Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

22461716 .. 22465991

Gene Structure 4276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCGTCTCAGTTCTCCATGGCTAAGCTGCTAAGGGCCACAAATAACTTCTCTTCAGACATGATCATCGGCTATGGCGACTGCTTCCTGCTTTACAAGGCTCAACTCTCCAACGGTCTCACCGTCGCCATCAAGAAGCTTGACCCGAGAGAGTTCCCGGGGTTTCGTGAGTTTCGGGCTGAAGTCGAAACGCTTGGGAAGCTTCGTCACCCAAATATTGTCAAGCTCTTGGGGTACAGCTCGGTTGGACATTTTGTGTATGAGTACATCGAGAGAGGCGATCTTCATTGTTTGTTGCATGACTCTGAAGTTCGAGATAACTCGTTACCATGGGAAACCAGGTTTCAGATTGTCAGAGGTGTGGCTGATGGGCTAGCATATTTACATGGGTTGGAAACCCCCATTGTTCATAGGGACATTAGAGCCAAAAATGTGTTACTTGACTTGGAGTTTCAGCCACATATTACTAGTTTTGGGCTCGCTAGAAGGATTGAATCACAGCATTCGCATGTGTCAACTTGTACCGATGGCGCCATAGCATACATGCCTCCGGAGTACCTAGTCGGCTGCAATGTGGCTACCTTGAAAGGGGATGTGTTTAGTTTTGGCGTTCTGATGCTGGAAATCGCAACGGGGAGATGCCCAAGCCTACTCAACGAGCTTAATGGCAAGAAAAGGGGGTTAGTGGAATGGGCCAAGCGAATGATCACAAGTTCCACATTTGAAAAGCTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

246

Amino Acids

27.72

Weight (kDa)

8.24

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 219	1.3e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 215	9.6e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccIII	TCCGGA	1 cut(s)	550
AcuI	CTGAAG	3 cut(s)	39, 201, 327
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	4 cut(s)	236, 266, 523, 557
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	494, 586, 725
AhlI	ACTAGT	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	7 cut(s)	28, 139, 202, 226, 240, 661, 730
AluI	AGCT	7 cut(s)	28, 139, 202, 226, 240, 661, 730
Alw26I	GTCTC	2 cut(s)	12, 122
Ama87I	CYCGRG	2 cut(s)	145, 157
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	36, 693
ApeKI	GCWGC	2 cut(s)	28, 567
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	36, 693
AsuC2I	CCSGG	2 cut(s)	158, 159
AsuHPI	GGTGA	2 cut(s)	112, 200
AsuNHI	GCTAGC	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	145, 157
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	15, 554
BccI	CCATC	3 cut(s)	137, 362, 521
BciT130I	CCWGG	1 cut(s)	340
BclI	TGATCA	2 cut(s)	63, 705
BcnI	CCSGG	2 cut(s)	158, 159
BcoDI	GTCTC	2 cut(s)	12, 122
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	4 cut(s)	374, 468, 483, 560
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	2 cut(s)	29, 568
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	30, 569
Bme1390I	CCNGG	3 cut(s)	158, 159, 340
BmeT110I	CYCGRG	2 cut(s)	145, 157
BmgT120I	GGNCC	2 cut(s)	36, 693
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	3 cut(s)	158, 159, 340
BmsI	GCATC	2 cut(s)	606, 629
BmtI	GCTAGC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	158, 159
BsaHI	GRCGYC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	18, 157, 158, 329
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	577
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	4 cut(s)	18, 157, 158, 329
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	15, 554
BshFI	GGCC	2 cut(s)	38, 695
BshNI	GGYRCC	1 cut(s)	530
BsiHKCI	CYCGRG	2 cut(s)	145, 157
BsiSI	CCGG	2 cut(s)	158, 551
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	2 cut(s)	12, 122
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	38, 695
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	145, 157
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	63, 280, 705
Bsp1720I	GCTNAGC	1 cut(s)	24
Bsp19I	CCATGG	2 cut(s)	18, 329
BspANI	GGCC	2 cut(s)	38, 695
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	532
BspOI	GCTAGC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	577
BssECI	CCNNGG	4 cut(s)	18, 157, 158, 329
BssMI	GATC	3 cut(s)	63, 280, 705
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	18, 329
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	116, 124
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	375, 480
BstDEI	CTNAG	3 cut(s)	9, 24, 32
BstDSI	CCRYGG	2 cut(s)	18, 329
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	3 cut(s)	66, 283, 708
BstMAI	GTCTC	2 cut(s)	12, 122
BstMBI	GATC	3 cut(s)	63, 280, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	2 cut(s)	512, 547
BstSCI	CCNGG	3 cut(s)	156, 157, 338
BstV1I	GCAGC	2 cut(s)	15, 554
BsuRI	GGCC	2 cut(s)	38, 695
BtgI	CCRYGG	2 cut(s)	18, 329
BtsCI	GGATG	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	375, 480
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	36, 693
Cfr9I	CCCGGG	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	235, 265, 522, 556
CviAII	CATG	7 cut(s)	19, 61, 299, 330, 386, 509, 544
CviQI	GTAC	4 cut(s)	235, 265, 522, 556
DdeI	CTNAG	3 cut(s)	9, 24, 32
DinI	GGCGCC	1 cut(s)	532
DpnI	GATC	3 cut(s)	65, 282, 707
DpnII	GATC	3 cut(s)	63, 280, 705
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	18, 329
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	39, 201, 327
Eco88I	CYCGRG	2 cut(s)	145, 157
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	18, 329
EcoT38I	GRGCYC	1 cut(s)	480
EgeI	GGCGCC	1 cut(s)	532
EheI	GGCGCC	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	18, 329
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	7 cut(s)	22, 64, 302, 333, 389, 512, 547
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	7 cut(s)	18, 60, 298, 329, 385, 508, 543
FbaI	TGATCA	2 cut(s)	63, 705
Fnu4HI	GCNGC	2 cut(s)	29, 568
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	29, 568
FspBI	CTAG	4 cut(s)	374, 468, 483, 560
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	29, 568
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	38, 695
HapII	CCGG	2 cut(s)	158, 551
HhaI	GCGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	7 cut(s)	22, 64, 302, 333, 389, 512, 547
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	137, 200
HinfI	GANTC	2 cut(s)	302, 494
HpaII	CCGG	2 cut(s)	158, 551
HphI	GGTGA	2 cut(s)	112, 200
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	5 cut(s)	58, 307, 348, 356, 615
Hpy188III	TCNNGA	5 cut(s)	133, 167, 271, 314, 551
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	2 cut(s)	116, 124
HpyCH4V	TGCA	2 cut(s)	298, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	9, 24, 32
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	7 cut(s)	22, 64, 302, 333, 389, 512, 547
HspAI	GCGC	1 cut(s)	531
KasI	GGCGCC	1 cut(s)	530
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	63, 705
Kzo9I	GATC	3 cut(s)	63, 280, 705
LpnPI	CCDG	6 cut(s)	101, 171, 325, 352, 564, 605
Lsp1109I	GCAGC	2 cut(s)	15, 554
LweI	GCATC	2 cut(s)	606, 629
MabI	ACCWGGT	1 cut(s)	338
MaeI	CTAG	4 cut(s)	374, 468, 483, 560
MaeIII	GTNAC	3 cut(s)	206, 324, 435
MalI	GATC	3 cut(s)	65, 282, 707
MboI	GATC	3 cut(s)	63, 280, 705
MboII	GAAGA	2 cut(s)	45, 275
MhlI	GDGCHC	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	3 cut(s)	135, 226, 372
MnlI	CCTC	3 cut(s)	269, 350, 558
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	158, 551
MspR9I	CCNGG	3 cut(s)	158, 159, 340
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	531
NciI	CCSGG	2 cut(s)	158, 159
NcoI	CCATGG	2 cut(s)	18, 329
NdeII	GATC	3 cut(s)	63, 280, 705
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	7 cut(s)	22, 64, 302, 333, 389, 512, 547
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	2 cut(s)	512, 547
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 120, 276
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	30, 569
PleI	GAGTC	1 cut(s)	296
PluTI	GGCGCC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	36, 693
RsaI	GTAC	4 cut(s)	236, 266, 523, 557
RsaNI	GTAC	4 cut(s)	235, 265, 522, 556
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	2 cut(s)	29, 568
Sau3AI	GATC	3 cut(s)	63, 280, 705
Sau96I	GGNCC	2 cut(s)	36, 693
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	158, 159, 340
SduI	GDGCHC	1 cut(s)	480
SexAI	ACCWGGT	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	606, 629
SfoI	GGCGCC	1 cut(s)	532
SmaI	CCCGGG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	467
SspDI	GGCGCC	1 cut(s)	530
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	4 cut(s)	374, 468, 483, 560
StyD4I	CCNGG	3 cut(s)	156, 157, 338
StyI	CCWWGG	2 cut(s)	18, 329
TaaI	ACNGT	2 cut(s)	116, 124
TaqI	TCGA	3 cut(s)	186, 270, 313
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	28, 567
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	275, 398
TspMI	CCCGGG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	512, 547
XmaI	CCCGGG	1 cut(s)	157
XspI	CTAG	4 cut(s)	374, 468, 483, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.