Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

4639484 .. 4640389

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1056900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTGACTTATTGTTCTTTAGGCACTAGCATGTCTTATCAAACATCGATGGTGGCTGAGCTCCGGCGAGCCACGAAAGATTTCTCCCCGGAAATGATCATCGGAGGCGGGAGCTTCGATCTCGTCTACAGGGGCCTACTTTCCAATGGCATGAGTGTAGCTGTAAAGAAGTGTAACGCCGTAGGGTTCCCTGACGTGCGAGCAATTCGCGCCGAAGAAGAAACACTTGGTAAGGTACAGCACCCACATGTTATCAAGCTTTTGGGGCACTGCCAGTGGAACTCAACTCACCTTCTGTTTTACGAGTACTACGCCAATAGCGATCTTTACAGTTGGCTGCACGAAGAATCACGGCGTTGGGCTGTCTCATCGTGGGAGACTAGGTTTCGGATTGTTAAAGGTGTCGCCGACGGCCTTGCCTATCTGCATGGCTTGGACAACCCAATTATTCACAGGGATATCAAGTCGAAAAATGTGATACTAGACTCCAACTTTGAGCCCCACATCGCTCATTTTGGGCTCGCTAGATGGATGGAGGCGTCACATACGCATGTGACGACGGAGCCAGATGGCTCTGTAGGATACATGCCTCCTGAGTACATGGCAGGATCTAACAGGGCCACAACAAAGGGTGATGTCTACAGCTTTGGCATTTTGATGTTGGAGATTGCGACCAGGAGGCGGCCGAGTAAGTTGACAACATTTGACGCCCAAGAGATGGACGTGGTGGAATGGGTTAAAATGATGGTGGCTAATTACATTGTTGATCCAAGTAACCCCATCCTATTGGTTGCAGCAGACCATTTATCGCAGTACTTTAAGATCGCTTGGTATTGCGTCATAAATTTACCACAATATAGGCCTGACATGAAGTGGGTTGTTGAAAGATTAAATGAAATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

302

Amino Acids

34.38

Weight (kDa)

6.49

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 244	3e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 296	8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccI	GTMKAC	2 cut(s)	126, 639
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	108, 682
AclWI	GGATC	2 cut(s)	616, 761
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	2 cut(s)	844, 897
AcyI	GRCGYC	2 cut(s)	539, 708
AfaI	GTAC	4 cut(s)	237, 308, 599, 815
AfiI	CCNNNNNNNGG	2 cut(s)	681, 718
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	884
AjiI	CACGTC	2 cut(s)	196, 724
AjnI	CCWGG	1 cut(s)	674
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	61, 114, 161, 259, 645
AluI	AGCT	5 cut(s)	61, 114, 161, 259, 645
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	370, 371
AlwI	GGATC	2 cut(s)	616, 761
AoxI	GGCC	5 cut(s)	133, 412, 618, 683, 860
ApeKI	GCWGC	2 cut(s)	337, 794
ApoI	RAATTY	2 cut(s)	844, 897
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	133, 618
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	281, 644
BaeGI	GKGCMC	1 cut(s)	270
BanII	GRGCYC	3 cut(s)	63, 501, 522
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	324, 806
BccI	CCATC	7 cut(s)	43, 522, 526, 563, 712, 739, 788
BceAI	ACGGC	3 cut(s)	164, 368, 427
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	676
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	370, 371
BfaI	CTAG	4 cut(s)	27, 381, 482, 525
BfmI	CTRYAG	3 cut(s)	127, 576, 640
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	3 cut(s)	338, 683, 795
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	3 cut(s)	339, 684, 796
BmcAI	AGTACT	2 cut(s)	308, 815
Bme1390I	CCNGG	2 cut(s)	89, 676
BmgBI	CACGTC	2 cut(s)	196, 724
BmgT120I	GGNCC	2 cut(s)	133, 618
BmiI	GGNNCC	3 cut(s)	134, 188, 564
BmrFI	CCNGG	2 cut(s)	89, 676
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	539, 708
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	681, 718
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	676
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	537, 780
BseLI	CCNNNNNNNGG	2 cut(s)	681, 718
BseMII	CTCAG	2 cut(s)	48, 585
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	270
BseX3I	CGGCCG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	324, 806
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	686
BshFI	GGCC	5 cut(s)	135, 414, 620, 685, 862
BshVI	ATCGAT	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	64, 89
BslI	CCNNNNNNNGG	2 cut(s)	681, 718
BsmAI	GTCTC	2 cut(s)	370, 371
BsnI	GGCC	5 cut(s)	135, 414, 620, 685, 862
Bsp1286I	GDGCHC	4 cut(s)	63, 270, 501, 522
Bsp143I	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
Bsp1720I	GCTNAGC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	108, 682
BspANI	GGCC	5 cut(s)	135, 414, 620, 685, 862
BspCNI	CTCAG	2 cut(s)	49, 586
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	134, 188, 564
BspPI	GGATC	2 cut(s)	616, 761
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
BssNI	GRCGYC	2 cut(s)	539, 708
Bst2UI	CCWGG	1 cut(s)	676
Bst4CI	ACNGT	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	539, 708
BstC8I	GCNNGC	3 cut(s)	69, 201, 522
BstDEI	CTNAG	2 cut(s)	57, 594
BstF5I	GGATG	2 cut(s)	537, 780
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	6 cut(s)	99, 121, 325, 611, 769, 825
BstMAI	GTCTC	2 cut(s)	370, 371
BstMBI	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
BstMCI	CGRYCG	1 cut(s)	686
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 265
BstNI	CCWGG	1 cut(s)	676
BstNSI	RCATGY	4 cut(s)	34, 251, 554, 589
BstSCI	CCNGG	2 cut(s)	87, 674
BstSFI	CTRYAG	3 cut(s)	127, 576, 640
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	324, 806
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	608
BstZI	CGGCCG	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	135, 414, 620, 685, 862
BsuTUI	ATCGAT	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	490
BtrI	CACGTC	2 cut(s)	196, 724
BtsCI	GGATG	2 cut(s)	537, 780
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 281
Cac8I	GCNNGC	3 cut(s)	69, 201, 522
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	133, 618
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	3 cut(s)	528, 716, 826
Csp6I	GTAC	4 cut(s)	236, 307, 598, 814
CviAII	CATG	8 cut(s)	31, 151, 248, 428, 551, 586, 601, 868
CviQI	GTAC	4 cut(s)	236, 307, 598, 814
DdeI	CTNAG	2 cut(s)	57, 594
DpnI	GATC	6 cut(s)	98, 120, 324, 610, 768, 824
DpnII	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
EaeI	YGGCCR	1 cut(s)	683
EagI	CGGCCG	1 cut(s)	683
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	683
Eco147I	AGGCCT	1 cut(s)	862
Eco24I	GRGCYC	3 cut(s)	63, 501, 522
Eco32I	GATATC	1 cut(s)	460
Eco52I	CGGCCG	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	460
EcoT38I	GRGCYC	3 cut(s)	63, 501, 522
FaeI	CATG	8 cut(s)	34, 154, 251, 431, 554, 589, 604, 871
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	8 cut(s)	30, 150, 247, 427, 550, 585, 600, 867
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	2 cut(s)	126, 639
Fnu4HI	GCNGC	3 cut(s)	338, 683, 795
FokI	GGATG	2 cut(s)	544, 767
FriOI	GRGCYC	3 cut(s)	63, 501, 522
Fsp4HI	GCNGC	3 cut(s)	338, 683, 795
FspBI	CTAG	4 cut(s)	27, 381, 482, 525
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	338, 683, 795
HaeIII	GGCC	5 cut(s)	135, 414, 620, 685, 862
HapII	CCGG	2 cut(s)	64, 89
HgaI	GACGC	3 cut(s)	528, 716, 826
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	539, 708
Hin1II	CATG	8 cut(s)	34, 154, 251, 431, 554, 589, 604, 871
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	2 cut(s)	6, 696
HindII	GTYRAC	2 cut(s)	6, 696
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	2 cut(s)	347, 485
HpaII	CCGG	2 cut(s)	64, 89
HphI	GGTGA	2 cut(s)	281, 644
Hpy166II	GTNNAC	4 cut(s)	6, 127, 640, 696
Hpy188I	TCNGA	2 cut(s)	104, 390
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	4 cut(s)	6, 127, 640, 696
Hpy99I	CGWCG	2 cut(s)	413, 562
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	2 cut(s)	195, 723
HpyCH4V	TGCA	3 cut(s)	340, 427, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 265
HpyF3I	CTNAG	2 cut(s)	57, 594
HpySE526I	ACGT	2 cut(s)	195, 723
Hsp92I	GRCGYC	2 cut(s)	539, 708
Hsp92II	CATG	8 cut(s)	34, 154, 251, 431, 554, 589, 604, 871
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
LmnI	GCTCC	3 cut(s)	66, 111, 562
Lsp1109I	GCAGC	2 cut(s)	324, 806
MaeI	CTAG	4 cut(s)	27, 381, 482, 525
MaeII	ACGT	2 cut(s)	195, 723
MaeIII	GTNAC	4 cut(s)	173, 540, 553, 773
MalI	GATC	6 cut(s)	98, 120, 324, 610, 768, 824
MboI	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
MboII	GAAGA	3 cut(s)	227, 230, 356
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	4 cut(s)	63, 270, 501, 522
MluCI	AATT	5 cut(s)	204, 444, 754, 844, 897
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	513, 642
MnlI	CCTC	4 cut(s)	98, 529, 600, 672
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	4 cut(s)	396, 738, 819, 890
MslI	CAYNNNNRTG	4 cut(s)	29, 246, 549, 656
MspI	CCGG	2 cut(s)	64, 89
MspR9I	CCNGG	2 cut(s)	89, 676
MvaI	CCWGG	1 cut(s)	676
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	209, 265
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
NlaIII	CATG	8 cut(s)	34, 154, 251, 431, 554, 589, 604, 871
NlaIV	GGNNCC	3 cut(s)	134, 188, 564
NmeAIII	GCCGAG	1 cut(s)	711
NmuCI	GTSAC	2 cut(s)	540, 553
NspI	RCATGY	4 cut(s)	34, 251, 554, 589
PceI	AGGCCT	1 cut(s)	862
PciI	ACATGT	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 554
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	3 cut(s)	339, 684, 796
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	3 cut(s)	134, 188, 564
PspPI	GGNCC	2 cut(s)	133, 618
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	4 cut(s)	237, 308, 599, 815
RsaNI	GTAC	4 cut(s)	236, 307, 598, 814
RseI	CAYNNNNRTG	4 cut(s)	29, 246, 549, 656
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	396, 738, 819, 890
SatI	GCNGC	3 cut(s)	338, 683, 795
Sau3AI	GATC	6 cut(s)	96, 118, 322, 608, 766, 822
Sau96I	GGNCC	2 cut(s)	133, 618
ScaI	AGTACT	2 cut(s)	308, 815
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	89, 676
SduI	GDGCHC	4 cut(s)	63, 270, 501, 522
SfcI	CTRYAG	3 cut(s)	127, 576, 640
SmiMI	CAYNNNNRTG	4 cut(s)	29, 246, 549, 656
Sse9I	AATT	5 cut(s)	204, 444, 754, 844, 897
SseBI	AGGCCT	1 cut(s)	862
SsiI	CCGC	2 cut(s)	108, 682
SspMI	CTAG	4 cut(s)	27, 381, 482, 525
SstI	GAGCTC	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	862
StyD4I	CCNGG	2 cut(s)	87, 674
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	2 cut(s)	198, 726
TaqI	TCGA	3 cut(s)	47, 117, 467
TasI	AATT	5 cut(s)	204, 444, 754, 844, 897
TatI	WGTACW	3 cut(s)	306, 597, 813
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	4 cut(s)	396, 738, 819, 890
Tru9I	TTAA	4 cut(s)	396, 738, 819, 890
TscAI	CASTG	2 cut(s)	275, 281
TseFI	GTSAC	2 cut(s)	540, 553
TseI	GCWGC	2 cut(s)	337, 794
Tsp45I	GTSAC	2 cut(s)	540, 553
TspDTI	ATGAA	2 cut(s)	884, 890
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	2 cut(s)	275, 281
Van91I	CCANNNNNTGG	1 cut(s)	718
XapI	RAATTY	2 cut(s)	844, 897
XceI	RCATGY	4 cut(s)	34, 251, 554, 589
XmiI	GTMKAC	2 cut(s)	126, 639
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	4 cut(s)	27, 381, 482, 525
ZrmI	AGTACT	2 cut(s)	308, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.