Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Forward (+)

48775633 .. 48777974

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG322100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGGCTGAAACCGGTTTCGTCCGGTTTCCGGGTGGCCTGGACCCGGGAGCCGAGGAGTTCAGGCCCAGAAACCCGAACCCGATACCCCTTTTCAGCCCACCACCACCACCGCCTCTGCCACACCAAGTTTACTATCCCTACCCACCGCCACCGCCGCCGCCACCGCCCATGAACGAAGTGGTGGCGGTGCCCTACGTGCCGTCACCCGCCGCGTACGTTAGCGCGGTGACGGTGCAGGCCCCGATCCCGCCTCCGGCCGCGGGGCCGACTCGGGCGGTGCTGCTGAGGCCGGTGCCGTGTGACGTCAGCGAGGTGACGATTCGGCGGGAGTTGGAGGCGTTCGGGCAGGTGAGGTGGGTCCAGATGGAGAGGTCCTGCGACGGGATCGTGACCGTCCATTTCTACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGATTCGGGACCAGCACATGCAACACCAACAACCCACCACCCGCCCTCCTCGTAATTCCGGTCCGTACCACCGGAGCTCCTCCGCCGTGATTGTCAGCCCCGACGTGTGGGCCCACTTCGTGATTCCGGTGCACACCGCAATCCCGGACGGCCACAACCAAGGCACCATCGTGATTTTCAATCTCGACTCGGCGGTGACCACCTCCAGCGTCAGGCAGACGTTCCAAGCTTTTGGTGCTGTGAAGGAATTGAGGGAGACACCTTCGAAGAAGCACCAGAAATTCGTGGAGTTTTTCGATGTCAGACACGCTGCTAGAGCTCTCAAGGAGATGAACGGCAAGGAGATCCATGGCAAACAGATTGTGATCGAGTTCAGTCGCCCGGGAGGCAACAGCTGGAAGAAGCTGAATTCTCTCACCACCACTGCCGTCCCAACTGTCGTCTCTGCCAACGTTGCTTCGCCTGAGTTATATCTGCCCGAACCCTTCTCCGGGCACTCTCGCTTCAATGCAGTCTCGCCGCTAATGTATGGTTCACAAGGCCAGTTTTCGAGTAGGACTAATTCGGGTAGTGGAAATGTTGGTGTGGAGTCTCTAGTGGCGGAGTTGAATTTGGGCGGTGGAATTGAAGAGAGGGAGTCAGTGGGGCATTCCAGAAGGGCTTCTTCGTCGAAGAAGCAAAGCAGCCAGGCAATGGTAACAAGTCCAAGGCAGCTGCAGCAACCGCCACCGAGGAGTAGTAGGGGAAAGAGAGGAAAGCAGCCCAAGAAGTATGATACTCGCTTTCTAATCAAAGAAGATGTCATGGTTGAATCCACAAGCGATTCAAGAACCACTCTGATGATCAAAAACATACCGAACAAATACAGTCAGAAGCTGCTATTGAGTATGCTGGACAACCATTGCATTCACTGCAACGAACAGATTCTTCGCGACGGCGATGAAGACCAGCCTTTGTCCTCCTACGATTTCGTTTATCTCCCCATTGATTTCAATAACAAATGCAATGTAGGTTATGGGTTTGTGAACATGACAAGCCCAGAGGCAACATGGAGGCTTTACAAAGCCTTTCATCACCAAAATTGGGAGGTCTTCAACTCCAGAAAAATCTGTGAAGTCACCTACGCAAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTTCAAGAACTCGAAGTTCCCGAGCGAAATGGATCACTACTTGCCGGTTGTGTTTACGCCGCCCCGGGACGGCAAGCTTCTGACGGATCCACTCCCCATCTTCGGCATCCAACACAAGTCCGGCAGCAACTCCTCCGCCGCCGTTAATCACCCCATTACTCTCCTCCTGCCTCCATCACATCAACATAACCATGATGACATGGATGACTCTGACCACTGTAGTAGTCGTAACGGCGGCGTTCTGGGTATTAATGACGACCAGGACGACGACGACCAAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

626

Amino Acids

69.6

Weight (kDa)

6.96

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	202 - 266	8.3e-11	RNA recognition motif
RRM_2	PF04059	422 - 534	5e-33	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
AatII	GACGTC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	3 cut(s)	187, 292, 599
AccB7I	CCANNNNNTGG	1 cut(s)	1129
AccII	CGCG	4 cut(s)	212, 224, 260, 1368
AclI	AACGTT	1 cut(s)	888
AclWI	GGATC	6 cut(s)	238, 392, 775, 1635, 1676, 1689
AcoI	YGGCCR	2 cut(s)	255, 586
AcsI	RAATTY	3 cut(s)	716, 844, 1045
AcyI	GRCGYC	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	556
AfaI	GTAC	2 cut(s)	215, 503
AflIII	ACRYGT	1 cut(s)	540
AgeI	ACCGGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	541
AjnI	CCWGG	3 cut(s)	36, 1122, 1854
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	9 cut(s)	513, 665, 755, 831, 841, 1150, 1312, 1672, 1878
AluI	AGCT	9 cut(s)	513, 665, 755, 831, 841, 1150, 1312, 1672, 1878
Alw21I	GWGCWC	4 cut(s)	515, 570, 757, 1596
Alw26I	GTCTC	4 cut(s)	686, 883, 955, 1032
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	6 cut(s)	238, 392, 775, 1635, 1676, 1689
AlwNI	CAGNNNCTG	1 cut(s)	1312
Ama87I	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
ApaI	GGGCCC	1 cut(s)	550
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	9 cut(s)	280, 746, 1119, 1147, 1150, 1153, 1195, 1312, 1719
ApoI	RAATTY	3 cut(s)	716, 844, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	1221, 1253
AseI	ATTAAT	1 cut(s)	1845
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	1096, 1359
AspLEI	GCGC	1 cut(s)	224
AsuC2I	CCSGG	9 cut(s)	30, 44, 45, 581, 818, 819, 928, 1660, 1661
AsuHPI	GGTGA	9 cut(s)	195, 238, 325, 361, 643, 844, 1502, 1546, 1736
AsuII	TTCGAA	1 cut(s)	701
AvaI	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
AvaII	GGWCC	5 cut(s)	40, 358, 372, 445, 497
BaeGI	GKGCMC	4 cut(s)	192, 550, 570, 933
BamHI	GGATCC	1 cut(s)	1681
BanI	GGYRCC	3 cut(s)	187, 292, 599
BanII	GRGCYC	3 cut(s)	515, 550, 757
BbsI	GAAGAC	2 cut(s)	1386, 1519
Bbv12I	GWGCWC	4 cut(s)	515, 570, 757, 1596
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	9 cut(s)	267, 733, 1131, 1137, 1159, 1165, 1207, 1299, 1731
BccI	CCATC	4 cut(s)	358, 611, 1700, 1777
BciT130I	CCWGG	3 cut(s)	38, 1124, 1856
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	9 cut(s)	30, 44, 45, 581, 818, 819, 928, 1660, 1661
BcoDI	GTCTC	4 cut(s)	686, 883, 955, 1032
BfaI	CTAG	3 cut(s)	750, 1031, 1879
BfmI	CTRYAG	2 cut(s)	1151, 1813
BfuAI	ACCTGC	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	822
Bme18I	GGWCC	5 cut(s)	40, 358, 372, 445, 497
BmeT110I	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
BmgBI	CACGTC	1 cut(s)	541
BmsI	GCATC	1 cut(s)	1710
BpiI	GAAGAC	2 cut(s)	1386, 1519
BpmI	CTGGAG	2 cut(s)	625, 1519
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	9 cut(s)	30, 44, 45, 581, 818, 819, 928, 1660, 1661
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	303
BsaWI	WCCGGW	5 cut(s)	11, 21, 494, 507, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	466, 496, 497, 527
Bse118I	RCCGGY	3 cut(s)	11, 289, 1639
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	3 cut(s)	1134, 1336, 1447
Bse8I	GATNNNNATC	1 cut(s)	800
BseBI	CCWGG	3 cut(s)	38, 1124, 1856
BseGI	GGATG	2 cut(s)	1701, 1804
BseJI	GATNNNNATC	1 cut(s)	800
BseMI	GCAATG	3 cut(s)	1134, 1336, 1447
BseMII	CTCAG	3 cut(s)	275, 424, 891
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	6 cut(s)	68, 474, 505, 1183, 1717, 1748
BseSI	GKGCMC	4 cut(s)	192, 550, 570, 933
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	9 cut(s)	267, 733, 1131, 1137, 1159, 1165, 1207, 1299, 1731
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	4 cut(s)	212, 224, 260, 1368
Bsh1285I	CGRYCG	1 cut(s)	258
BshNI	GGYRCC	3 cut(s)	187, 292, 599
BshTI	ACCGGT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	4 cut(s)	515, 570, 757, 1596
BsiHKCI	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	3 cut(s)	458, 851, 1676
BsmAI	GTCTC	4 cut(s)	686, 883, 955, 1032
BsmBI	CGTCTC	1 cut(s)	883
BsmFI	GGGAC	3 cut(s)	458, 851, 1676
BsmI	GAATGC	2 cut(s)	1084, 1341
BsoBI	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
Bsp119I	TTCGAA	1 cut(s)	701
Bsp120I	GGGCCC	1 cut(s)	546
Bsp1286I	GDGCHC	7 cut(s)	192, 515, 550, 570, 757, 933, 1596
Bsp143I	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
Bsp19I	CCATGG	1 cut(s)	784
Bsp68I	TCGCGA	1 cut(s)	1368
BspCNI	CTCAG	3 cut(s)	276, 423, 892
BspFNI	CGCG	4 cut(s)	212, 224, 260, 1368
BspMAI	CTGCAG	1 cut(s)	1155
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	6 cut(s)	238, 392, 775, 1635, 1676, 1689
BspT104I	TTCGAA	1 cut(s)	701
BspT107I	GGYRCC	3 cut(s)	187, 292, 599
BsrDI	GCAATG	3 cut(s)	1134, 1336, 1447
BsrFI	RCCGGY	3 cut(s)	11, 289, 1639
BsrI	ACTGG	1 cut(s)	979
BssAI	RCCGGY	3 cut(s)	11, 289, 1639
BssMI	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	4 cut(s)	429, 595, 784, 1142
Bst2UI	CCWGG	3 cut(s)	38, 1124, 1856
Bst4CI	ACNGT	5 cut(s)	232, 394, 874, 1304, 1814
Bst6I	CTCTTC	1 cut(s)	1059
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	1347
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	237, 417, 1670
BstDEI	CTNAG	3 cut(s)	284, 410, 900
BstDSI	CCRYGG	2 cut(s)	258, 784
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	2 cut(s)	1701, 1804
BstFNI	CGCG	4 cut(s)	212, 224, 260, 1368
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	8 cut(s)	246, 387, 409, 783, 804, 1281, 1630, 1684
BstMAI	GTCTC	4 cut(s)	686, 883, 955, 1032
BstMBI	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
BstMCI	CGRYCG	1 cut(s)	258
BstNI	CCWGG	3 cut(s)	38, 1124, 1856
BstNSI	RCATGY	2 cut(s)	419, 457
BstPI	GGTNACC	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	1151, 1813
BstSLI	GKGCMC	4 cut(s)	192, 550, 570, 933
BstUI	CGCG	4 cut(s)	212, 224, 260, 1368
BstV1I	GCAGC	9 cut(s)	267, 733, 1131, 1137, 1159, 1165, 1207, 1299, 1731
BstV2I	GAAGAC	2 cut(s)	1386, 1519
BstX2I	RGATCY	2 cut(s)	780, 1681
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	2 cut(s)	780, 1681
BstZI	CGGCCG	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	258, 784
BtgZI	GCGATG	1 cut(s)	1389
BtrI	CACGTC	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	1701, 1804
BtsI	GCAGTG	2 cut(s)	858, 1345
BtsIMutI	CAGTG	4 cut(s)	858, 1083, 1345, 1810
BtuMI	TCGCGA	1 cut(s)	1368
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	237, 417, 1670
CaiI	CAGNNNCTG	1 cut(s)	1312
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	3 cut(s)	11, 289, 1639
Cfr42I	CCGCGG	1 cut(s)	261
Cfr9I	CCCGGG	3 cut(s)	43, 817, 1659
CpoI	CGGWCCG	1 cut(s)	497
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	214, 502
CspAI	ACCGGT	1 cut(s)	11
CspI	CGGWCCG	1 cut(s)	497
CviAII	CATG	9 cut(s)	169, 416, 454, 785, 1240, 1465, 1485, 1787, 1795
CviQI	GTAC	2 cut(s)	214, 502
DdeI	CTNAG	3 cut(s)	284, 410, 900
DpnI	GATC	8 cut(s)	245, 386, 408, 782, 803, 1280, 1629, 1683
DpnII	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
DraIII	CACNNNGTG	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	255, 586
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	4 cut(s)	449, 508, 1052, 1720
Ecl136II	GAGCTC	2 cut(s)	513, 755
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	4 cut(s)	429, 595, 784, 1142
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	3 cut(s)	515, 550, 757
Eco47I	GGWCC	5 cut(s)	40, 358, 372, 445, 497
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	513, 755
Eco88I	CYCGRG	5 cut(s)	43, 270, 817, 1615, 1659
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	2 cut(s)	513, 755
EcoO109I	RGGNCCY	2 cut(s)	238, 372
EcoO65I	GGTNACC	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	3 cut(s)	36, 1122, 1854
EcoT14I	CCWWGG	4 cut(s)	429, 595, 784, 1142
EcoT38I	GRGCYC	3 cut(s)	515, 550, 757
ErhI	CCWWGG	4 cut(s)	429, 595, 784, 1142
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	9 cut(s)	172, 419, 457, 788, 1243, 1468, 1488, 1790, 1798
FalI	AAGNNNNNCTT	4 cut(s)	1084, 1116, 1580, 1612
FaqI	GGGAC	3 cut(s)	458, 851, 1676
FatI	CATG	9 cut(s)	168, 415, 453, 784, 1239, 1464, 1484, 1786, 1794
FauI	CCCGC	5 cut(s)	214, 253, 255, 318, 485
FbaI	TGATCA	1 cut(s)	1278
FokI	GGATG	2 cut(s)	1688, 1811
FriOI	GRGCYC	3 cut(s)	515, 550, 757
FspBI	CTAG	3 cut(s)	750, 1031, 1879
GlaI	GCGC	1 cut(s)	223
GsuI	CTGGAG	2 cut(s)	625, 1519
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	9 cut(s)	172, 419, 457, 788, 1243, 1468, 1488, 1790, 1798
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	2 cut(s)	663, 1670
HphI	GGTGA	9 cut(s)	195, 238, 325, 361, 643, 844, 1502, 1546, 1736
Hpy166II	GTNNAC	5 cut(s)	130, 568, 971, 1462, 1650
Hpy188I	TCNGA	5 cut(s)	740, 1275, 1308, 1677, 1807
Hpy8I	GTNNAC	5 cut(s)	130, 568, 971, 1462, 1650
Hpy99I	CGWCG	6 cut(s)	383, 542, 1108, 1373, 1865, 1868
HpyAV	CCTTC	6 cut(s)	418, 673, 708, 931, 1086, 1582
HpyCH4III	ACNGT	5 cut(s)	232, 394, 874, 1304, 1814
HpyCH4IV	ACGT	6 cut(s)	195, 216, 303, 540, 656, 888
HpyCH4V	TGCA	9 cut(s)	235, 419, 457, 568, 947, 1153, 1341, 1350, 1440
HpyF3I	CTNAG	3 cut(s)	284, 410, 900
HpySE526I	ACGT	6 cut(s)	195, 216, 303, 540, 656, 888
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	9 cut(s)	172, 419, 457, 788, 1243, 1468, 1488, 1790, 1798
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	1278
KspI	CCGCGG	1 cut(s)	261
Kzo9I	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
LmnI	GCTCC	4 cut(s)	47, 510, 518, 1591
Lsp1109I	GCAGC	9 cut(s)	267, 733, 1131, 1137, 1159, 1165, 1207, 1299, 1731
LweI	GCATC	1 cut(s)	1710
MaeI	CTAG	3 cut(s)	750, 1031, 1879
MaeII	ACGT	6 cut(s)	195, 216, 303, 540, 656, 888
MaeIII	GTNAC	9 cut(s)	201, 226, 299, 313, 388, 631, 1132, 1552, 1823
MalI	GATC	8 cut(s)	245, 386, 408, 782, 803, 1280, 1629, 1683
MboI	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
MflI	RGATCY	2 cut(s)	780, 1681
MhlI	GDGCHC	7 cut(s)	192, 515, 550, 570, 757, 933, 1596
MluCI	AATT	8 cut(s)	490, 683, 716, 844, 997, 1045, 1059, 1516
MlyI	GAGTC	5 cut(s)	262, 617, 1034, 1082, 1796
MmeI	TCCRAC	2 cut(s)	312, 1729
MroXI	GAANNNNTTC	2 cut(s)	1096, 1359
MseI	TTAA	2 cut(s)	1740, 1845
MslI	CAYNNNNRTG	3 cut(s)	605, 1274, 1785
MspA1I	CMGCKG	3 cut(s)	260, 831, 1150
Mva1269I	GAATGC	2 cut(s)	1084, 1341
MvaI	CCWGG	3 cut(s)	38, 1124, 1856
MvnI	CGCG	4 cut(s)	212, 224, 260, 1368
NciI	CCSGG	9 cut(s)	30, 44, 45, 581, 818, 819, 928, 1660, 1661
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
NlaIII	CATG	9 cut(s)	172, 419, 457, 788, 1243, 1468, 1488, 1790, 1798
NmeAIII	GCCGAG	2 cut(s)	76, 605
NmuCI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 631, 1552
NruI	TCGCGA	1 cut(s)	1368
NspI	RCATGY	2 cut(s)	419, 457
NspV	TTCGAA	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	2 cut(s)	1613, 1857
PctI	GAATGC	2 cut(s)	1084, 1341
PdmI	GAANNNNTTC	2 cut(s)	1096, 1359
PfeI	GAWTC	6 cut(s)	319, 439, 559, 1247, 1259, 1360
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	1129
PfoI	TCCNGGA	1 cut(s)	579
PinAI	ACCGGT	1 cut(s)	11
PleI	GAGTC	5 cut(s)	262, 617, 1033, 1081, 1796
PpsI	GAGTC	5 cut(s)	262, 617, 1033, 1081, 1796
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	1845
Psp124BI	GAGCTC	2 cut(s)	515, 757
Psp1406I	AACGTT	1 cut(s)	888
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	36, 1122, 1854
PspEI	GGTNACC	1 cut(s)	631
PspGI	CCWGG	3 cut(s)	36, 1122, 1854
PspLI	CGTACG	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	546
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	1155
PstNI	CAGNNNCTG	1 cut(s)	1312
PsuI	RGATCY	2 cut(s)	780, 1681
PvuII	CAGCTG	2 cut(s)	831, 1150
RruI	TCGCGA	1 cut(s)	1368
RsaI	GTAC	2 cut(s)	215, 503
RsaNI	GTAC	2 cut(s)	214, 502
RseI	CAYNNNNRTG	3 cut(s)	605, 1274, 1785
Rsr2I	CGGWCCG	1 cut(s)	497
RsrII	CGGWCCG	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	515, 757
SacII	CCGCGG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	1740, 1845
Sau3AI	GATC	8 cut(s)	243, 384, 406, 780, 801, 1278, 1627, 1681
SchI	GAGTC	5 cut(s)	262, 617, 1034, 1082, 1796
SduI	GDGCHC	7 cut(s)	192, 515, 550, 570, 757, 933, 1596
SfaNI	GCATC	1 cut(s)	1710
SfcI	CTRYAG	2 cut(s)	1151, 1813
Sfr303I	CCGCGG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	701
SgrBI	CCGCGG	1 cut(s)	261
SinI	GGWCC	5 cut(s)	40, 358, 372, 445, 497
SmaI	CCCGGG	3 cut(s)	45, 819, 1661
SmiMI	CAYNNNNRTG	3 cut(s)	605, 1274, 1785
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	8 cut(s)	490, 683, 716, 844, 997, 1045, 1059, 1516
SseBI	AGGCCT	1 cut(s)	428
SspMI	CTAG	3 cut(s)	750, 1031, 1879
SstI	GAGCTC	2 cut(s)	515, 757
StuI	AGGCCT	1 cut(s)	428
StyI	CCWWGG	4 cut(s)	429, 595, 784, 1142
TaaI	ACNGT	5 cut(s)	232, 394, 874, 1304, 1814
TaiI	ACGT	6 cut(s)	198, 219, 306, 543, 659, 891
TaqI	TCGA	7 cut(s)	621, 701, 732, 804, 986, 1106, 1607
TasI	AATT	8 cut(s)	490, 683, 716, 844, 997, 1045, 1059, 1516
TauI	GCSGC	8 cut(s)	157, 160, 212, 260, 958, 1657, 1736, 1833
TfiI	GAWTC	6 cut(s)	319, 439, 559, 1247, 1259, 1360
Tru1I	TTAA	2 cut(s)	1740, 1845
Tru9I	TTAA	2 cut(s)	1740, 1845
TscAI	CASTG	4 cut(s)	865, 1083, 1352, 1817
TseFI	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 631, 1552
TseI	GCWGC	9 cut(s)	280, 746, 1119, 1147, 1150, 1153, 1195, 1312, 1719
Tsp45I	GTSAC	7 cut(s)	201, 226, 299, 313, 388, 631, 1552
TspDTI	ATGAA	4 cut(s)	185, 782, 1392, 1496
TspGWI	ACGGA	2 cut(s)	489, 1694
TspMI	CCCGGG	3 cut(s)	43, 817, 1659
TspRI	CASTG	4 cut(s)	865, 1083, 1352, 1817
Van91I	CCANNNNNTGG	1 cut(s)	1129
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	5 cut(s)	40, 358, 372, 445, 497
VspI	ATTAAT	1 cut(s)	1845
XapI	RAATTY	3 cut(s)	716, 844, 1045
XceI	RCATGY	2 cut(s)	419, 457
XcmI	CCANNNNNNNNNTGG	2 cut(s)	175, 1482
XmaI	CCCGGG	3 cut(s)	43, 817, 1659
XmnI	GAANNNNTTC	2 cut(s)	1096, 1359
XspI	CTAG	3 cut(s)	750, 1031, 1879
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.