BstPI	GGTNACC	1 cut(s)	628
BstSFI	CTRYAG	2 cut(s)	1148, 1819
BstSLI	GKGCMC	4 cut(s)	174, 547, 567, 930
BstUI	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
BstV1I	GCAGC	9 cut(s)	249, 730, 1128, 1134, 1156, 1162, 1213, 1305, 1737
BstV2I	GAAGAC	2 cut(s)	1392, 1525
BstX2I	RGATCY	2 cut(s)	777, 1687
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	2 cut(s)	777, 1687
BsuRI	GGCC	9 cut(s)	36, 64, 221, 247, 271, 410, 545, 585, 975
BtgI	CCRYGG	2 cut(s)	240, 781
BtgZI	GCGATG	1 cut(s)	1395
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	1707, 1810
BtsI	GCAGTG	2 cut(s)	855, 1351
BtsIMutI	CAGTG	4 cut(s)	855, 1083, 1351, 1816
BtuMI	TCGCGA	1 cut(s)	1374
BveI	ACCTGC	2 cut(s)	196, 319
Cac8I	GCNNGC	3 cut(s)	219, 399, 1676
CaiI	CAGNNNCTG	1 cut(s)	1318
CciI	TCATGA	1 cut(s)	1245
CfoI	GCGC	2 cut(s)	206, 1053
Cfr10I	RCCGGY	3 cut(s)	11, 271, 1645
Cfr13I	GGNCC	9 cut(s)	40, 63, 220, 245, 354, 427, 494, 543, 544
Cfr42I	CCGCGG	1 cut(s)	243
Cfr9I	CCCGGG	2 cut(s)	43, 1665
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	2 cut(s)	631, 1828
Csp6I	GTAC	2 cut(s)	196, 499
CspAI	ACCGGT	1 cut(s)	11
CspI	CGGWCCG	1 cut(s)	494
CviQI	GTAC	2 cut(s)	196, 499
DdeI	CTNAG	3 cut(s)	266, 392, 897
DpnI	GATC	8 cut(s)	227, 368, 390, 779, 800, 1250, 1635, 1689
DpnII	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
DraIII	CACNNNGTG	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	1838
DseDI	GACNNNNNNGTC	1 cut(s)	1838
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	6 cut(s)	431, 505, 1052, 1149, 1155, 1726
Ecl136II	GAGCTC	2 cut(s)	510, 752
Eco130I	CCWWGG	4 cut(s)	411, 592, 781, 1139
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	3 cut(s)	512, 547, 754
Eco47I	GGWCC	4 cut(s)	40, 354, 427, 494
Eco53kI	GAGCTC	2 cut(s)	510, 752
Eco88I	CYCGRG	4 cut(s)	43, 252, 1621, 1665
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	2 cut(s)	510, 752
EcoO109I	RGGNCCY	2 cut(s)	220, 354
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	4 cut(s)	36, 1119, 1842, 1860
EcoT14I	CCWWGG	4 cut(s)	411, 592, 781, 1139
EcoT38I	GRGCYC	3 cut(s)	512, 547, 754
ErhI	CCWWGG	4 cut(s)	411, 592, 781, 1139
Esp3I	CGTCTC	1 cut(s)	880
FalI	AAGNNNNNCTT	2 cut(s)	1586, 1618
FaqI	GGGAC	3 cut(s)	440, 848, 1682
FauI	CCCGC	5 cut(s)	235, 237, 300, 482, 960
FokI	GGATG	2 cut(s)	1694, 1817
FriOI	GRGCYC	3 cut(s)	512, 547, 754
FspBI	CTAG	5 cut(s)	617, 747, 987, 1031, 1885
GlaI	GCGC	2 cut(s)	205, 1052
GsuI	CTGGAG	2 cut(s)	622, 1525
HaeIII	GGCC	9 cut(s)	36, 64, 221, 247, 271, 410, 545, 585, 975
HgaI	GACGC	2 cut(s)	631, 1828
HhaI	GCGC	2 cut(s)	206, 1053
Hin1I	GRCGYC	2 cut(s)	285, 1839
Hin6I	GCGC	2 cut(s)	204, 1051
HinP1I	GCGC	2 cut(s)	204, 1051
HindIII	AAGCTT	2 cut(s)	660, 1676
HphI	GGTGA	8 cut(s)	177, 220, 307, 343, 640, 841, 1508, 1742
Hpy166II	GTNNAC	4 cut(s)	124, 565, 1468, 1656
Hpy188I	TCNGA	7 cut(s)	345, 737, 1235, 1281, 1314, 1683, 1813
Hpy8I	GTNNAC	4 cut(s)	124, 565, 1468, 1656
Hpy99I	CGWCG	8 cut(s)	365, 539, 584, 890, 1105, 1379, 1871, 1874
HpyAV	CCTTC	4 cut(s)	400, 670, 1086, 1588
HpyCH4III	ACNGT	6 cut(s)	214, 376, 871, 918, 1310, 1820
HpyCH4IV	ACGT	6 cut(s)	177, 198, 285, 537, 653, 885
HpyCH4V	TGCA	9 cut(s)	217, 401, 439, 565, 944, 1150, 1347, 1356, 1446
HpyF3I	CTNAG	3 cut(s)	266, 392, 897
HpySE526I	ACGT	6 cut(s)	177, 198, 285, 537, 653, 885
Hsp92I	GRCGYC	2 cut(s)	285, 1839
HspAI	GCGC	2 cut(s)	204, 1051
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
LmnI	GCTCC	4 cut(s)	47, 507, 515, 1597
Lsp1109I	GCAGC	9 cut(s)	249, 730, 1128, 1134, 1156, 1162, 1213, 1305, 1737
LweI	GCATC	1 cut(s)	1716
MaeI	CTAG	5 cut(s)	617, 747, 987, 1031, 1885
MaeII	ACGT	6 cut(s)	177, 198, 285, 537, 653, 885
MaeIII	GTNAC	9 cut(s)	183, 208, 281, 295, 370, 628, 1129, 1558, 1829
MalI	GATC	8 cut(s)	227, 368, 390, 779, 800, 1250, 1635, 1689
MboI	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
MboII	GAAGA	9 cut(s)	712, 844, 1076, 1117, 1250, 1361, 1397, 1525, 1693
MflI	RGATCY	2 cut(s)	777, 1687
MhlI	GDGCHC	7 cut(s)	174, 512, 547, 567, 754, 930, 1602
MluCI	AATT	7 cut(s)	680, 713, 841, 994, 1045, 1059, 1522
MlyI	GAGTC	5 cut(s)	244, 614, 1034, 1082, 1802
MmeI	TCCRAC	2 cut(s)	294, 1735
MroXI	GAANNNNTTC	2 cut(s)	1096, 1365
MseI	TTAA	2 cut(s)	1746, 1851
MslI	CAYNNNNRTG	3 cut(s)	602, 1280, 1791
MspA1I	CMGCKG	3 cut(s)	242, 828, 1147
Mva1269I	GAATGC	2 cut(s)	1084, 1347
MvaI	CCWGG	4 cut(s)	38, 1121, 1844, 1862
MvnI	CGCG	5 cut(s)	206, 242, 1053, 1222, 1374
NciI	CCSGG	8 cut(s)	30, 44, 45, 492, 816, 925, 1666, 1667
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
NmeAIII	GCCGAG	2 cut(s)	76, 602
NmuCI	GTSAC	8 cut(s)	183, 208, 281, 295, 370, 628, 1558, 1829
NruI	TCGCGA	1 cut(s)	1374
NspI	RCATGY	3 cut(s)	401, 439, 743
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	1245
PaqCI	CACCTGC	2 cut(s)	196, 319
PceI	AGGCCT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	2 cut(s)	1619, 1863
PctI	GAATGC	2 cut(s)	1084, 1347
PdmI	GAANNNNTTC	2 cut(s)	1096, 1365
PfeI	GAWTC	6 cut(s)	301, 421, 556, 1253, 1265, 1366
Pfl23II	CGTACG	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	1126
PinAI	ACCGGT	1 cut(s)	11
PleI	GAGTC	5 cut(s)	244, 614, 1033, 1081, 1802
PpsI	GAGTC	5 cut(s)	244, 614, 1033, 1081, 1802
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	1851
Psp124BI	GAGCTC	2 cut(s)	512, 754
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	4 cut(s)	36, 1119, 1842, 1860
PspEI	GGTNACC	1 cut(s)	628
PspGI	CCWGG	4 cut(s)	36, 1119, 1842, 1860
PspLI	CGTACG	1 cut(s)	195
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	9 cut(s)	40, 63, 220, 245, 354, 427, 494, 543, 544
PspPPI	RGGWCCY	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	1152
PstNI	CAGNNNCTG	1 cut(s)	1318
PsuI	RGATCY	2 cut(s)	777, 1687
PvuII	CAGCTG	2 cut(s)	828, 1147
RruI	TCGCGA	1 cut(s)	1374
RsaI	GTAC	2 cut(s)	197, 500
RsaNI	GTAC	2 cut(s)	196, 499
RseI	CAYNNNNRTG	3 cut(s)	602, 1280, 1791
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	512, 754
SacII	CCGCGG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	1746, 1851
Sau3AI	GATC	8 cut(s)	225, 366, 388, 777, 798, 1248, 1633, 1687
Sau96I	GGNCC	9 cut(s)	40, 63, 220, 245, 354, 427, 494, 543, 544
SchI	GAGTC	5 cut(s)	244, 614, 1034, 1082, 1802
SduI	GDGCHC	7 cut(s)	174, 512, 547, 567, 754, 930, 1602
SfaNI	GCATC	1 cut(s)	1716
SfcI	CTRYAG	2 cut(s)	1148, 1819
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SinI	GGWCC	4 cut(s)	40, 354, 427, 494
SmaI	CCCGGG	2 cut(s)	45, 1667
SmiMI	CAYNNNNRTG	3 cut(s)	602, 1280, 1791
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	7 cut(s)	680, 713, 841, 994, 1045, 1059, 1522
SseBI	AGGCCT	1 cut(s)	410
SspMI	CTAG	5 cut(s)	617, 747, 987, 1031, 1885
SstI	GAGCTC	2 cut(s)	512, 754
StuI	AGGCCT	1 cut(s)	410
StyI	CCWWGG	4 cut(s)	411, 592, 781, 1139
TaaI	ACNGT	6 cut(s)	214, 376, 871, 918, 1310, 1820
TaiI	ACGT	6 cut(s)	180, 201, 288, 540, 656, 888
TaqI	TCGA	8 cut(s)	698, 729, 801, 983, 1088, 1103, 1251, 1613
TasI	AATT	7 cut(s)	680, 713, 841, 994, 1045, 1059, 1522
TauI	GCSGC	5 cut(s)	194, 242, 1663, 1742, 1839
TfiI	GAWTC	6 cut(s)	301, 421, 556, 1253, 1265, 1366
Tru1I	TTAA	2 cut(s)	1746, 1851
Tru9I	TTAA	2 cut(s)	1746, 1851
TscAI	CASTG	4 cut(s)	862, 1083, 1358, 1823
TseFI	GTSAC	8 cut(s)	183, 208, 281, 295, 370, 628, 1558, 1829
TseI	GCWGC	9 cut(s)	262, 743, 1116, 1144, 1147, 1150, 1201, 1318, 1725
Tsp45I	GTSAC	8 cut(s)	183, 208, 281, 295, 370, 628, 1558, 1829
TspDTI	ATGAA	4 cut(s)	167, 779, 1398, 1502
TspGWI	ACGGA	2 cut(s)	486, 1700
TspMI	CCCGGG	2 cut(s)	43, 1665
TspRI	CASTG	4 cut(s)	862, 1083, 1358, 1823
Van91I	CCANNNNNTGG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	4 cut(s)	40, 354, 427, 494
VspI	ATTAAT	1 cut(s)	1851
XapI	RAATTY	3 cut(s)	713, 841, 1045
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	3 cut(s)	401, 439, 743
XcmI	CCANNNNNNNNNTGG	3 cut(s)	157, 1488, 1718
XmaI	CCCGGG	2 cut(s)	43, 1665
XmnI	GAANNNNTTC	2 cut(s)	1096, 1365
XspI	CTAG	5 cut(s)	617, 747, 987, 1031, 1885
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.