Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

21080050 .. 21082088

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCATCCCAGTTCTCCATGGCCGAGCTGCTCAAGGCCACCAATAACTTCTCTTCAGACATGATCATCGACCATGGGGACTCCTTCCTGCTTTACAAGGCCCATCTCTCCAACGGTCTCACCGTCGCCGTCAAGAAGCATGACCCCGAAGAGTTCCCGGGGTTTCGCGAATTCCGAGCTGAAGTCGAAACTCTTGGAAGGCTTCGACACCCAAACATCGTCAAGCTCTTGGGGTACAGCGCCTCTGACTCGGGTGGACTTTTTGTCTACGAGTACATCGAGAGAGGATCACTCACCAAAGCCCATGTTCAAACTGCTGCCAACTTAACAAGAAGACCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

114

Amino Acids

12.76

Weight (kDa)

6.97

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 103	2.4e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 104	1.3e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	39, 201
AfaI	GTAC	2 cut(s)	236, 275
AgsI	TTSAA	1 cut(s)	311
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	3 cut(s)	28, 179, 226
AluI	AGCT	3 cut(s)	28, 179, 226
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	295
Ama87I	CYCGRG	2 cut(s)	157, 250
AoxI	GGCC	3 cut(s)	21, 36, 99
ApeKI	GCWGC	2 cut(s)	28, 317
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	158, 159
AsuHPI	GGTGA	2 cut(s)	112, 286
AvaI	CYCGRG	2 cut(s)	157, 250
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	15, 304
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	158, 159
BcoDI	GTCTC	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	2 cut(s)	29, 318
BlsI	GCNGC	2 cut(s)	30, 319
Bme1390I	CCNGG	2 cut(s)	158, 159
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	157, 250
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	158, 159
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	158, 159
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	18, 73, 157, 158
Bse1I	ACTGG	1 cut(s)	10
BseDI	CCNNGG	4 cut(s)	18, 73, 157, 158
BseGI	GGATG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	15, 304
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	23, 38, 101
BsiHKCI	CYCGRG	2 cut(s)	157, 250
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	23, 38, 101
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	157, 250
Bsp143I	GATC	2 cut(s)	63, 287
Bsp19I	CCATGG	2 cut(s)	18, 73
Bsp68I	TCGCGA	1 cut(s)	168
BspANI	GGCC	3 cut(s)	23, 38, 101
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	4 cut(s)	18, 73, 157, 158
BssMI	GATC	2 cut(s)	63, 287
BssT1I	CCWWGG	2 cut(s)	18, 73
Bst4CI	ACNGT	2 cut(s)	116, 124
Bst6I	CTCTTC	2 cut(s)	58, 144
BstDSI	CCRYGG	2 cut(s)	18, 73
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	66, 290
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	63, 287
BstSCI	CCNGG	2 cut(s)	156, 157
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	15, 304
BstV2I	GAAGAC	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	23, 38, 101
BtgI	CCRYGG	2 cut(s)	18, 73
BtsCI	GGATG	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	100
Cfr9I	CCCGGG	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	235, 274
CviAII	CATG	5 cut(s)	19, 61, 74, 140, 305
CviJI	RGCY	8 cut(s)	23, 28, 38, 101, 179, 202, 226, 302
CviKI_1	RGCY	8 cut(s)	23, 28, 38, 101, 179, 202, 226, 302
CviQI	GTAC	2 cut(s)	235, 274
DpnI	GATC	2 cut(s)	65, 289
DpnII	GATC	2 cut(s)	63, 287
DriI	GACNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	58, 144
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	2 cut(s)	58, 144
Eco130I	CCWWGG	2 cut(s)	18, 73
Eco31I	GGTCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	39, 201
Eco88I	CYCGRG	2 cut(s)	157, 250
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	18, 73
ErhI	CCWWGG	2 cut(s)	18, 73
FaeI	CATG	5 cut(s)	22, 64, 77, 143, 308
FaiI	YATR	5 cut(s)	20, 62, 75, 141, 306
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	5 cut(s)	18, 60, 73, 139, 304
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	29, 318
Fsp4HI	GCNGC	2 cut(s)	29, 318
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	29, 318
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	23, 38, 101
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	22, 64, 77, 143, 308
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	80, 248
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	112, 286
Hpy166II	GTNNAC	2 cut(s)	257, 268
Hpy188I	TCNGA	3 cut(s)	58, 176, 247
Hpy188III	TCNNGA	3 cut(s)	133, 167, 280
Hpy8I	GTNNAC	2 cut(s)	257, 268
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	94, 192
HpyCH4III	ACNGT	2 cut(s)	116, 124
Hsp92II	CATG	5 cut(s)	22, 64, 77, 143, 308
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	63, 287
LpnPI	CCDG	3 cut(s)	23, 101, 171
Lsp1109I	GCAGC	2 cut(s)	15, 304
MalI	GATC	2 cut(s)	65, 289
MboI	GATC	2 cut(s)	63, 287
MboII	GAAGA	3 cut(s)	45, 161, 345
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	74, 242
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	253, 278
MseI	TTAA	1 cut(s)	326
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	158, 159
MvnI	CGCG	1 cut(s)	168
NciI	CCSGG	2 cut(s)	158, 159
NcoI	CCATGG	2 cut(s)	18, 73
NdeII	GATC	2 cut(s)	63, 287
NlaIII	CATG	5 cut(s)	22, 64, 77, 143, 308
NmeAIII	GCCGAG	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 172, 276
PkrI	GCNGC	2 cut(s)	30, 319
PleI	GAGTC	2 cut(s)	74, 242
PpsI	GAGTC	2 cut(s)	74, 242
PspPI	GGNCC	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	2 cut(s)	236, 275
RsaNI	GTAC	2 cut(s)	235, 274
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	29, 318
Sau3AI	GATC	2 cut(s)	63, 287
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	74, 242
ScrFI	CCNGG	2 cut(s)	158, 159
SetI	ASST	3 cut(s)	30, 181, 228
SmaI	CCCGGG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	156, 157
StyI	CCWWGG	2 cut(s)	18, 73
TaaI	ACNGT	2 cut(s)	116, 124
TaqI	TCGA	4 cut(s)	69, 186, 205, 279
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseI	GCWGC	2 cut(s)	28, 317
TspMI	CCCGGG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.