Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

88093 .. 88917

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggccgagctgctcaaggccaccaataacttctcttcagacatgatcatcgaccatggggactccttcctgctttacaaggctcatctctccaacggtctcaccgtcgccgtcaagaagcatgaccctgaagagttcccggggtttcgcgaattccgagctgaagtcgaaactcttggaaggcttcgacacccaaacatagtcaagctcttagggtacagcgcctctgactcgggtggactttttgtctacgagtacatcgagagaggtaatcttcatcgtttgctgcatgagtctaatacccaattaccatggaaaaccagattgcagattgttaaaggtgtggctgatgcgctcgcatatttgcatggcttggacacccgcattgttcatagggacattaaaccccgaaatgtattattggactccgaatttcagcctcatattactaattttgggctcgctaggaggatcgactcagagcattctcatgtgtcaacaacttgtgccggcgacatcgaatacatgccaccggagtacagtcagggattggacaaggctaccttgaaaggggatgtgtatagttttgggattttgatgttggaaattgcatcaggggcacggcccagttttcccgtcagacttgcaaattgggcctgtattcccaaaatgaaaatgatcgattcgagtattcggaggcaggatttggatgaagtcgtagttaagaagtacatttccattgcttgttcatgtgctaataagagttcaagagagaggcctccaatgacacaggttgtagagctgttgaatcaactttccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

274

Amino Acids

30.88

Weight (kDa)

7.18

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	152, 431
AcuI	CTGAAG	3 cut(s)	21, 150, 183
AfaI	GTAC	4 cut(s)	218, 257, 539, 731
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	568, 768, 808
AhdI	GACNNNNNGTC	1 cut(s)	245
AluBI	AGCT	4 cut(s)	10, 161, 208, 802
AluI	AGCT	4 cut(s)	10, 161, 208, 802
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	2 cut(s)	139, 232
AoxI	GGCC	5 cut(s)	3, 18, 623, 654, 776
ApeKI	GCWGC	2 cut(s)	10, 286
ApoI	RAATTY	2 cut(s)	152, 431
AspLEI	GCGC	2 cut(s)	224, 355
AspS9I	GGNCC	2 cut(s)	624, 654
AsuC2I	CCSGG	2 cut(s)	140, 141
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	2 cut(s)	139, 232
BaeGI	GKGCMC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	95, 638
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	140, 141
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	2 cut(s)	11, 287
BlsI	GCNGC	2 cut(s)	12, 288
Bme1390I	CCNGG	2 cut(s)	140, 141
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	139, 232
BmgT120I	GGNCC	2 cut(s)	624, 654
BmrFI	CCNGG	2 cut(s)	140, 141
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	340, 620
BmuI	ACTGGG	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	140, 141
Bsa29I	ATCGAT	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	55, 139, 140, 311
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	55, 139, 140, 311
BseGI	GGATG	2 cut(s)	580, 715
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	5 cut(s)	5, 20, 625, 656, 778
BshVI	ATCGAT	1 cut(s)	681
BsiHKCI	CYCGRG	2 cut(s)	139, 232
BsiSI	CCGG	3 cut(s)	140, 510, 533
BslFI	GGGAC	2 cut(s)	74, 410
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	74, 410
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	5 cut(s)	5, 20, 625, 656, 778
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	139, 232
Bsp1286I	GDGCHC	2 cut(s)	462, 622
Bsp143I	GATC	3 cut(s)	45, 471, 678
Bsp19I	CCATGG	2 cut(s)	55, 311
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	5 cut(s)	5, 20, 625, 656, 778
BspCNI	CTCAG	1 cut(s)	491
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	55, 139, 140, 311
BssMI	GATC	3 cut(s)	45, 471, 678
BssT1I	CCWWGG	2 cut(s)	55, 311
Bst4CI	ACNGT	3 cut(s)	98, 106, 542
Bst6I	CTCTTC	2 cut(s)	40, 126
BstC8I	GCNNGC	3 cut(s)	357, 462, 511
BstDEI	CTNAG	2 cut(s)	211, 478
BstDSI	CCRYGG	2 cut(s)	55, 311
BstF5I	GGATG	2 cut(s)	580, 715
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 355
BstKTI	GATC	3 cut(s)	48, 474, 681
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	45, 471, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 653
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	138, 139
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	5 cut(s)	5, 20, 625, 656, 778
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	2 cut(s)	55, 311
BtsCI	GGATG	2 cut(s)	580, 715
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	357, 462, 511
CfoI	GCGC	2 cut(s)	224, 355
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	624, 654
Cfr9I	CCCGGG	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	217, 256, 538, 730
CviQI	GTAC	4 cut(s)	217, 256, 538, 730
DdeI	CTNAG	2 cut(s)	211, 478
DpnI	GATC	3 cut(s)	47, 473, 680
DpnII	GATC	3 cut(s)	45, 471, 678
DriI	GACNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	40, 126
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	2 cut(s)	40, 126
Eco130I	CCWWGG	2 cut(s)	55, 311
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	3 cut(s)	21, 150, 183
Eco88I	CYCGRG	2 cut(s)	139, 232
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	55, 311
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	55, 311
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	2 cut(s)	74, 410
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	11, 287
FokI	GGATG	2 cut(s)	587, 722
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	11, 287
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	2 cut(s)	223, 354
GluI	GCNGC	2 cut(s)	11, 287
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	5, 20, 625, 656, 778
HapII	CCGG	3 cut(s)	140, 510, 533
HhaI	GCGC	2 cut(s)	224, 355
Hin6I	GCGC	2 cut(s)	222, 353
HinP1I	GCGC	2 cut(s)	222, 353
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	7 cut(s)	62, 230, 293, 425, 476, 683, 808
HpaII	CCGG	3 cut(s)	140, 510, 533
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	239, 250, 498
Hpy188I	TCNGA	7 cut(s)	40, 158, 229, 430, 481, 641, 696
Hpy188III	TCNNGA	4 cut(s)	115, 149, 262, 768
Hpy8I	GTNNAC	3 cut(s)	239, 250, 498
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	76, 174
HpyCH4III	ACNGT	3 cut(s)	98, 106, 542
HpyCH4V	TGCA	5 cut(s)	289, 328, 367, 611, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 653
HpyF3I	CTNAG	2 cut(s)	211, 478
HspAI	GCGC	2 cut(s)	222, 353
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	45, 471, 678
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	340, 620
MaeI	CTAG	1 cut(s)	465
MalI	GATC	3 cut(s)	47, 473, 680
MboI	GATC	3 cut(s)	45, 471, 678
MboII	GAAGA	3 cut(s)	27, 143, 266
MhlI	GDGCHC	2 cut(s)	462, 622
MluCI	AATT	6 cut(s)	152, 305, 431, 451, 606, 649
MlyI	GAGTC	5 cut(s)	56, 224, 302, 419, 470
MmeI	TCCRAC	2 cut(s)	117, 582
MnlI	CCTC	7 cut(s)	235, 260, 450, 462, 690, 768, 789
MroNI	GCCGGC	1 cut(s)	509
MseI	TTAA	3 cut(s)	336, 402, 723
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	3 cut(s)	140, 510, 533
MspR9I	CCNGG	2 cut(s)	140, 141
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	617, 653
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	2 cut(s)	140, 141
NcoI	CCATGG	2 cut(s)	55, 311
NdeII	GATC	3 cut(s)	45, 471, 678
NgoMIV	GCCGGC	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 154, 258
PctI	GAATGC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	683, 808
PkrI	GCNGC	2 cut(s)	12, 288
PleI	GAGTC	5 cut(s)	56, 224, 301, 419, 470
PpsI	GAGTC	5 cut(s)	56, 224, 301, 419, 470
PspPI	GGNCC	2 cut(s)	624, 654
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	4 cut(s)	218, 257, 539, 731
RsaNI	GTAC	4 cut(s)	217, 256, 538, 730
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	336, 402, 723
SatI	GCNGC	2 cut(s)	11, 287
Sau3AI	GATC	3 cut(s)	45, 471, 678
Sau96I	GGNCC	2 cut(s)	624, 654
SchI	GAGTC	5 cut(s)	56, 224, 302, 419, 470
ScrFI	CCNGG	2 cut(s)	140, 141
SduI	GDGCHC	2 cut(s)	462, 622
SetI	ASST	8 cut(s)	12, 163, 210, 271, 343, 566, 795, 804
SfaNI	GCATC	2 cut(s)	340, 620
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	152, 305, 431, 451, 606, 649
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	138, 139
StyI	CCWWGG	2 cut(s)	55, 311
TaaI	ACNGT	3 cut(s)	98, 106, 542
TaqI	TCGA	8 cut(s)	51, 168, 187, 261, 474, 519, 681, 686
TasI	AATT	6 cut(s)	152, 305, 431, 451, 606, 649
TatI	WGTACW	3 cut(s)	255, 537, 729
TfiI	GAWTC	2 cut(s)	683, 808
Tru1I	TTAA	3 cut(s)	336, 402, 723
Tru9I	TTAA	3 cut(s)	336, 402, 723
TseI	GCWGC	2 cut(s)	10, 286
TspDTI	ATGAA	5 cut(s)	266, 380, 686, 726, 738
TspMI	CCCGGG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	152, 431
XceI	RCATGY	1 cut(s)	529
XmaI	CCCGGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.