Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

21112833 .. 21113693

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTAAGCTGCTAAGGGCCACAAATAACTTCTCTTCAGACATGATCATCGGCTATGGCGACTGCTTCCTGCTTTACAAGGCTCAACTCTCCAACGGTCTCACCGTCGCCATCAAGAAGCTTGACCAGAGAGAGTTCCCGGGGTTTCGTGAGTTTCGGGCTGAAGTCGAAACGCTTGGGAAGCTTCGTCACCCAAATATCGTCAAGCTCTTGGGGTACAACTCGGTTGGACATTTTGTGTATGAGTACATCGAGAGAGGCGATCTTCATTGTTTGTTGCATGACTGTGAAGTTCGAGATAACTCGTTACCATGGGAAACCAGGTTTCAGATTGTCAGAGGTGTGGCTGATGGGCTAGCATATTTACATGGGTTGGAAACCCCCATTGTTCATAGGGACATTAGAGCCAAAAATGTGTTACTTGACTTGGAGTTTCAGCCACATATTACTAATTTTGGGCTCGCTAGAAGGATTGAATCACAGCATTCGCATGTGTCAACTTGTACCGATGGCGCCATAGCATACATGCCTCCGGAGTACCTAGTCGGCTGCAATGTGGCTACCTTGAAAGGGGATGTGTTTAGTTTTGGCGTTCTGATGCTGGAAATCGCAACGGGGAGATGCCCAAGCCTACTCAACGAGCTTAATGGCAAGAAAAGGGGGTTAGTGGAATGGGCCAAGCGAATGATCACAAGTAATCGCCAAATGGAAATGGTGGATTCGAGGATTCTAAGGCAGGATTTGGATAAAGTCATAGTTGAGCAATATATGTCCATTGCTTGTTTGTGCACTTCTAATAATGATAAGGGGAGGCCCCCAATGAGAGAGGTCGTTGAGCTTCTAAATGAACTTTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

32.5

Weight (kDa)

6.76

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 277	5.5e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	26 - 281	5e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	21, 183
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	4 cut(s)	218, 248, 505, 539
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	476, 568, 855
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	6 cut(s)	10, 121, 184, 208, 643, 838
AluI	AGCT	6 cut(s)	10, 121, 184, 208, 643, 838
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	787
Ama87I	CYCGRG	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	3 cut(s)	18, 675, 812
ApaLI	GTGCAC	1 cut(s)	787
ApeKI	GCWGC	2 cut(s)	10, 549
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	3 cut(s)	18, 675, 813
AsuC2I	CCSGG	2 cut(s)	140, 141
AsuHPI	GGTGA	2 cut(s)	94, 182
AsuNHI	GCTAGC	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	3 cut(s)	119, 344, 503
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	2 cut(s)	45, 687
BcnI	CCSGG	2 cut(s)	140, 141
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	3 cut(s)	356, 465, 542
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	2 cut(s)	11, 550
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	12, 551
Bme1390I	CCNGG	3 cut(s)	140, 141, 322
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	18, 675, 813
BmiI	GGNNCC	2 cut(s)	514, 815
BmrFI	CCNGG	3 cut(s)	140, 141, 322
BmsI	GCATC	2 cut(s)	588, 611
BmtI	GCTAGC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuMI	CCSGG	2 cut(s)	140, 141
BsaHI	GRCGYC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	139, 140, 311
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse3DI	GCAATG	2 cut(s)	559, 774
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	3 cut(s)	139, 140, 311
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	559, 774
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	536
BshFI	GGCC	3 cut(s)	20, 677, 814
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	791
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	140, 533
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	20, 677, 814
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	462, 791
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	45, 262, 687
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	311
BspANI	GGCC	3 cut(s)	20, 677, 814
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	514, 815
BspOI	GCTAGC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	559, 774
BssECI	CCNNGG	3 cut(s)	139, 140, 311
BssMI	GATC	3 cut(s)	45, 262, 687
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	98, 106, 287
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	357, 462
BstDEI	CTNAG	3 cut(s)	6, 14, 731
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	580
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	3 cut(s)	48, 265, 690
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	45, 262, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	2 cut(s)	494, 529
BstSCI	CCNGG	3 cut(s)	138, 139, 320
BstSLI	GKGCMC	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	536
BsuRI	GGCC	3 cut(s)	20, 677, 814
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	357, 462
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	3 cut(s)	18, 675, 813
Cfr9I	CCCGGG	1 cut(s)	139
CsiI	ACCWGGT	1 cut(s)	320
Csp6I	GTAC	4 cut(s)	217, 247, 504, 538
CviAII	CATG	6 cut(s)	43, 281, 312, 368, 491, 526
CviQI	GTAC	4 cut(s)	217, 247, 504, 538
DdeI	CTNAG	3 cut(s)	6, 14, 731
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	3 cut(s)	47, 264, 689
DpnII	GATC	3 cut(s)	45, 262, 687
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	21, 183
Eco88I	CYCGRG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	6 cut(s)	46, 284, 315, 371, 494, 529
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	6 cut(s)	42, 280, 311, 367, 490, 525
FbaI	TGATCA	2 cut(s)	45, 687
Fnu4HI	GCNGC	2 cut(s)	11, 550
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	11, 550
FspBI	CTAG	3 cut(s)	356, 465, 542
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	2 cut(s)	11, 550
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	20, 677, 814
HapII	CCGG	2 cut(s)	140, 533
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	6 cut(s)	46, 284, 315, 371, 494, 529
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	2 cut(s)	119, 182
HinfI	GANTC	3 cut(s)	476, 719, 727
HpaII	CCGG	2 cut(s)	140, 533
HphI	GGTGA	2 cut(s)	94, 182
Hpy166II	GTNNAC	2 cut(s)	498, 789
Hpy188I	TCNGA	4 cut(s)	40, 330, 338, 597
Hpy188III	TCNNGA	5 cut(s)	115, 149, 253, 296, 533
Hpy8I	GTNNAC	2 cut(s)	498, 789
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	3 cut(s)	98, 106, 287
HpyCH4V	TGCA	3 cut(s)	280, 552, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	6, 14, 731
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	6 cut(s)	46, 284, 315, 371, 494, 529
HspAI	GCGC	1 cut(s)	513
KasI	GGCGCC	1 cut(s)	512
Kpn2I	TCCGGA	1 cut(s)	532
Ksp22I	TGATCA	2 cut(s)	45, 687
Kzo9I	GATC	3 cut(s)	45, 262, 687
LpnPI	CCDG	8 cut(s)	83, 140, 153, 307, 334, 546, 587, 722
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	588, 611
MabI	ACCWGGT	1 cut(s)	320
MaeI	CTAG	3 cut(s)	356, 465, 542
MaeIII	GTNAC	3 cut(s)	188, 306, 417
MalI	GATC	3 cut(s)	47, 264, 689
MboI	GATC	3 cut(s)	45, 262, 687
MboII	GAAGA	2 cut(s)	27, 257
MhlI	GDGCHC	2 cut(s)	462, 791
MluCI	AATT	1 cut(s)	451
Mly113I	GGCGCC	1 cut(s)	513
MmeI	TCCRAC	3 cut(s)	117, 208, 354
MnlI	CCTC	6 cut(s)	251, 332, 540, 717, 804, 820
MroI	TCCGGA	1 cut(s)	532
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	285, 489
MspI	CCGG	2 cut(s)	140, 533
MspR9I	CCNGG	3 cut(s)	140, 141, 322
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	513
NciI	CCSGG	2 cut(s)	140, 141
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	3 cut(s)	45, 262, 687
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	6 cut(s)	46, 284, 315, 371, 494, 529
NlaIV	GGNNCC	2 cut(s)	514, 815
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	494, 529
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 102, 258
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	476, 719, 727
PkrI	GCNGC	2 cut(s)	12, 551
PluTI	GGCGCC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	514, 815
PspPI	GGNCC	3 cut(s)	18, 675, 813
RsaI	GTAC	4 cut(s)	218, 248, 505, 539
RsaNI	GTAC	4 cut(s)	217, 247, 504, 538
RseI	CAYNNNNRTG	2 cut(s)	285, 489
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	11, 550
Sau3AI	GATC	3 cut(s)	45, 262, 687
Sau96I	GGNCC	3 cut(s)	18, 675, 813
ScrFI	CCNGG	3 cut(s)	140, 141, 322
SduI	GDGCHC	2 cut(s)	462, 791
SexAI	ACCWGGT	1 cut(s)	320
SfaNI	GCATC	2 cut(s)	588, 611
SfoI	GGCGCC	1 cut(s)	514
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	285, 489
Sse9I	AATT	1 cut(s)	451
SspDI	GGCGCC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	356, 465, 542
StyD4I	CCNGG	3 cut(s)	138, 139, 320
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	98, 106, 287
TaqI	TCGA	4 cut(s)	168, 252, 295, 722
TasI	AATT	1 cut(s)	451
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	476, 719, 727
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	10, 549
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	257, 380, 861
TspMI	CCCGGG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	787
XceI	RCATGY	2 cut(s)	494, 529
XmaI	CCCGGG	1 cut(s)	139
XspI	CTAG	3 cut(s)	356, 465, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.