Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

8740876 .. 8744854

Gene Structure 3979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3477 bp

ATGGAGTCTCATAGAGTCAGTTTGGTCATAGTCATAGTCTGTTCTGTTCTACTTGCTGGTCTGTCTGCTCAGCCAAGCTTGGAGGTTGAAGTCGAGGCCTTGAAGGCGTTCAAGAAATCCATCACCAGCGACCCGAATGGAACACTTGCAGATTGGACGTCAGACGCAAGCCATCACTGCAATTGGTCTGGCATTGCCTGTGACCCCTCGACAAATCAAGTCATTTCAATTTCTCTGGCAGAAAAGCAGCTCACAGGCGTGATCTCACCCTTCCTCGGAAACATTTCAGGCCTCCAGGTTCTTGATCTAACTTCAAACTCATTCACTGGACATATTCCAGCTGAGCTGGGACTTTGCTCCCAACTTTCTCTACTTGCTCTGTATCAAAATTCTCTTTCGGGTTCAATTCCACCAGAACTAGGAAACCTTAGTAATCTGCAGTTATTAGATTTGGGTGATAACCTTTTGAGTGGAAGCATGCCGGAGAGCATTTGCAACTGCAGAAACTTGTCTTTGTTTGGTGCAGAATTTAATAACCTCACTGGCAAACTCCCATCAAACATAGGAAATCTTGTTAATCTTAAGCTTCTTATAGCAAGTGGCAACAACTTTGTAGGCTCATTACCTGCTTCCATGGGTAAGTTGGCAGCTTTCAAAGAGGTTGATTTAAGTAAAAACCAGTTGTCCGGTGCAATACCTAGGGAGCTAGGGAATCTGTCAAATTTAGAACAACTGGTAGTGTTTGATAATTCCTTTGTTGGGGAAATCCCTTCTGAACTAAGTCGGTGTAAGAAGCTTGTTAACCTTGAACTTTACAAGAATCATTTCACCGGAAGCATTCCCTCTGAGCTTGGAAGTTTGGTTCACTTAGAAACATTGAGATTGTACCAGAATAGGCTAAATTCTACAATTCCACTCTCCATTTTTCAGCTGAAATCATTAACCCATTTAGGACTTTCAGAAAATGAGTTAACCGGGACAATACCATCCGAGCTTGGATCTTTAAGATCATTGCAAGTATTGACCCTGCACTCCAATAAGTTTACTGGAGAGATCCCCTCATCCTTGACAAGCTTGACAAATCTAACATATCTGTCAATGAGCTTAAATTATCTAACAGGGGAACTTCCATCAAACATAGGGTTGCTTTATAATCTTAAAAACCTCTCCATGAATGGCAACCTTCTTGAGGGATCCATACCATCTAGTATCGCCAACTGTACCAATCTTCAAGTTATAAGCTTGGCTTATAATAGAATAACTGGAAAAATACCTCAGGGTCTGGGGCAGTTGCCGAATCTTAATTTCCTTTCTGTTGGATCAAATAAATTGTTTGGAGAAATCCCAGATGAACTCTTCAATTGCACTAGTCTTCTCACTCTAGATTTGGGCCTGAACAACTTTAGTGGTTATCTGAAACCCGGATTTGGAAAACTTTCCAATCTCAGGGTTTTGAGAGCCACCTCCAATTCATTTATCGGACAGATTCCACCAGAGATTGGCCAACTAAACCAACTTATCATCCTCACACTTGCTGAGAATAGATTCTCAGGTCCAGTTCCACCACAGCTGTCTAATCTCTCTCACCTACAAGGGCTATCCCTGCACGACAATGCTTTAGAAGGAGCCATCCCTGAGAAACTTTTTGAGCTAAAAGAGCTAACTGTTCTAGAGTTGCAGCAAAACAAACTGACCGGTCCAATTCCAGATTCTGTCTCAAAACTTGAGTTGCTTTCATACTTAAACCTCCAAGGTAATATGCTCAATGGTTCCATTCCGAAAAGCATGGCTCACCTTAGTCGGCTAACGACTCTGGATCTCTCTCACAATCATCTCTCAGGACCCATTCCAGGGTCTGTGATCTCAGGGATGAAAAGCATGCAGATATATTTGAATTTCTCATACAATTTCTTGGATGGCAGCATTCCAGACGAGCTTGGCATGTTGGAAATGGTGCAGGCCATTGACATTTCCAACAATAATCTTTCAGGGATGATTCCTGTAGCACTAGAAGGCTGCAGGAATTTGTACTCTCTTGATCTGTCAGGTAACAAACTTTCTGGGCCAATTCAAGCTGAAGTTTTTGCTAAGATGGACACCTTCACAAGCTTGAACCTTTCAAGGAATCACTTAGATGGTGAACTCCCAGAAAAGTTGACAAATCTGAAGCATCTTAGCTCCCTTGATCTTTCCCAGAATTTTCTGAGGGGAGTTATCCGTGAGAGCTTTACCAATTTTACCAGCTTGAAACACTTGAACCTCTCTTTCAATCAACTTGAAGGCCCTGTTCCAGACACCGGACTATTCAGAAGTATAAATGCATCCAGCTTGGTAGGAAACCCGGATCTCTGTGGAAACAAACTGCTCAAGACATGCAAGAAAAGTTCACACCGGATATCCAAGACAACCATGTATGCTCTCGTGGCGCTTGGAATAATTTCTGTACTGCTTATTCTAGTGATCATTTTCCTAATCCTCAGCCGGTTCACCAAAATGTGTAAGCCAGAAAAGATTGAAAATCCAGAACCAGAGTGTGCTGCAGCTTTGACACTCAAGAGGTTTGATCAAAAGGATTTAGAAAATGCCACTAGTTTCTTTAGCCAAGAGAACATTTTAGGCGCAAGCAGTTTGAGTACTGTGTACAAGGGTCAACTGGAAGATGAGCAGATAGTAGCCATAAAGAGATTGAATCTCCAGGAATTCTCAGTTGAGTCAGATAAATGCTTCAATAGAGAAATCAAGACACTGAGTCAACTAAGGCACAGGAATTTGGTGAAGGTACTTGGCTATGCATGGGAGAGCGGGAAATTAAAGGCCTTGGTTCTGGAATACATGGAGAATGGAAACCTGGAGAACATTATACATGAAGATGGGATGAATCAGTGGAGATTGACATTCTCTCAGAGAATCAATATTTTAATCTCTATAGCAAGTGGACTGGATTACCTGCATTCAGGCTATGATTTTCCCATCGTTCATTGCGACTTGAAGCCTTCTAACATCTTGTTGGATGAGGATTGGGAGGCCCATGTGAGTGATTTTGGAACAGCTAGAATGTTGGGTGTTCATCTCCAGGATGGGAGTAGCCTTTCCACGGCATCAGCTTTCCAAGGCACAATTGGCTACTTAGCACCAGAGTTTGCATACATGAGGAAAATCACAACCAAGGTAGACGTCTTCAGCTTTGGTGTAATAGTGATGGAGTTACTAACAAGACAAAGGCCAACAGGACTCATGGACGAGAATGGGCTGCCAATGAGCTTGCACCAAGTAGTGGAGAAAGCCCTTGCAAATGGATCAGATTCACTTCTTGAAGTTCTGGACCCGATGCTAACTTCAAATATCTCCGAGGAACAGGTGGCAAGTGCAGAAGAGCTGCTCAAGCTAGCCTTGTTTTGCACCAACCAAAATCCCGAGCAGCGACCTATCATGAATGAGGTGTTGTCTGCTCTTTTGAAGCTGAAAAAGGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

1158

Amino Acids

126.47

Weight (kDa)

5.58

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 68	1.9e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	182 - 272	1.9e-06	Leucine-rich repeat region
LRR_14	PF23598	269 - 370	1.6e-10	Leucine-rich repeat region
LRR_8	PF13855	289 - 348	9.3e-07	Leucine rich repeat
LRR_14	PF23598	317 - 391	7.1e-07	Leucine-rich repeat region
LRR_14	PF23598	378 - 488	1.6e-07	Leucine-rich repeat region
LRR_8	PF13855	385 - 444	5.5e-07	Leucine rich repeat
LRR_4	PF12799	408 - 448	8.9e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	472 - 561	2.4e-07	Leucine-rich repeat region
LRR_8	PF13855	528 - 588	3.3e-07	Leucine rich repeat
LRR_8	PF13855	553 - 612	5.8e-09	Leucine rich repeat
LRR_8	PF13855	653 - 711	9.5e-08	Leucine rich repeat
LRR_8	PF13855	702 - 759	7.8e-08	Leucine rich repeat
Pkinase	PF00069	867 - 1149	8.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	869 - 1151	3.4e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1152, 1238, 1251
AatII	GACGTC	2 cut(s)	161, 3177
Acc36I	ACCTGC	2 cut(s)	634, 2955
AccB7I	CCANNNNNTGG	2 cut(s)	1499, 3274
AccBSI	CCGCTC	1 cut(s)	2802
AccI	GTMKAC	1 cut(s)	3171
AciI	CCGC	1 cut(s)	2802
AclWI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3304
AcoI	YGGCCR	1 cut(s)	1501
AcsI	RAATTY	9 cut(s)	388, 527, 721, 901, 1894, 2023, 2197, 2699, 2767
AcuI	CTGAAG	3 cut(s)	2097, 2186, 3163
AcyI	GRCGYC	2 cut(s)	158, 3174
AfaI	GTAC	7 cut(s)	887, 1222, 2030, 2445, 2635, 2642, 2781
AflII	CTTAAG	1 cut(s)	581
AgeI	ACCGGT	1 cut(s)	1694
AhdI	GACNNNNNGTC	1 cut(s)	2748
AhlI	ACTAGT	2 cut(s)	1367, 2588
AjnI	CCWGG	5 cut(s)	294, 1849, 2694, 2847, 3072
AjuI	GAANNNNNNNTTGG	2 cut(s)	1693, 1725
AleI	CACNNNNGTG	1 cut(s)	257
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
Alw26I	GTCTC	2 cut(s)	12, 1720
AlwI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3304
AlwNI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
Ama87I	CYCGRG	1 cut(s)	3413
ApoI	RAATTY	9 cut(s)	388, 527, 721, 901, 1894, 2023, 2197, 2699, 2767
AsiGI	ACCGGT	1 cut(s)	1694
Asp700I	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2437
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	2428, 2621
AspS9I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3025, 3322
AsuC2I	CCSGG	3 cut(s)	976, 1422, 2342
AsuHPI	GGTGA	9 cut(s)	115, 258, 467, 820, 1577, 1784, 2150, 2479, 2785
AsuNHI	GCTAGC	1 cut(s)	3385
AvaI	CYCGRG	1 cut(s)	3413
AvaII	GGWCC	4 cut(s)	1553, 1697, 1841, 3322
AvrII	CCTAGG	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	1275
BalI	TGGCCA	1 cut(s)	1503
BamHI	GGATCC	1 cut(s)	1193
BauI	CACGAG	1 cut(s)	2420
BbsI	GAAGAC	2 cut(s)	1364, 3169
BbvCI	CCTCAGC	1 cut(s)	2477
BceAI	ACGGC	1 cut(s)	3111
BciT130I	CCWGG	5 cut(s)	296, 1851, 2696, 2849, 3074
BclI	TGATCA	2 cut(s)	2460, 2563
BcnI	CCSGG	3 cut(s)	976, 1422, 2342
BcoDI	GTCTC	2 cut(s)	12, 1720
BcuI	ACTAGT	2 cut(s)	1367, 2588
BfmI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2538, 2925
BfoI	RGCGCY	1 cut(s)	2429
BfrI	CTTAAG	1 cut(s)	581
BfuAI	ACCTGC	2 cut(s)	634, 2955
BglI	GCCNNNNNGGC	1 cut(s)	104
BlnI	CCTAGG	1 cut(s)	698
BlpI	GCTNAGC	2 cut(s)	69, 342
BmcAI	AGTACT	1 cut(s)	2635
Bme1390I	CCNGG	8 cut(s)	296, 976, 1422, 1851, 2342, 2696, 2849, 3074
Bme18I	GGWCC	4 cut(s)	1553, 1697, 1841, 3322
BmeRI	GACNNNNNGTC	1 cut(s)	2748
BmeT110I	CYCGRG	1 cut(s)	3413
BmgT120I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3025, 3322
BmiI	GGNNCC	5 cut(s)	1195, 1627, 1771, 1843, 3324
BmrFI	CCNGG	8 cut(s)	296, 976, 1422, 1851, 2342, 2696, 2849, 3074
BmsI	GCATC	4 cut(s)	2179, 2330, 3107, 3318
BmtI	GCTAGC	1 cut(s)	3389
BpiI	GAAGAC	2 cut(s)	1364, 3169
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
BpmI	CTGGAG	5 cut(s)	278, 1068, 2678, 2870, 3056
Bpu10I	CCTNAGC	1 cut(s)	2477
Bpu1102I	GCTNAGC	2 cut(s)	69, 342
BpuEI	CTTGAG	5 cut(s)	1208, 1745, 2351, 2537, 3365
BpuMI	CCSGG	3 cut(s)	976, 1422, 2342
BsaHI	GRCGYC	2 cut(s)	158, 3174
BsaWI	WCCGGW	5 cut(s)	686, 830, 1694, 2297, 2391
Bse118I	RCCGGY	2 cut(s)	1694, 2481
Bse1I	ACTGG	9 cut(s)	331, 547, 679, 738, 1051, 1267, 1556, 2658, 2943
Bse21I	CCTNAGG	1 cut(s)	1275
Bse3DI	GCAATG	3 cut(s)	192, 1010, 2977
BseBI	CCWGG	5 cut(s)	296, 1851, 2696, 2849, 3074
BseMI	GCAATG	3 cut(s)	192, 1010, 2977
BseNI	ACTGG	9 cut(s)	331, 547, 679, 738, 1051, 1267, 1556, 2658, 2943
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	5 cut(s)	543, 1013, 1589, 1976, 3387
BshTI	ACCGGT	1 cut(s)	1694
BsiHKCI	CYCGRG	1 cut(s)	3413
BslFI	GGGAC	2 cut(s)	363, 991
BsmAI	GTCTC	2 cut(s)	12, 1720
BsmFI	GGGAC	2 cut(s)	363, 991
BsmI	GAATGC	3 cut(s)	837, 1923, 2950
BsoBI	CYCGRG	1 cut(s)	3413
Bsp1407I	TGTACA	1 cut(s)	2640
Bsp1720I	GCTNAGC	2 cut(s)	69, 342
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	1 cut(s)	2802
BspHI	TCATGA	1 cut(s)	3429
BspLI	GGNNCC	5 cut(s)	1195, 1627, 1771, 1843, 3324
BspMAI	CTGCAG	4 cut(s)	441, 503, 2021, 2542
BspMI	ACCTGC	2 cut(s)	634, 2955
BspOI	GCTAGC	1 cut(s)	3389
BspPI	GGATC	8 cut(s)	1006, 1048, 1188, 1201, 1327, 1824, 2352, 3304
BspQI	GCTCTTC	1 cut(s)	3366
BspTI	CTTAAG	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	2802
BsrDI	GCAATG	3 cut(s)	192, 1010, 2977
BsrFI	RCCGGY	2 cut(s)	1694, 2481
BsrGI	TGTACA	1 cut(s)	2640
BsrI	ACTGG	9 cut(s)	331, 547, 679, 738, 1051, 1267, 1556, 2658, 2943
BssAI	RCCGGY	2 cut(s)	1694, 2481
BssNI	GRCGYC	2 cut(s)	158, 3174
BssSI	CACGAG	1 cut(s)	2420
BssT1I	CCWWGG	6 cut(s)	633, 698, 1750, 2817, 3109, 3165
Bst2BI	CACGAG	1 cut(s)	2420
Bst2UI	CCWGG	5 cut(s)	296, 1851, 2696, 2849, 3074
Bst4CI	ACNGT	3 cut(s)	1220, 1666, 2638
Bst6I	CTCTTC	2 cut(s)	1361, 3366
BstACI	GRCGYC	2 cut(s)	158, 3174
BstAFI	CTTAAG	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	2640
BstC8I	GCNNGC	7 cut(s)	169, 479, 1880, 1959, 2623, 3263, 3387
BstDSI	CCRYGG	2 cut(s)	633, 3093
BstENI	CCTNNNNNAGG	1 cut(s)	1187
BstH2I	RGCGCY	1 cut(s)	2429
BstHHI	GCGC	2 cut(s)	2428, 2621
BstMAI	GTCTC	2 cut(s)	12, 1720
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 177, 1603, 1657, 2423, 3120, 3382
BstNI	CCWGG	5 cut(s)	296, 1851, 2696, 2849, 3074
BstNSI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
BstSCI	CCNGG	8 cut(s)	294, 974, 1420, 1849, 2340, 2694, 2847, 3072
BstSFI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2538, 2925
BstV2I	GAAGAC	2 cut(s)	1364, 3169
BstX2I	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
BstYI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
Bsu36I	CCTNAGG	1 cut(s)	1275
BtgI	CCRYGG	2 cut(s)	633, 3093
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	5 cut(s)	175, 324, 540, 2744, 2888
BveI	ACCTGC	2 cut(s)	634, 2955
Cac8I	GCNNGC	7 cut(s)	169, 479, 1880, 1959, 2623, 3263, 3387
CaiI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
CciI	TCATGA	1 cut(s)	3429
CfoI	GCGC	2 cut(s)	2428, 2621
Cfr10I	RCCGGY	2 cut(s)	1694, 2481
Cfr13I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3025, 3322
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	7 cut(s)	886, 1221, 2029, 2444, 2634, 2641, 2780
CspAI	ACCGGT	1 cut(s)	1694
CspCI	CAANNNNNGTGG	2 cut(s)	1387, 1422
CviQI	GTAC	7 cut(s)	886, 1221, 2029, 2444, 2634, 2641, 2780
DriI	GACNNNNNGTC	1 cut(s)	2748
EaeI	YGGCCR	1 cut(s)	1501
Eam1104I	CTCTTC	2 cut(s)	1361, 3366
Eam1105I	GACNNNNNGTC	1 cut(s)	2748
EarI	CTCTTC	2 cut(s)	1361, 3366
Eco130I	CCWWGG	6 cut(s)	633, 698, 1750, 2817, 3109, 3165
Eco147I	AGGCCT	3 cut(s)	98, 291, 2816
Eco32I	GATATC	1 cut(s)	2397
Eco47I	GGWCC	4 cut(s)	1553, 1697, 1841, 3322
Eco57I	CTGAAG	3 cut(s)	2097, 2186, 3163
Eco81I	CCTNAGG	1 cut(s)	1275
Eco88I	CYCGRG	1 cut(s)	3413
EcoNI	CCTNNNNNAGG	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	1841, 2282
EcoRI	GAATTC	1 cut(s)	2699
EcoRII	CCWGG	5 cut(s)	294, 1849, 2694, 2847, 3072
EcoRV	GATATC	1 cut(s)	2397
EcoT14I	CCWWGG	6 cut(s)	633, 698, 1750, 2817, 3109, 3165
EcoT22I	ATGCAT	2 cut(s)	2323, 2794
ErhI	CCWWGG	6 cut(s)	633, 698, 1750, 2817, 3109, 3165
FalI	AAGNNNNNCTT	4 cut(s)	1231, 1263, 3374, 3406
FaqI	GGGAC	2 cut(s)	363, 991
FauI	CCCGC	1 cut(s)	2795
FbaI	TGATCA	2 cut(s)	2460, 2563
FblI	GTMKAC	1 cut(s)	3171
GlaI	GCGC	2 cut(s)	2427, 2620
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	5 cut(s)	278, 1068, 2678, 2870, 3056
HaeII	RGCGCY	1 cut(s)	2429
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	2428, 2621
Hin1I	GRCGYC	2 cut(s)	158, 3174
Hin6I	GCGC	2 cut(s)	2426, 2619
HinP1I	GCGC	2 cut(s)	2426, 2619
HincII	GTYRAC	5 cut(s)	802, 972, 2157, 2651, 2753
HindII	GTYRAC	5 cut(s)	802, 972, 2157, 2651, 2753
HindIII	AAGCTT	6 cut(s)	76, 584, 794, 1072, 1240, 2107
HpaI	GTTAAC	2 cut(s)	802, 972
HphI	GGTGA	9 cut(s)	115, 258, 467, 820, 1577, 1784, 2150, 2479, 2785
HpyCH4III	ACNGT	3 cut(s)	1220, 1666, 2638
HpyCH4IV	ACGT	2 cut(s)	158, 3174
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 177, 1603, 1657, 2423, 3120, 3382
HpySE526I	ACGT	2 cut(s)	158, 3174
Hsp92I	GRCGYC	2 cut(s)	158, 3174
HspAI	GCGC	2 cut(s)	2426, 2619
Ksp22I	TGATCA	2 cut(s)	2460, 2563
KspAI	GTTAAC	2 cut(s)	802, 972
LguI	GCTCTTC	1 cut(s)	3366
LmnI	GCTCC	4 cut(s)	362, 703, 1625, 2183
LweI	GCATC	4 cut(s)	2179, 2330, 3107, 3318
MaeII	ACGT	2 cut(s)	158, 3174
MaeIII	GTNAC	3 cut(s)	200, 2048, 3204
MbiI	CCGCTC	1 cut(s)	2802
MboII	GAAGA	7 cut(s)	1220, 1348, 1364, 2669, 2879, 3169, 3383
MfeI	CAATTG	3 cut(s)	181, 1360, 3117
MflI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
MlsI	TGGCCA	1 cut(s)	1503
MluNI	TGGCCA	1 cut(s)	1503
MlyI	GAGTC	6 cut(s)	14, 24, 1804, 2720, 2758, 3225
MmeI	TCCRAC	4 cut(s)	1297, 1926, 1998, 2988
Mox20I	TGGCCA	1 cut(s)	1503
Mph1103I	ATGCAT	2 cut(s)	2323, 2794
MroXI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2437
MscI	TGGCCA	1 cut(s)	1503
MslI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2492, 2868, 3033
Msp20I	TGGCCA	1 cut(s)	1503
MspA1I	CMGCKG	3 cut(s)	341, 931, 1570
MspCI	CTTAAG	1 cut(s)	581
MspR9I	CCNGG	8 cut(s)	296, 976, 1422, 1851, 2342, 2696, 2849, 3074
MunI	CAATTG	3 cut(s)	181, 1360, 3117
Mva1269I	GAATGC	3 cut(s)	837, 1923, 2950
MvaI	CCWGG	5 cut(s)	296, 1851, 2696, 2849, 3074
MwoI	GCNNNNNNNGC	7 cut(s)	104, 177, 1603, 1657, 2423, 3120, 3382
NciI	CCSGG	3 cut(s)	976, 1422, 2342
NcoI	CCATGG	1 cut(s)	633
NheI	GCTAGC	1 cut(s)	3385
NlaIV	GGNNCC	5 cut(s)	1195, 1627, 1771, 1843, 3324
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	2323, 2794
NspI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
OliI	CACNNNNGTG	1 cut(s)	257
PaeI	GCATGC	2 cut(s)	481, 1882
PagI	TCATGA	1 cut(s)	3429
PceI	AGGCCT	3 cut(s)	98, 291, 2816
PciSI	GCTCTTC	1 cut(s)	3366
PcsI	WCGNNNNNNNCGW	1 cut(s)	2979
PctI	GAATGC	3 cut(s)	837, 1923, 2950
PdmI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2437
PflMI	CCANNNNNTGG	2 cut(s)	1499, 3274
PfoI	TCCNGGA	2 cut(s)	2694, 3072
PinAI	ACCGGT	1 cut(s)	1694
PleI	GAGTC	6 cut(s)	13, 23, 1804, 2719, 2757, 3225
PpsI	GAGTC	6 cut(s)	13, 23, 1804, 2719, 2757, 3225
PpuMI	RGGWCCY	1 cut(s)	1841
PsiI	TTATAA	3 cut(s)	1152, 1238, 1251
Psp5II	RGGWCCY	1 cut(s)	1841
Psp6I	CCWGG	5 cut(s)	294, 1849, 2694, 2847, 3072
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	5 cut(s)	294, 1849, 2694, 2847, 3072
PspN4I	GGNNCC	5 cut(s)	1195, 1627, 1771, 1843, 3324
PspPI	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3025, 3322
PspPPI	RGGWCCY	1 cut(s)	1841
PstI	CTGCAG	4 cut(s)	441, 503, 2021, 2542
PstNI	CAGNNNCTG	3 cut(s)	1282, 1712, 1856
PsuI	RGATCY	5 cut(s)	998, 1053, 1193, 1816, 2344
PvuII	CAGCTG	3 cut(s)	341, 931, 1570
RsaI	GTAC	7 cut(s)	887, 1222, 2030, 2445, 2635, 2642, 2781
RsaNI	GTAC	7 cut(s)	886, 1221, 2029, 2444, 2634, 2641, 2780
RseI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2492, 2868, 3033
SapI	GCTCTTC	1 cut(s)	3366
Sau96I	GGNCC	8 cut(s)	1390, 1553, 1697, 1841, 2063, 2282, 3025, 3322
ScaI	AGTACT	1 cut(s)	2635
SchI	GAGTC	6 cut(s)	14, 24, 1804, 2720, 2758, 3225
ScrFI	CCNGG	8 cut(s)	296, 976, 1422, 1851, 2342, 2696, 2849, 3074
SfaNI	GCATC	4 cut(s)	2179, 2330, 3107, 3318
SfcI	CTRYAG	6 cut(s)	437, 499, 2001, 2017, 2538, 2925
SinI	GGWCC	4 cut(s)	1553, 1697, 1841, 3322
SmiMI	CAYNNNNRTG	6 cut(s)	257, 1611, 2133, 2492, 2868, 3033
SmlI	CTYRAG	6 cut(s)	581, 1187, 1724, 2366, 2552, 3380
SmoI	CTYRAG	6 cut(s)	581, 1187, 1724, 2366, 2552, 3380
SpeI	ACTAGT	2 cut(s)	1367, 2588
SphI	GCATGC	2 cut(s)	481, 1882
SseBI	AGGCCT	3 cut(s)	98, 291, 2816
SsiI	CCGC	1 cut(s)	2802
SspI	AATATT	1 cut(s)	2914
StuI	AGGCCT	3 cut(s)	98, 291, 2816
StyD4I	CCNGG	8 cut(s)	294, 974, 1420, 1849, 2340, 2694, 2847, 3072
StyI	CCWWGG	6 cut(s)	633, 698, 1750, 2817, 3109, 3165
TaaI	ACNGT	3 cut(s)	1220, 1666, 2638
TaiI	ACGT	2 cut(s)	161, 3177
TaqI	TCGA	2 cut(s)	93, 209
TatI	WGTACW	4 cut(s)	2028, 2443, 2633, 2640
TscAI	CASTG	5 cut(s)	182, 331, 547, 2751, 2888
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	2207
TspRI	CASTG	5 cut(s)	182, 331, 547, 2751, 2888
Van91I	CCANNNNNTGG	2 cut(s)	1499, 3274
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	4 cut(s)	1553, 1697, 1841, 3322
XagI	CCTNNNNNAGG	1 cut(s)	1187
XapI	RAATTY	9 cut(s)	388, 527, 721, 901, 1894, 2023, 2197, 2699, 2767
XbaI	TCTAGA	2 cut(s)	1381, 1669
XceI	RCATGY	4 cut(s)	481, 1882, 1945, 2376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	640, 3116
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	3171
XmnI	GAANNNNTTC	6 cut(s)	107, 283, 824, 1435, 1544, 2437
ZraI	GACGTC	2 cut(s)	159, 3175
ZrmI	AGTACT	1 cut(s)	2635
Zsp2I	ATGCAT	2 cut(s)	2323, 2794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.