Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038130.1

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 723

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgctggacaaccactgcattcactgcaacgaacagattcttcgcgacggcgatgaagaccagcctttgtcctcctacgatttcgtttatctccccattgatttcaataacaaatgcaatgtaggttatgggtttgtgaacatgacaagcccagaggcaacatggaggctttacaaagcctttcatcaccaaaattgggaggtcttcaactccagaaagatctgtgaagtcacctacgcaagaggattggaagcgttgaaggagcacttcaagaactccaagttcccgagcgagatggatcactacttgccggttgtgtttacgccgccccgggatggcaagcttctgacggatccactccccatcttcggcatccaacacaagtccggcagcaactcctccgccgccgttaatcaccccattactctcctcctgcctccatcacatcaacataaccatgatgacatggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

5.82

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	326, 402, 405
AclWI	GGATC	3 cut(s)	306, 347, 360
AfiI	CCNNNNNNNGG	3 cut(s)	196, 335, 368
AgsI	TTSAA	4 cut(s)	106, 208, 259, 271
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	306, 347, 360
Ama87I	CYCGRG	2 cut(s)	286, 330
ApeKI	GCWGC	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuC2I	CCSGG	2 cut(s)	331, 332
AsuHPI	GGTGA	3 cut(s)	179, 223, 407
AvaI	CYCGRG	2 cut(s)	286, 330
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	2 cut(s)	63, 196
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	4 cut(s)	289, 329, 371, 448
BceAI	ACGGC	2 cut(s)	64, 392
BcnI	CCSGG	2 cut(s)	331, 332
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	3 cut(s)	326, 391, 405
BlsI	GCNGC	3 cut(s)	327, 392, 406
Bme1390I	CCNGG	2 cut(s)	331, 332
BmeT110I	CYCGRG	2 cut(s)	286, 330
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	331, 332
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	63, 196
BpmI	CTGGAG	1 cut(s)	196
BpuMI	CCSGG	2 cut(s)	331, 332
BsaJI	CCNNGG	2 cut(s)	329, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 335, 368
Bse118I	RCCGGY	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	329, 330
BseGI	GGATG	2 cut(s)	340, 372
BseLI	CCNNNNNNNGG	3 cut(s)	196, 335, 368
BseMI	GCAATG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	388, 419
BseXI	GCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	286, 330
BsiSI	CCGG	3 cut(s)	311, 331, 387
BslI	CCNNNNNNNGG	3 cut(s)	196, 335, 368
BsmI	GAATGC	1 cut(s)	18
BsoBI	CYCGRG	2 cut(s)	286, 330
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	219, 298, 352
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	3 cut(s)	326, 402, 405
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	306, 347, 360
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	329, 330
BssMI	GATC	3 cut(s)	219, 298, 352
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	340, 372
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	222, 301, 355
BstMBI	GATC	3 cut(s)	219, 298, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	329, 330
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	2 cut(s)	63, 196
BstX2I	RGATCY	2 cut(s)	219, 352
BstYI	RGATCY	2 cut(s)	219, 352
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	340, 372
BtsI	GCAGTG	2 cut(s)	13, 22
BtsIMutI	CAGTG	2 cut(s)	13, 22
BtuMI	TCGCGA	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	310
Cfr9I	CCCGGG	1 cut(s)	330
CviAII	CATG	4 cut(s)	142, 162, 458, 466
CviJI	RGCY	5 cut(s)	64, 150, 169, 179, 343
CviKI_1	RGCY	5 cut(s)	64, 150, 169, 179, 343
DpnI	GATC	3 cut(s)	221, 300, 354
DpnII	GATC	3 cut(s)	219, 298, 352
EciI	GGCGGA	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	286, 330
FaeI	CATG	4 cut(s)	145, 165, 461, 469
FaiI	YATR	6 cut(s)	129, 143, 163, 453, 459, 467
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	141, 161, 457, 465
Fnu4HI	GCNGC	3 cut(s)	326, 391, 405
FokI	GGATG	2 cut(s)	347, 359
Fsp4HI	GCNGC	3 cut(s)	326, 391, 405
GluI	GCNGC	3 cut(s)	326, 391, 405
GsuI	CTGGAG	1 cut(s)	196
HapII	CCGG	3 cut(s)	311, 331, 387
Hin1II	CATG	4 cut(s)	145, 165, 461, 469
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	3 cut(s)	311, 331, 387
HphI	GGTGA	3 cut(s)	179, 223, 407
Hpy166II	GTNNAC	2 cut(s)	139, 321
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	44, 213, 271, 286
Hpy8I	GTNNAC	2 cut(s)	139, 321
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	18, 27, 117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	145, 165, 461, 469
Kzo9I	GATC	3 cut(s)	219, 298, 352
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	74, 165, 226, 324, 344, 400, 446
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	221, 300, 354
MboI	GATC	3 cut(s)	219, 298, 352
MboII	GAAGA	4 cut(s)	32, 68, 196, 358
MflI	RGATCY	2 cut(s)	219, 352
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	82, 148, 159, 193, 236, 409, 440, 447
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	3 cut(s)	311, 331, 387
MspR9I	CCNGG	2 cut(s)	331, 332
Mva1269I	GAATGC	1 cut(s)	18
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	331, 332
NdeII	GATC	3 cut(s)	219, 298, 352
NlaIII	CATG	4 cut(s)	145, 165, 461, 469
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	327, 392, 406
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	219, 352
RruI	TCGCGA	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	326, 391, 405
Sau3AI	GATC	3 cut(s)	219, 298, 352
ScrFI	CCNGG	2 cut(s)	331, 332
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	4 cut(s)	127, 204, 236, 345
SfaNI	GCATC	1 cut(s)	381
SmaI	CCCGGG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	3 cut(s)	326, 402, 405
StyD4I	CCNGG	2 cut(s)	329, 330
TasI	AATT	1 cut(s)	193
TauI	GCSGC	2 cut(s)	328, 407
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	20, 29
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	69, 173
TspGWI	ACGGA	1 cut(s)	365
TspMI	CCCGGG	1 cut(s)	330
TspRI	CASTG	2 cut(s)	20, 29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmaI	CCCGGG	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.