Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

22332754 .. 22333578

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCGAGCTGCTCAAGGCCACCAATTACTTCTCTTCAGACATGATCATCGACCATGGGGACTCCTTCCTGTTTTACAAGGCCCAGCTCTCCAACGGTCGCACCGTCGCCGTCAAGAAGCATGACCCCGAAGAGTTCCCGGGGTTTCGCGAATTCCGAGCTGAAGTCGAAACTCTGGGAAAGCTTCGACACCCAAACATCGTCAAGCTCTTGGGGTACAGCGCCTATGACTCGGGTGGACTTTTTGTCTACGAGTACATCGAGAGAGGTAATCTTCATCGTTTGCTGCATGAGTCTAATACCCAATTACCATGGAAAACCAGATTGCAGATTGTTAAAGGAGTGGCTGATGCGCTCGCATATTTGCATGGCTTGGACCCCCGCATTGTTCGTAGGGACATTAGAACCCAAAATGTATTATTGGACTCCGAATTTCAGCCTCATATTACTAATTTTGGGCTCGCTAGGACGATCGAGTCACAGCATTCACATGTGTCAACAACTTGTGCAGGCGACATTGCATACATGCCACCGGAGTACTGTCAGGGATTGGACGTGGCTACCTTGAAAGGGGATGTATATAGTTTTGGGATTCTGATGTTGGCAATTGCATCAGGGACACGGCCCAGTTTTCCCGTCAGACTTGCAAATTGGGCCTGTAATCCCAAAATGAAAATGATCGATCCGAGTATTTGGAGGCAGGATTTGGATGAAGTCGTAGTTAAGAAGTACATTTCCATTGCTTGTTCATGTGCTAATAAGAGTTCAAGAGAGAGGCCTCCAATGACACAGGTTGTGGAGCTGTTGAATCAACTTTCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

275

Amino Acids

30.96

Weight (kDa)

7.69

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	26 - 267	1.4e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 269	1.3e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	152, 431
AcuI	CTGAAG	2 cut(s)	21, 183
AfaI	GTAC	4 cut(s)	218, 257, 539, 731
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	568, 768, 808
AhdI	GACNNNNNGTC	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	6 cut(s)	10, 88, 161, 184, 208, 802
AluI	AGCT	6 cut(s)	10, 88, 161, 184, 208, 802
AlwI	GGATC	1 cut(s)	677
Ama87I	CYCGRG	2 cut(s)	139, 232
AoxI	GGCC	6 cut(s)	3, 18, 81, 623, 654, 776
ApeKI	GCWGC	2 cut(s)	10, 286
ApoI	RAATTY	2 cut(s)	152, 431
AspLEI	GCGC	2 cut(s)	224, 355
AspS9I	GGNCC	4 cut(s)	82, 376, 624, 654
AsuC2I	CCSGG	2 cut(s)	140, 141
AvaI	CYCGRG	2 cut(s)	139, 232
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	95, 638
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	140, 141
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	2 cut(s)	11, 287
BlsI	GCNGC	2 cut(s)	12, 288
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	140, 141
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	139, 232
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	4 cut(s)	82, 376, 624, 654
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	140, 141
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	340, 620
BmuI	ACTGGG	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	140, 141
Bsa29I	ATCGAT	1 cut(s)	681
BsaJI	CCNNGG	4 cut(s)	55, 139, 140, 311
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	2 cut(s)	516, 738
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	55, 139, 140, 311
BseGI	GGATG	2 cut(s)	580, 715
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	516, 738
BseNI	ACTGG	1 cut(s)	627
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	2 cut(s)	100, 474
BshFI	GGCC	6 cut(s)	5, 20, 83, 625, 656, 778
BshVI	ATCGAT	1 cut(s)	681
BsiEI	CGRYCG	2 cut(s)	100, 474
BsiHKCI	CYCGRG	2 cut(s)	139, 232
BsiSI	CCGG	2 cut(s)	140, 533
BslFI	GGGAC	3 cut(s)	74, 410, 631
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmFI	GGGAC	3 cut(s)	74, 410, 631
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	6 cut(s)	5, 20, 83, 625, 656, 778
BsoBI	CYCGRG	2 cut(s)	139, 232
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	45, 471, 678, 682
Bsp19I	CCATGG	2 cut(s)	55, 311
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	6 cut(s)	5, 20, 83, 625, 656, 778
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	516, 738
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	55, 139, 140, 311
BssMI	GATC	4 cut(s)	45, 471, 678, 682
BssT1I	CCWWGG	2 cut(s)	55, 311
Bst4CI	ACNGT	3 cut(s)	98, 106, 542
Bst6I	CTCTTC	2 cut(s)	40, 126
BstC8I	GCNNGC	3 cut(s)	357, 462, 511
BstDSI	CCRYGG	2 cut(s)	55, 311
BstF5I	GGATG	2 cut(s)	580, 715
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 355
BstKTI	GATC	4 cut(s)	48, 474, 681, 685
BstMBI	GATC	4 cut(s)	45, 471, 678, 682
BstMCI	CGRYCG	2 cut(s)	100, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNSI	RCATGY	2 cut(s)	494, 529
BstSCI	CCNGG	2 cut(s)	138, 139
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	6 cut(s)	5, 20, 83, 625, 656, 778
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	2 cut(s)	55, 311
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	580, 715
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	357, 462, 511
CfoI	GCGC	2 cut(s)	224, 355
Cfr13I	GGNCC	4 cut(s)	82, 376, 624, 654
Cfr9I	CCCGGG	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	217, 256, 538, 730
CviQI	GTAC	4 cut(s)	217, 256, 538, 730
DpnI	GATC	4 cut(s)	47, 473, 680, 684
DpnII	GATC	4 cut(s)	45, 471, 678, 682
DrdI	GACNNNNNNGTC	1 cut(s)	475
DriI	GACNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	40, 126
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	2 cut(s)	40, 126
Eco130I	CCWWGG	2 cut(s)	55, 311
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	21, 183
Eco88I	CYCGRG	2 cut(s)	139, 232
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	55, 311
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	55, 311
FaqI	GGGAC	3 cut(s)	74, 410, 631
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	11, 287
FokI	GGATG	2 cut(s)	587, 722
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	11, 287
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	2 cut(s)	223, 354
GluI	GCNGC	2 cut(s)	11, 287
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	6 cut(s)	5, 20, 83, 625, 656, 778
HapII	CCGG	2 cut(s)	140, 533
HhaI	GCGC	2 cut(s)	224, 355
Hin6I	GCGC	2 cut(s)	222, 353
HinP1I	GCGC	2 cut(s)	222, 353
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	62, 230, 293, 425, 476, 592, 808
HpaII	CCGG	2 cut(s)	140, 533
Hpy166II	GTNNAC	3 cut(s)	239, 250, 498
Hpy188I	TCNGA	6 cut(s)	40, 158, 430, 597, 641, 687
Hpy188III	TCNNGA	4 cut(s)	115, 149, 262, 768
Hpy8I	GTNNAC	3 cut(s)	239, 250, 498
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	98, 106, 542
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	7 cut(s)	289, 328, 367, 509, 521, 611, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpySE526I	ACGT	1 cut(s)	555
HspAI	GCGC	2 cut(s)	222, 353
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	45, 471, 678, 682
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	340, 620
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	4 cut(s)	47, 473, 680, 684
MboI	GATC	4 cut(s)	45, 471, 678, 682
MboII	GAAGA	3 cut(s)	27, 143, 266
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	7 cut(s)	25, 152, 305, 431, 451, 606, 649
MlyI	GAGTC	5 cut(s)	56, 224, 302, 419, 485
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	260, 450, 690, 768, 789
MseI	TTAA	2 cut(s)	336, 723
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	2 cut(s)	140, 533
MspR9I	CCNGG	2 cut(s)	140, 141
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	2 cut(s)	140, 141
NcoI	CCATGG	2 cut(s)	55, 311
NdeII	GATC	4 cut(s)	45, 471, 678, 682
NlaIV	GGNNCC	1 cut(s)	378
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	477
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	494, 529
PceI	AGGCCT	1 cut(s)	778
PciI	ACATGT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 154, 258
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	592, 808
PkrI	GCNGC	2 cut(s)	12, 288
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	5 cut(s)	56, 224, 301, 419, 484
PpsI	GAGTC	5 cut(s)	56, 224, 301, 419, 484
PscI	ACATGT	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	4 cut(s)	82, 376, 624, 654
PvuI	CGATCG	1 cut(s)	474
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	4 cut(s)	218, 257, 539, 731
RsaNI	GTAC	4 cut(s)	217, 256, 538, 730
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	336, 723
SatI	GCNGC	2 cut(s)	11, 287
Sau3AI	GATC	4 cut(s)	45, 471, 678, 682
Sau96I	GGNCC	4 cut(s)	82, 376, 624, 654
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	5 cut(s)	56, 224, 302, 419, 485
ScrFI	CCNGG	2 cut(s)	140, 141
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	340, 620
SinI	GGWCC	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	7 cut(s)	25, 152, 305, 431, 451, 606, 649
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	138, 139
StyI	CCWWGG	2 cut(s)	55, 311
TaaI	ACNGT	3 cut(s)	98, 106, 542
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	6 cut(s)	51, 168, 187, 261, 474, 681
TasI	AATT	7 cut(s)	25, 152, 305, 431, 451, 606, 649
TatI	WGTACW	3 cut(s)	255, 537, 729
TfiI	GAWTC	2 cut(s)	592, 808
Tru1I	TTAA	2 cut(s)	336, 723
Tru9I	TTAA	2 cut(s)	336, 723
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	2 cut(s)	10, 286
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	4 cut(s)	266, 686, 726, 738
TspMI	CCCGGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	152, 431
XceI	RCATGY	2 cut(s)	494, 529
XmaI	CCCGGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.