Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Forward (+)

54063215 .. 54066808

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG317800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGGCTGAAACCGGTTTCGTCCGGTTTCCGGGTGGCCTGGACCCGGGAGCCGAGGAGTTCAGGCCCAGAAACCCGAACCCGATACCCCTATTCAGCCCACCACCACCACCGCCTTTGCCACACCAAGTTTACTATCCCTACCCACCGCCACCGCCACCACCACCGCCCATGAACGAAGTGGTGGCGGTGCCCTACGTGCCGTCACCCGCGGCGTACGTTAGCGCGGTGACGGTGCAGGCCCCGATCCCGCCTCCGGCCGCGGGGCCGACTCGGGCGGTGCTGCTGAGGCCGGTGCCGTGTGACGTCAGCGAGGTGACGATTCGGCGGGAGTTGGAGGCGTTCGGGCAGGTGAGGTGGGTCCAGATGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTCTACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGATTCGGGACCAGCACATGCAACACCAACCACCCACCCGCCCTCCTCGTAATTCCGGTCCGTACCACCGGAGCTCCTCCGCCGTGATTGTCAGCCCCGACGTGTGGGCCCACTTCGTGATTCCGGTGCACACCGCAATCCCCGAGGGCCACAACCAAGGCACCATCGTGATTTTCAATCTCGACTCGGCGGTGACCACCTCCAGCGTCAGGCAGACGTTCCAAGCATTTGGTGCTGTGAAGGAATTGAGGGAGACACCCTCCAAGAAGCACCAGAAATTCGTGGAGTTTTTCGACGTCAGACACGCTGCTAGAGCTCTCAAGGAGATGAACGGGAAGGAGATCCATGGCAAACAGATTGTGATCGAGTTCAGTCGCCCCGGAGGCAACAGCTGGAAGAAGCTGAATTCTCTCACCACCACTGCCGTCCCAACTGTCGTCTCTGCCAACGTTGCTTCGCCTGAGTTGTATCTGCCCGAACCGTTCTCCGGCCACTCTCGTTTCAATGCCGTCTCGCCGCTAATGTATGGTTCACAAGGCCAGTGTTCTACTAGGACTAATTCGGGAAGTGGAAATGTTGGTGTGGAGTCTCTAGTGGCGGAGTTGAATTTGGGCGGTGGAATTGAAGAGAGGGAGTCAGTGGGGCATTCGAGAAGGGCTTCGTCGAAGAAGCAAAGCAGCAGCCAGGCAATGGTAACGAGTCCAAGGCAGCTGCAGCAACCGCCGCCACCGCCACCGAGGAGTAGTAGGGGAAAGAGAGGAAAGCAGCCCAAGAAGTATGATACTCGCTTTCTAATCAAAGAAGACGTCATGGTTGAATCCACAAGCGATTCAAGAACCACTCTGATGATCAAGAACATACCGAACAAATACAGGTGGGTTTGCTCGTCCTCTACTAACTTTTACATGTATGTACTTGTGAGTTTTTCATTTTTGAATTTCATGAGCTTGTGTCTGCTTTGGGGCTATGGCATTATTTACAGTCAGAAGCTGCTATTGAGTATGCTGGACAACCACTGCATTCACTGCAACGAACAGATTCTTCGCGACGGCGATGAAGGCCAGCCTTTGTCCTCCTACGATTTCGTTTATCTCCCCATTGATTTCAATAACAAATGCAATGTAGGTTATGGGTTTGTTAACATGACAAGCCCAGAGGCAACATGGAGGCTTTACAAAGCCTTTCATCACCAAAATTGGGAGGTCTTCAACTCCAGAAAGATCTGTGAAGTCACCTACGCAAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTTCAAGAACTCCAAGTTCCCGAGCGAAATGGATCACTACTTGCCGGTTGTGTTTACGCCACCCCGGGATGGCAAGCTTCTGTCGGATCCACTCCCCATCTTCGGCATCCAACACAAGTCCGGCAGCAACTCCTCCGCCGCCGTTAATCACCCCATTACTCTCCTCCTGCCTCCATCACATCAACATAACCATGATGACATGGATGACTCTGACCACTGTAGTAGCCGTAACGGCGGCGTTCTGGGTATTAATGACGACCAGGACGACGACGACCAAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

664

Amino Acids

73.97

Weight (kDa)

7.38

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	201 - 265	9e-11	RNA recognition motif
RRM_2	PF04059	489 - 572	4.2e-26	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
AatII	GACGTC	3 cut(s)	306, 735, 1245
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	3 cut(s)	187, 292, 596
AccB7I	CCANNNNNTGG	1 cut(s)	1126
AccII	CGCG	4 cut(s)	209, 224, 260, 1482
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	6 cut(s)	238, 392, 772, 1749, 1790, 1803
AcoI	YGGCCR	2 cut(s)	255, 925
AcsI	RAATTY	4 cut(s)	713, 841, 1042, 1372
AcyI	GRCGYC	3 cut(s)	303, 732, 1242
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	3 cut(s)	215, 500, 1350
AflIII	ACRYGT	2 cut(s)	537, 1341
AgeI	ACCGGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	3 cut(s)	36, 1119, 1968
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	9 cut(s)	510, 752, 828, 838, 1147, 1383, 1426, 1786, 1992
AluI	AGCT	9 cut(s)	510, 752, 828, 838, 1147, 1383, 1426, 1786, 1992
Alw21I	GWGCWC	4 cut(s)	512, 567, 754, 1710
Alw26I	GTCTC	4 cut(s)	683, 880, 952, 1029
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	6 cut(s)	238, 392, 772, 1749, 1790, 1803
AlwNI	CAGNNNCTG	1 cut(s)	1426
Ama87I	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	563
ApoI	RAATTY	4 cut(s)	713, 841, 1042, 1372
ArsI	GACNNNNNNTTYG	2 cut(s)	1227, 1259
AseI	ATTAAT	1 cut(s)	1959
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	1093, 1473
AspLEI	GCGC	1 cut(s)	224
AsuC2I	CCSGG	6 cut(s)	30, 44, 45, 816, 1774, 1775
AsuHPI	GGTGA	9 cut(s)	195, 238, 325, 361, 640, 841, 1616, 1660, 1850
AvaI	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
AvaII	GGWCC	5 cut(s)	40, 358, 372, 445, 494
BaeGI	GKGCMC	3 cut(s)	192, 547, 567
BamHI	GGATCC	1 cut(s)	1795
BanI	GGYRCC	3 cut(s)	187, 292, 596
BanII	GRGCYC	3 cut(s)	512, 547, 754
BbsI	GAAGAC	2 cut(s)	1245, 1633
Bbv12I	GWGCWC	4 cut(s)	512, 567, 754, 1710
BbvCI	CCTCAGC	1 cut(s)	284
BccI	CCATC	5 cut(s)	358, 608, 1772, 1814, 1891
BceAI	ACGGC	9 cut(s)	184, 280, 503, 845, 929, 1501, 1835, 1920, 1957
BciT130I	CCWGG	3 cut(s)	38, 1121, 1970
BclI	TGATCA	1 cut(s)	1284
BcnI	CCSGG	6 cut(s)	30, 44, 45, 816, 1774, 1775
BcoDI	GTCTC	4 cut(s)	683, 880, 952, 1029
BfaI	CTAG	4 cut(s)	747, 987, 1028, 1993
BfmI	CTRYAG	2 cut(s)	1148, 1927
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	2 cut(s)	819, 1941
BglII	AGATCT	1 cut(s)	1656
Bme1390I	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1121, 1774, 1775, 1970
Bme18I	GGWCC	5 cut(s)	40, 358, 372, 445, 494
BmeT110I	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
BmgBI	CACGTC	1 cut(s)	538
BmrFI	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1121, 1774, 1775, 1970
BmsI	GCATC	1 cut(s)	1824
BpiI	GAAGAC	2 cut(s)	1245, 1633
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BpmI	CTGGAG	2 cut(s)	622, 1633
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	6 cut(s)	30, 44, 45, 816, 1774, 1775
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	3 cut(s)	303, 732, 1242
BsaWI	WCCGGW	5 cut(s)	11, 21, 491, 504, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 494, 524
Bse118I	RCCGGY	3 cut(s)	11, 289, 1753
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	2 cut(s)	1131, 1561
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	38, 1121, 1970
BseGI	GGATG	3 cut(s)	1783, 1815, 1918
BseJI	GATNNNNATC	1 cut(s)	797
BseMI	GCAATG	2 cut(s)	1131, 1561
BseMII	CTCAG	3 cut(s)	275, 424, 888
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	6 cut(s)	68, 471, 502, 1189, 1831, 1862
BseSI	GKGCMC	3 cut(s)	192, 547, 567
BseX3I	CGGCCG	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	4 cut(s)	209, 224, 260, 1482
Bsh1285I	CGRYCG	1 cut(s)	258
BshNI	GGYRCC	3 cut(s)	187, 292, 596
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	4 cut(s)	512, 567, 754, 1710
BsiHKCI	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	458, 848
BsmAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BsmBI	CGTCTC	2 cut(s)	880, 952
BsmFI	GGGAC	2 cut(s)	458, 848
BsmI	GAATGC	2 cut(s)	1081, 1455
BsoBI	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	6 cut(s)	192, 512, 547, 567, 754, 1710
Bsp143I	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
Bsp19I	CCATGG	1 cut(s)	781
Bsp68I	TCGCGA	1 cut(s)	1482
BspCNI	CTCAG	3 cut(s)	276, 423, 889
BspFNI	CGCG	4 cut(s)	209, 224, 260, 1482
BspHI	TCATGA	1 cut(s)	1377
BspMAI	CTGCAG	1 cut(s)	1152
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	6 cut(s)	238, 392, 772, 1749, 1790, 1803
BspT107I	GGYRCC	3 cut(s)	187, 292, 596
BsrDI	GCAATG	2 cut(s)	1131, 1561
BsrFI	RCCGGY	3 cut(s)	11, 289, 1753
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	3 cut(s)	11, 289, 1753
BssMI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
BssNI	GRCGYC	3 cut(s)	303, 732, 1242
BssT1I	CCWWGG	4 cut(s)	429, 592, 781, 1139
Bst2UI	CCWGG	3 cut(s)	38, 1121, 1970
Bst4CI	ACNGT	6 cut(s)	232, 394, 871, 918, 1418, 1928
Bst6I	CTCTTC	1 cut(s)	1056
BstACI	GRCGYC	3 cut(s)	303, 732, 1242
BstAPI	GCANNNNNTGC	2 cut(s)	668, 1461
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	237, 417, 1499, 1784
BstDEI	CTNAG	3 cut(s)	284, 410, 897
BstDSI	CCRYGG	3 cut(s)	207, 258, 781
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	1783, 1815, 1918
BstFNI	CGCG	4 cut(s)	209, 224, 260, 1482
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	9 cut(s)	246, 387, 409, 780, 801, 1287, 1659, 1744, 1798
BstMAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BstMBI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
BstMCI	CGRYCG	1 cut(s)	258
BstNI	CCWGG	3 cut(s)	38, 1121, 1970
BstNSI	RCATGY	3 cut(s)	419, 457, 1345
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	9 cut(s)	28, 36, 42, 43, 814, 1119, 1772, 1773, 1968
BstSFI	CTRYAG	2 cut(s)	1148, 1927
BstSLI	GKGCMC	3 cut(s)	192, 547, 567
BstUI	CGCG	4 cut(s)	209, 224, 260, 1482
BstV2I	GAAGAC	2 cut(s)	1245, 1633
BstX2I	RGATCY	3 cut(s)	777, 1656, 1795
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	3 cut(s)	777, 1656, 1795
BstZI	CGGCCG	1 cut(s)	255
BtgI	CCRYGG	3 cut(s)	207, 258, 781
BtgZI	GCGATG	1 cut(s)	1503
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	3 cut(s)	1783, 1815, 1918
BtsI	GCAGTG	3 cut(s)	855, 1450, 1459
BtsIMutI	CAGTG	6 cut(s)	855, 983, 1080, 1450, 1459, 1924
BtuMI	TCGCGA	1 cut(s)	1482
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	4 cut(s)	237, 417, 1499, 1784
CaiI	CAGNNNCTG	1 cut(s)	1426
CciI	TCATGA	1 cut(s)	1377
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	3 cut(s)	11, 289, 1753
Cfr42I	CCGCGG	2 cut(s)	210, 261
Cfr9I	CCCGGG	2 cut(s)	43, 1773
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	214, 499, 1349
CspAI	ACCGGT	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CspI	CGGWCCG	1 cut(s)	494
CviQI	GTAC	3 cut(s)	214, 499, 1349
DdeI	CTNAG	3 cut(s)	284, 410, 897
DpnI	GATC	9 cut(s)	245, 386, 408, 779, 800, 1286, 1658, 1743, 1797
DpnII	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
DraIII	CACNNNGTG	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	255, 925
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	4 cut(s)	449, 505, 1049, 1834
Ecl136II	GAGCTC	2 cut(s)	510, 752
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	4 cut(s)	429, 592, 781, 1139
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	3 cut(s)	512, 547, 754
Eco47I	GGWCC	5 cut(s)	40, 358, 372, 445, 494
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	510, 752
Eco88I	CYCGRG	5 cut(s)	43, 270, 578, 1729, 1773
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	2 cut(s)	510, 752
EcoO109I	RGGNCCY	2 cut(s)	238, 372
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	36, 1119, 1968
EcoT14I	CCWWGG	4 cut(s)	429, 592, 781, 1139
EcoT38I	GRGCYC	3 cut(s)	512, 547, 754
ErhI	CCWWGG	4 cut(s)	429, 592, 781, 1139
Esp3I	CGTCTC	2 cut(s)	880, 952
FalI	AAGNNNNNCTT	2 cut(s)	1694, 1726
FaqI	GGGAC	2 cut(s)	458, 848
FauI	CCCGC	5 cut(s)	214, 253, 255, 318, 482
FbaI	TGATCA	1 cut(s)	1284
FokI	GGATG	3 cut(s)	1790, 1802, 1925
FriOI	GRGCYC	3 cut(s)	512, 547, 754
FspBI	CTAG	4 cut(s)	747, 987, 1028, 1993
GlaI	GCGC	1 cut(s)	223
GsuI	CTGGAG	2 cut(s)	622, 1633
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	3 cut(s)	303, 732, 1242
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	1576
HindII	GTYRAC	1 cut(s)	1576
HindIII	AAGCTT	1 cut(s)	1784
HpaI	GTTAAC	1 cut(s)	1576
HphI	GGTGA	9 cut(s)	195, 238, 325, 361, 640, 841, 1616, 1660, 1850
Hpy166II	GTNNAC	5 cut(s)	130, 565, 968, 1576, 1764
Hpy188I	TCNGA	5 cut(s)	737, 1281, 1422, 1795, 1921
Hpy8I	GTNNAC	5 cut(s)	130, 565, 968, 1576, 1764
Hpy99I	CGWCG	7 cut(s)	383, 539, 734, 1102, 1487, 1979, 1982
HpyAV	CCTTC	6 cut(s)	418, 670, 766, 1083, 1487, 1696
HpyCH4III	ACNGT	6 cut(s)	232, 394, 871, 918, 1418, 1928
HpyCH4IV	ACGT	8 cut(s)	195, 216, 303, 537, 653, 732, 885, 1242
HpyCH4V	TGCA	8 cut(s)	235, 419, 457, 565, 1150, 1455, 1464, 1554
HpyF3I	CTNAG	3 cut(s)	284, 410, 897
HpySE526I	ACGT	8 cut(s)	195, 216, 303, 537, 653, 732, 885, 1242
Hsp92I	GRCGYC	3 cut(s)	303, 732, 1242
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	1284
KspAI	GTTAAC	1 cut(s)	1576
KspI	CCGCGG	2 cut(s)	210, 261
Kzo9I	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
LmnI	GCTCC	4 cut(s)	47, 507, 515, 1705
LweI	GCATC	1 cut(s)	1824
MaeI	CTAG	4 cut(s)	747, 987, 1028, 1993
MaeII	ACGT	8 cut(s)	195, 216, 303, 537, 653, 732, 885, 1242
MaeIII	GTNAC	9 cut(s)	201, 226, 299, 313, 388, 628, 1129, 1666, 1937
MalI	GATC	9 cut(s)	245, 386, 408, 779, 800, 1286, 1658, 1743, 1797
MboI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
MboII	GAAGA	7 cut(s)	844, 1073, 1114, 1250, 1469, 1633, 1801
MflI	RGATCY	3 cut(s)	777, 1656, 1795
MhlI	GDGCHC	6 cut(s)	192, 512, 547, 567, 754, 1710
MluCI	AATT	9 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1372, 1630
MlyI	GAGTC	6 cut(s)	262, 614, 1031, 1079, 1144, 1910
MmeI	TCCRAC	3 cut(s)	312, 1773, 1843
MroXI	GAANNNNTTC	2 cut(s)	1093, 1473
MseI	TTAA	3 cut(s)	1575, 1854, 1959
MslI	CAYNNNNRTG	3 cut(s)	602, 1280, 1899
MspA1I	CMGCKG	4 cut(s)	209, 260, 828, 1147
MspR9I	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1121, 1774, 1775, 1970
Mva1269I	GAATGC	2 cut(s)	1081, 1455
MvaI	CCWGG	3 cut(s)	38, 1121, 1970
MvnI	CGCG	4 cut(s)	209, 224, 260, 1482
NciI	CCSGG	6 cut(s)	30, 44, 45, 816, 1774, 1775
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
NmeAIII	GCCGAG	2 cut(s)	76, 602
NmuCI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1666
NruI	TCGCGA	1 cut(s)	1482
NspI	RCATGY	3 cut(s)	419, 457, 1345
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	1377
PaqCI	CACCTGC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	428
PciI	ACATGT	1 cut(s)	1341
PcsI	WCGNNNNNNNCGW	1 cut(s)	1971
PctI	GAATGC	2 cut(s)	1081, 1455
PdmI	GAANNNNTTC	2 cut(s)	1093, 1473
PfeI	GAWTC	6 cut(s)	319, 439, 556, 1253, 1265, 1474
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	1126
PinAI	ACCGGT	1 cut(s)	11
PleI	GAGTC	6 cut(s)	262, 614, 1030, 1078, 1143, 1910
PpsI	GAGTC	6 cut(s)	262, 614, 1030, 1078, 1143, 1910
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	372
PscI	ACATGT	1 cut(s)	1341
PshBI	ATTAAT	1 cut(s)	1959
Psp124BI	GAGCTC	2 cut(s)	512, 754
Psp1406I	AACGTT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	36, 1119, 1968
PspEI	GGTNACC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	36, 1119, 1968
PspLI	CGTACG	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	543
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	1152
PstNI	CAGNNNCTG	1 cut(s)	1426
PsuI	RGATCY	3 cut(s)	777, 1656, 1795
PvuII	CAGCTG	2 cut(s)	828, 1147
RruI	TCGCGA	1 cut(s)	1482
RsaI	GTAC	3 cut(s)	215, 500, 1350
RsaNI	GTAC	3 cut(s)	214, 499, 1349
RseI	CAYNNNNRTG	3 cut(s)	602, 1280, 1899
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	512, 754
SacII	CCGCGG	2 cut(s)	210, 261
SaqAI	TTAA	3 cut(s)	1575, 1854, 1959
Sau3AI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1284, 1656, 1741, 1795
SchI	GAGTC	6 cut(s)	262, 614, 1031, 1079, 1144, 1910
ScrFI	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1121, 1774, 1775, 1970
SduI	GDGCHC	6 cut(s)	192, 512, 547, 567, 754, 1710
SfaNI	GCATC	1 cut(s)	1824
SfcI	CTRYAG	2 cut(s)	1148, 1927
Sfr303I	CCGCGG	2 cut(s)	210, 261
SgrBI	CCGCGG	2 cut(s)	210, 261
SinI	GGWCC	5 cut(s)	40, 358, 372, 445, 494
SmaI	CCCGGG	2 cut(s)	45, 1775
SmiMI	CAYNNNNRTG	3 cut(s)	602, 1280, 1899
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	9 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1372, 1630
SseBI	AGGCCT	1 cut(s)	428
SspMI	CTAG	4 cut(s)	747, 987, 1028, 1993
SstI	GAGCTC	2 cut(s)	512, 754
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	9 cut(s)	28, 36, 42, 43, 814, 1119, 1772, 1773, 1968
StyI	CCWWGG	4 cut(s)	429, 592, 781, 1139
TaaI	ACNGT	6 cut(s)	232, 394, 871, 918, 1418, 1928
TaiI	ACGT	8 cut(s)	198, 219, 306, 540, 656, 735, 888, 1245
TaqI	TCGA	5 cut(s)	618, 729, 801, 1085, 1100
TasI	AATT	9 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1372, 1630
TatI	WGTACW	1 cut(s)	1348
TauI	GCSGC	6 cut(s)	212, 260, 955, 1162, 1850, 1947
TfiI	GAWTC	6 cut(s)	319, 439, 556, 1253, 1265, 1474
Tru1I	TTAA	3 cut(s)	1575, 1854, 1959
Tru9I	TTAA	3 cut(s)	1575, 1854, 1959
TscAI	CASTG	6 cut(s)	862, 983, 1080, 1457, 1466, 1931
TseFI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1666
Tsp45I	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1666
TspDTI	ATGAA	6 cut(s)	185, 779, 1353, 1366, 1506, 1610
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	2 cut(s)	43, 1773
TspRI	CASTG	6 cut(s)	862, 983, 1080, 1457, 1466, 1931
Van91I	CCANNNNNTGG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	5 cut(s)	40, 358, 372, 445, 494
VspI	ATTAAT	1 cut(s)	1959
XapI	RAATTY	4 cut(s)	713, 841, 1042, 1372
XceI	RCATGY	3 cut(s)	419, 457, 1345
XcmI	CCANNNNNNNNNTGG	2 cut(s)	175, 1596
XmaI	CCCGGG	2 cut(s)	43, 1773
XmnI	GAANNNNTTC	2 cut(s)	1093, 1473
XspI	CTAG	4 cut(s)	747, 987, 1028, 1993
ZraI	GACGTC	3 cut(s)	304, 733, 1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.