Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Forward (+)

56612061 .. 56615512

Gene Structure 3452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGCTGAAACCGGTTTCGTCCGGTTTCCGGGTGGCCTGGACCCGGGAGCCGAGGAGTTCAGGCCCAGAAACCCGAACCCGATACCCCTATTCAGCCCACCACCACCACCGCCTTTGCCACACCAAGTTTACTATCCCTACCCACCGCCACCGCCACCACCACCGCCCATGAACGAAGTGGTGGCGGTGCCCTACGTGCCGTCACCCGCGGCGTACGTTAGCGCGGTGACGGTGCAGGCCCCGATCCCGCCTCCGGCCGCGGGGCCGACTCGGGCGGTGCTGCTGAGGCCGGTGCCGTGTGACGTCAGCGAGGTGACGATTCGGCGGGAGTTGGAGGCGTTCGGGCAGGTGAGGTGGGTCCAGATGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTCTACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGATTCGGGAGCAGCACATGCAACACCAACCACCCACCCGCCCTCCTCGTAATTCCGGTCCGTACCACCGGAGCTCCTCCGCCGTGATTGTCAGCCCCGACACGTGGGCCCACTTCGTGATTCCGGTTCACACCGCAATCCCCGAGGGCCACAACCAAGGCACCATCGTGATTTTCAATCTCGACTCGGCGGTGACCACCTCCAGCGTCAGGCAGACGTTCCAAGCTTTTGGTGCTGTGAAGGAATTGAGGGAGACACCCTCCAAGAAGCACCAGAAATTCGTGGAGTTTTTCGACGTCAGACACGCTGCTAGAGCTCTCAAGGAGATGAACGGCAAGGAGATCCATGGCAAACAGATTGTGATCGAGTTCAGTCGCCCCGGAGGCAACAGCTGGAAGAAGCTGAATTCTCTCACCACCACTGCCGTCCCAACTGTCGTCTCTGCCAACGTTGCTTCGCCTGAGTTGTATCTGCCCGAACCGTTCTCCGGCCACTCTCGTTTCGATGCCGTCTCGCCGCTAATGTATGGTTCACAAGGCCAGTGTTCTACTAGGACTAATTCGGGAAGTGGAAATGTTGGTGTGGAGTCTCTAGTGGCGGAGTTGAATTTGGGCGGTGGAATTGAAGAGAGGGAGTCAGCGGGGCATTCAAGAAGGGCTTCGTCGAAGAAGCAAAGCAGCCAGGCAATGGTAACGAGTCCAAGGCAGCTGCAGCAACCGCCGCCACCGCCACCGAGGAGTAGTAGGGGAAAGAGAGGAAAGCAGCCCAAGAAGTATGATACTCGCTTTCTAATCAAAGAAGACGTCATGGTTGAATCCACAAGCGATTCAAGAACCACTCTGATGATCAAGAACATACCGAACAAATACAGTCAGAAGCTGCTATTGAGTATGCTGGACAACCACTGCATTCACTGCAACGAACAGATTCTTCGCGACGGCGATGAAGGCCAGCCTTTGTCCTCCTACGATTTCGTTTATCTCCCCATTGATTTCAATAACAAATGCAATGTAGGTTATGGGTTTGTTAACATGACAAGCCCAGAGGCAACATGGAGGCTTTACAAAGCCTTTCATCACCAAAATTGGGAGGTCTTCAACTCCAGAAAGATCTGTGAAGTCACCTACGCAAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTTCAAGAACTCCAAGTTCCCGAGCGAAATGGATCACTACTTGCCGGTTGTGTTTACGCCGCCCCGGGATGGCAAGCTTCTGTCGGATCCACTCCCCATCTTCGGCATCCAACACAAGTCCGGCAGCAACTCCTCCGCCGCCGTTAATCACCCCATTACTCTCCTCCTGCCTCCATCACATCAACATAACCATGATGACATGGATGACTCTGACCACTGTAGTAGCCGTAACGGCGGCGTTCTGGGTATTAATGACGACCAGGACGACGACGACCAAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

627

Amino Acids

69.58

Weight (kDa)

6.96

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	201 - 265	8.3e-11	RNA recognition motif
RRM_2	PF04059	423 - 535	4.2e-33	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
AatII	GACGTC	3 cut(s)	306, 735, 1242
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	3 cut(s)	187, 292, 596
AccB7I	CCANNNNNTGG	1 cut(s)	1123
AccII	CGCG	4 cut(s)	209, 224, 260, 1371
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	6 cut(s)	238, 392, 772, 1638, 1679, 1692
AcoI	YGGCCR	2 cut(s)	255, 925
AcsI	RAATTY	3 cut(s)	713, 841, 1042
AcvI	CACGTG	1 cut(s)	540
AcyI	GRCGYC	3 cut(s)	303, 732, 1239
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	2 cut(s)	215, 500
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	11
AjnI	CCWGG	3 cut(s)	36, 1116, 1857
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	9 cut(s)	510, 662, 752, 828, 838, 1144, 1315, 1675, 1881
AluI	AGCT	9 cut(s)	510, 662, 752, 828, 838, 1144, 1315, 1675, 1881
Alw21I	GWGCWC	3 cut(s)	512, 754, 1599
Alw26I	GTCTC	4 cut(s)	683, 880, 952, 1029
AlwI	GGATC	6 cut(s)	238, 392, 772, 1638, 1679, 1692
AlwNI	CAGNNNCTG	1 cut(s)	1315
Ama87I	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
ApaI	GGGCCC	1 cut(s)	547
ApoI	RAATTY	3 cut(s)	713, 841, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	1224, 1256
AseI	ATTAAT	1 cut(s)	1848
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	1093, 1362
AspLEI	GCGC	1 cut(s)	224
AsuC2I	CCSGG	6 cut(s)	30, 44, 45, 816, 1663, 1664
AsuHPI	GGTGA	9 cut(s)	195, 238, 325, 361, 640, 841, 1505, 1549, 1739
AvaI	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
AvaII	GGWCC	4 cut(s)	40, 358, 372, 494
BaeGI	GKGCMC	2 cut(s)	192, 547
BamHI	GGATCC	1 cut(s)	1684
BanI	GGYRCC	3 cut(s)	187, 292, 596
BanII	GRGCYC	3 cut(s)	512, 547, 754
BbrPI	CACGTG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	1242, 1522
Bbv12I	GWGCWC	3 cut(s)	512, 754, 1599
BbvCI	CCTCAGC	1 cut(s)	284
BccI	CCATC	5 cut(s)	358, 608, 1661, 1703, 1780
BciT130I	CCWGG	3 cut(s)	38, 1118, 1859
BclI	TGATCA	1 cut(s)	1281
BcnI	CCSGG	6 cut(s)	30, 44, 45, 816, 1663, 1664
BcoDI	GTCTC	4 cut(s)	683, 880, 952, 1029
BfaI	CTAG	4 cut(s)	747, 987, 1028, 1882
BfmI	CTRYAG	2 cut(s)	1145, 1816
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	2 cut(s)	819, 1830
BglII	AGATCT	1 cut(s)	1545
Bme1390I	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1118, 1663, 1664, 1859
Bme18I	GGWCC	4 cut(s)	40, 358, 372, 494
BmeT110I	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
BmrFI	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1118, 1663, 1664, 1859
BmsI	GCATC	2 cut(s)	931, 1713
BpiI	GAAGAC	2 cut(s)	1242, 1522
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BpmI	CTGGAG	2 cut(s)	622, 1522
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	6 cut(s)	30, 44, 45, 816, 1663, 1664
BsaAI	YACGTR	2 cut(s)	196, 540
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	3 cut(s)	303, 732, 1239
BsaWI	WCCGGW	5 cut(s)	11, 21, 491, 504, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 494, 524
Bse118I	RCCGGY	3 cut(s)	11, 289, 1642
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	2 cut(s)	1128, 1450
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	38, 1118, 1859
BseGI	GGATG	3 cut(s)	1672, 1704, 1807
BseJI	GATNNNNATC	1 cut(s)	797
BseMI	GCAATG	2 cut(s)	1128, 1450
BseMII	CTCAG	3 cut(s)	275, 424, 888
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	6 cut(s)	68, 471, 502, 1186, 1720, 1751
BseSI	GKGCMC	2 cut(s)	192, 547
BseX3I	CGGCCG	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	4 cut(s)	209, 224, 260, 1371
Bsh1285I	CGRYCG	1 cut(s)	258
BshNI	GGYRCC	3 cut(s)	187, 292, 596
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	3 cut(s)	512, 754, 1599
BsiHKCI	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	848
BsmAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BsmBI	CGTCTC	2 cut(s)	880, 952
BsmFI	GGGAC	1 cut(s)	848
BsmI	GAATGC	2 cut(s)	1081, 1344
BsoBI	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	5 cut(s)	192, 512, 547, 754, 1599
Bsp143I	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
Bsp19I	CCATGG	1 cut(s)	781
Bsp68I	TCGCGA	1 cut(s)	1371
BspCNI	CTCAG	3 cut(s)	276, 423, 889
BspFNI	CGCG	4 cut(s)	209, 224, 260, 1371
BspMAI	CTGCAG	1 cut(s)	1149
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	6 cut(s)	238, 392, 772, 1638, 1679, 1692
BspT107I	GGYRCC	3 cut(s)	187, 292, 596
BsrDI	GCAATG	2 cut(s)	1128, 1450
BsrFI	RCCGGY	3 cut(s)	11, 289, 1642
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	3 cut(s)	11, 289, 1642
BssMI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
BssNI	GRCGYC	3 cut(s)	303, 732, 1239
BssT1I	CCWWGG	4 cut(s)	429, 592, 781, 1136
Bst2UI	CCWGG	3 cut(s)	38, 1118, 1859
Bst4CI	ACNGT	6 cut(s)	232, 394, 871, 918, 1307, 1817
Bst6I	CTCTTC	1 cut(s)	1056
BstACI	GRCGYC	3 cut(s)	303, 732, 1239
BstAPI	GCANNNNNTGC	2 cut(s)	454, 1350
BstBAI	YACGTR	2 cut(s)	196, 540
BstC8I	GCNNGC	4 cut(s)	237, 417, 1388, 1673
BstDEI	CTNAG	3 cut(s)	284, 410, 897
BstDSI	CCRYGG	3 cut(s)	207, 258, 781
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	1672, 1704, 1807
BstFNI	CGCG	4 cut(s)	209, 224, 260, 1371
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	9 cut(s)	246, 387, 409, 780, 801, 1284, 1548, 1633, 1687
BstMAI	GTCTC	4 cut(s)	683, 880, 952, 1029
BstMBI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
BstMCI	CGRYCG	1 cut(s)	258
BstNI	CCWGG	3 cut(s)	38, 1118, 1859
BstNSI	RCATGY	2 cut(s)	419, 457
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	9 cut(s)	28, 36, 42, 43, 814, 1116, 1661, 1662, 1857
BstSFI	CTRYAG	2 cut(s)	1145, 1816
BstSLI	GKGCMC	2 cut(s)	192, 547
BstUI	CGCG	4 cut(s)	209, 224, 260, 1371
BstV2I	GAAGAC	2 cut(s)	1242, 1522
BstX2I	RGATCY	3 cut(s)	777, 1545, 1684
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	3 cut(s)	777, 1545, 1684
BstZI	CGGCCG	1 cut(s)	255
BtgI	CCRYGG	3 cut(s)	207, 258, 781
BtgZI	GCGATG	1 cut(s)	1392
BtsCI	GGATG	3 cut(s)	1672, 1704, 1807
BtsI	GCAGTG	3 cut(s)	855, 1339, 1348
BtsIMutI	CAGTG	5 cut(s)	855, 983, 1339, 1348, 1813
BtuMI	TCGCGA	1 cut(s)	1371
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	4 cut(s)	237, 417, 1388, 1673
CaiI	CAGNNNCTG	1 cut(s)	1315
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	3 cut(s)	11, 289, 1642
Cfr42I	CCGCGG	2 cut(s)	210, 261
Cfr9I	CCCGGG	2 cut(s)	43, 1662
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	214, 499
CspAI	ACCGGT	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CspI	CGGWCCG	1 cut(s)	494
CviAII	CATG	9 cut(s)	169, 416, 454, 782, 1243, 1468, 1488, 1790, 1798
CviQI	GTAC	2 cut(s)	214, 499
DdeI	CTNAG	3 cut(s)	284, 410, 897
DpnI	GATC	9 cut(s)	245, 386, 408, 779, 800, 1283, 1547, 1632, 1686
DpnII	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
DraIII	CACNNNGTG	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	255, 925
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	4 cut(s)	449, 505, 1049, 1723
Ecl136II	GAGCTC	2 cut(s)	510, 752
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	4 cut(s)	429, 592, 781, 1136
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	3 cut(s)	512, 547, 754
Eco47I	GGWCC	4 cut(s)	40, 358, 372, 494
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	510, 752
Eco72I	CACGTG	1 cut(s)	540
Eco88I	CYCGRG	5 cut(s)	43, 270, 578, 1618, 1662
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	2 cut(s)	510, 752
EcoO109I	RGGNCCY	2 cut(s)	238, 372
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	36, 1116, 1857
EcoT14I	CCWWGG	4 cut(s)	429, 592, 781, 1136
EcoT38I	GRGCYC	3 cut(s)	512, 547, 754
ErhI	CCWWGG	4 cut(s)	429, 592, 781, 1136
Esp3I	CGTCTC	2 cut(s)	880, 952
FaeI	CATG	9 cut(s)	172, 419, 457, 785, 1246, 1471, 1491, 1793, 1801
FalI	AAGNNNNNCTT	4 cut(s)	1078, 1110, 1583, 1615
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	9 cut(s)	168, 415, 453, 781, 1242, 1467, 1487, 1789, 1797
FauI	CCCGC	6 cut(s)	214, 253, 255, 318, 482, 1069
FbaI	TGATCA	1 cut(s)	1281
FokI	GGATG	3 cut(s)	1679, 1691, 1814
FriOI	GRGCYC	3 cut(s)	512, 547, 754
FspBI	CTAG	4 cut(s)	747, 987, 1028, 1882
GlaI	GCGC	1 cut(s)	223
GsuI	CTGGAG	2 cut(s)	622, 1522
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	3 cut(s)	303, 732, 1239
Hin1II	CATG	9 cut(s)	172, 419, 457, 785, 1246, 1471, 1491, 1793, 1801
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	1465
HindII	GTYRAC	1 cut(s)	1465
HindIII	AAGCTT	2 cut(s)	660, 1673
HpaI	GTTAAC	1 cut(s)	1465
HphI	GGTGA	9 cut(s)	195, 238, 325, 361, 640, 841, 1505, 1549, 1739
Hpy166II	GTNNAC	5 cut(s)	130, 565, 968, 1465, 1653
Hpy188I	TCNGA	5 cut(s)	737, 1278, 1311, 1684, 1810
Hpy8I	GTNNAC	5 cut(s)	130, 565, 968, 1465, 1653
Hpy99I	CGWCG	6 cut(s)	383, 734, 1102, 1376, 1868, 1871
HpyAV	CCTTC	5 cut(s)	418, 670, 1083, 1376, 1585
HpyCH4III	ACNGT	6 cut(s)	232, 394, 871, 918, 1307, 1817
HpyCH4IV	ACGT	8 cut(s)	195, 216, 303, 539, 653, 732, 885, 1239
HpyCH4V	TGCA	7 cut(s)	235, 419, 457, 1147, 1344, 1353, 1443
HpyF3I	CTNAG	3 cut(s)	284, 410, 897
HpySE526I	ACGT	8 cut(s)	195, 216, 303, 539, 653, 732, 885, 1239
Hsp92I	GRCGYC	3 cut(s)	303, 732, 1239
Hsp92II	CATG	9 cut(s)	172, 419, 457, 785, 1246, 1471, 1491, 1793, 1801
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	1281
KspAI	GTTAAC	1 cut(s)	1465
KspI	CCGCGG	2 cut(s)	210, 261
Kzo9I	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
LmnI	GCTCC	5 cut(s)	47, 445, 507, 515, 1594
LweI	GCATC	2 cut(s)	931, 1713
MaeI	CTAG	4 cut(s)	747, 987, 1028, 1882
MaeII	ACGT	8 cut(s)	195, 216, 303, 539, 653, 732, 885, 1239
MaeIII	GTNAC	9 cut(s)	201, 226, 299, 313, 388, 628, 1126, 1555, 1826
MalI	GATC	9 cut(s)	245, 386, 408, 779, 800, 1283, 1547, 1632, 1686
MboI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
MboII	GAAGA	7 cut(s)	844, 1073, 1114, 1247, 1358, 1522, 1690
MflI	RGATCY	3 cut(s)	777, 1545, 1684
MhlI	GDGCHC	5 cut(s)	192, 512, 547, 754, 1599
MluCI	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1519
MlyI	GAGTC	6 cut(s)	262, 614, 1031, 1079, 1141, 1799
MmeI	TCCRAC	3 cut(s)	312, 1662, 1732
MroXI	GAANNNNTTC	2 cut(s)	1093, 1362
MseI	TTAA	3 cut(s)	1464, 1743, 1848
MslI	CAYNNNNRTG	3 cut(s)	602, 1277, 1788
MspA1I	CMGCKG	5 cut(s)	209, 260, 828, 1076, 1144
MspR9I	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1118, 1663, 1664, 1859
Mva1269I	GAATGC	2 cut(s)	1081, 1344
MvaI	CCWGG	3 cut(s)	38, 1118, 1859
MvnI	CGCG	4 cut(s)	209, 224, 260, 1371
NciI	CCSGG	6 cut(s)	30, 44, 45, 816, 1663, 1664
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
NlaIII	CATG	9 cut(s)	172, 419, 457, 785, 1246, 1471, 1491, 1793, 1801
NmeAIII	GCCGAG	2 cut(s)	76, 602
NmuCI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1555
NruI	TCGCGA	1 cut(s)	1371
NspI	RCATGY	2 cut(s)	419, 457
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	1860
PctI	GAATGC	2 cut(s)	1081, 1344
PdmI	GAANNNNTTC	2 cut(s)	1093, 1362
PfeI	GAWTC	6 cut(s)	319, 439, 556, 1250, 1262, 1363
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	1123
PinAI	ACCGGT	1 cut(s)	11
PleI	GAGTC	6 cut(s)	262, 614, 1030, 1078, 1140, 1799
PmaCI	CACGTG	1 cut(s)	540
PmlI	CACGTG	1 cut(s)	540
PpsI	GAGTC	6 cut(s)	262, 614, 1030, 1078, 1140, 1799
Ppu21I	YACGTR	2 cut(s)	196, 540
PpuMI	RGGWCCY	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	1848
Psp124BI	GAGCTC	2 cut(s)	512, 754
Psp1406I	AACGTT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	36, 1116, 1857
PspCI	CACGTG	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	36, 1116, 1857
PspLI	CGTACG	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	543
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	1149
PstNI	CAGNNNCTG	1 cut(s)	1315
PsuI	RGATCY	3 cut(s)	777, 1545, 1684
PvuII	CAGCTG	2 cut(s)	828, 1144
RruI	TCGCGA	1 cut(s)	1371
RsaI	GTAC	2 cut(s)	215, 500
RsaNI	GTAC	2 cut(s)	214, 499
RseI	CAYNNNNRTG	3 cut(s)	602, 1277, 1788
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	512, 754
SacII	CCGCGG	2 cut(s)	210, 261
SaqAI	TTAA	3 cut(s)	1464, 1743, 1848
Sau3AI	GATC	9 cut(s)	243, 384, 406, 777, 798, 1281, 1545, 1630, 1684
SchI	GAGTC	6 cut(s)	262, 614, 1031, 1079, 1141, 1799
ScrFI	CCNGG	9 cut(s)	30, 38, 44, 45, 816, 1118, 1663, 1664, 1859
SduI	GDGCHC	5 cut(s)	192, 512, 547, 754, 1599
SfaNI	GCATC	2 cut(s)	931, 1713
SfcI	CTRYAG	2 cut(s)	1145, 1816
Sfr303I	CCGCGG	2 cut(s)	210, 261
SgrBI	CCGCGG	2 cut(s)	210, 261
SinI	GGWCC	4 cut(s)	40, 358, 372, 494
SmaI	CCCGGG	2 cut(s)	45, 1664
SmiMI	CAYNNNNRTG	3 cut(s)	602, 1277, 1788
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1519
SseBI	AGGCCT	1 cut(s)	428
SspMI	CTAG	4 cut(s)	747, 987, 1028, 1882
SstI	GAGCTC	2 cut(s)	512, 754
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	9 cut(s)	28, 36, 42, 43, 814, 1116, 1661, 1662, 1857
StyI	CCWWGG	4 cut(s)	429, 592, 781, 1136
TaaI	ACNGT	6 cut(s)	232, 394, 871, 918, 1307, 1817
TaiI	ACGT	8 cut(s)	198, 219, 306, 542, 656, 735, 888, 1242
TaqI	TCGA	5 cut(s)	618, 729, 801, 939, 1100
TasI	AATT	8 cut(s)	487, 680, 713, 841, 994, 1042, 1056, 1519
TauI	GCSGC	7 cut(s)	212, 260, 955, 1159, 1660, 1739, 1836
TfiI	GAWTC	6 cut(s)	319, 439, 556, 1250, 1262, 1363
Tru1I	TTAA	3 cut(s)	1464, 1743, 1848
Tru9I	TTAA	3 cut(s)	1464, 1743, 1848
TscAI	CASTG	5 cut(s)	862, 983, 1346, 1355, 1820
TseFI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1555
Tsp45I	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 628, 1555
TspDTI	ATGAA	4 cut(s)	185, 779, 1395, 1499
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	2 cut(s)	43, 1662
TspRI	CASTG	5 cut(s)	862, 983, 1346, 1355, 1820
Van91I	CCANNNNNTGG	1 cut(s)	1123
VpaK11BI	GGWCC	4 cut(s)	40, 358, 372, 494
VspI	ATTAAT	1 cut(s)	1848
XapI	RAATTY	3 cut(s)	713, 841, 1042
XceI	RCATGY	2 cut(s)	419, 457
XcmI	CCANNNNNNNNNTGG	2 cut(s)	175, 1485
XmaI	CCCGGG	2 cut(s)	43, 1662
XmnI	GAANNNNTTC	2 cut(s)	1093, 1362
XspI	CTAG	4 cut(s)	747, 987, 1028, 1882
ZraI	GACGTC	3 cut(s)	304, 733, 1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.