Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

22531870 .. 22532988

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTGTGAAAAGCACACAAAAAGTGCGTTTCATTTCATTCTCTTGGGTTCCCCCGTCCCCGATGCGACTCTTTTACTATGCTTTTTTGGTTTGAAGTCTGAACCATTTACTTACTTAAATCTTGACGAACCTGCCATTATTCCAACTTTCTCTTGTAATTCCTTGTTCTTTCTTCCTACAGTCAAGCTTCTTAATTCATCCTTAGCTTTGGTTCATCGTCGATTTTCAGTGTTCAAAAGCATGTCGTCTCAGTTCTCCATGGCTAAGCTGCTAAGGGCCACAAATAACTTCTCTTCAGACATGATCATCGGCTATGGCGACTGCTTCCTGCTTTACAAGGCTCAACTCTCCAACGGTCTCACCGTCGCCATCAAGAAGCTTGACCCGAGAGAGTTCCCGGGGTTTCGTGAGTTTCGGGCTGAAGTCGAAACGCTTGGGAAGCTTCGTCACCCAAATATTGTCAAGCTCTTGGGGTACAGCTCGGTTGGACATTTTGTGTATGAGTACATCGAGAGAGGCGATCTTCATTGTTTGTTGCATGACTCTGAAGTTCGAGATAACTCGTTACCATGGGAAACCAGGTTTCAGATTGTCAGAGGTGTGGCTGATGGGCTAGCATATTTACATGGGTTGGAAACCCCCATTGTTCATAGGGACATTAGAGCCAAAAATGTGTTACTTGACTTGGAGTTTCAGCCACATATTACTAGTTTTGGGCTCGCTAGAAGGATTGAATCACAGCATTCGCATGTGTCAACTTGTACCGATGGCGCCATAGCATACATGCCTCCGGAGTACCTAGTCGGCTGCAATGTGGCTACCTTGAAAGGGGATGTGTTTAGTTTTGGCGTTCTGATGCTGGAAATCGCAACGGGGAGATGCCCAAGCCTACTCAACGAGCTTAATGGCAAGAAAAGGGGGTTAGTGGAATGGGCCAAGCGAATGATCACAAGTAATCGCCAAATGGAAATGGTGGATTCGAGGATTCTAAGGCAGGATTTGGATAAAGTCATAGTTGTGCAATATATGTCCATTGCTTGTTTGTGCACTTCTAATAATGATAAAGGGAGGCCCCCAATGAGAGAGGTCGTTGAGCTTCTACATGAACTTTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

372

Amino Acids

42.05

Weight (kDa)

8.01

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	100 - 306	1.9e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	112 - 366	6.9e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	770
AccIII	TCCGGA	1 cut(s)	790
AcuI	CTGAAG	3 cut(s)	279, 441, 567
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	4 cut(s)	476, 506, 763, 797
AfiI	CCNNNNNNNGG	1 cut(s)	828
AgsI	TTSAA	5 cut(s)	94, 235, 734, 826, 1113
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	9 cut(s)	187, 206, 268, 379, 442, 466, 480, 901, 1096
AluI	AGCT	9 cut(s)	187, 206, 268, 379, 442, 466, 480, 901, 1096
Alw21I	GWGCWC	1 cut(s)	1049
Alw26I	GTCTC	2 cut(s)	252, 362
Alw44I	GTGCAC	1 cut(s)	1045
Ama87I	CYCGRG	2 cut(s)	385, 397
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	3 cut(s)	276, 933, 1070
ApaLI	GTGCAC	1 cut(s)	1045
ApeKI	GCWGC	2 cut(s)	268, 807
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	3 cut(s)	276, 933, 1071
AsuC2I	CCSGG	2 cut(s)	398, 399
AsuHPI	GGTGA	2 cut(s)	352, 440
AsuNHI	GCTAGC	1 cut(s)	613
AvaI	CYCGRG	2 cut(s)	385, 397
BaeGI	GKGCMC	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	1049
BbvI	GCAGC	2 cut(s)	255, 794
BccI	CCATC	3 cut(s)	377, 602, 761
BciT130I	CCWGG	1 cut(s)	580
BclI	TGATCA	2 cut(s)	303, 945
BcnI	CCSGG	2 cut(s)	398, 399
BcoDI	GTCTC	2 cut(s)	252, 362
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	614, 708, 723, 800
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	269, 808
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	2 cut(s)	270, 809
Bme1390I	CCNGG	3 cut(s)	398, 399, 580
BmeT110I	CYCGRG	2 cut(s)	385, 397
BmgT120I	GGNCC	3 cut(s)	276, 933, 1071
BmiI	GGNNCC	3 cut(s)	49, 772, 1073
BmrFI	CCNGG	3 cut(s)	398, 399, 580
BmsI	GCATC	3 cut(s)	52, 846, 869
BmtI	GCTAGC	1 cut(s)	617
Bpu10I	CCTNAGC	2 cut(s)	202, 272
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuMI	CCSGG	2 cut(s)	398, 399
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	258, 397, 398, 569
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	1 cut(s)	828
Bse3DI	GCAATG	2 cut(s)	817, 1032
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	4 cut(s)	258, 397, 398, 569
BseGI	GGATG	2 cut(s)	197, 838
BseLI	CCNNNNNNNGG	1 cut(s)	828
BseMI	GCAATG	2 cut(s)	817, 1032
BseMII	CTCAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	255, 794
BshFI	GGCC	3 cut(s)	278, 935, 1072
BshNI	GGYRCC	1 cut(s)	770
BsiHKAI	GWGCWC	1 cut(s)	1049
BsiHKCI	CYCGRG	2 cut(s)	385, 397
BsiSI	CCGG	2 cut(s)	398, 791
BslFI	GGGAC	2 cut(s)	41, 668
BslI	CCNNNNNNNGG	1 cut(s)	828
BsmAI	GTCTC	2 cut(s)	252, 362
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	41, 668
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	3 cut(s)	278, 935, 1072
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	385, 397
Bsp1286I	GDGCHC	2 cut(s)	720, 1049
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	3 cut(s)	303, 520, 945
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	2 cut(s)	258, 569
BspANI	GGCC	3 cut(s)	278, 935, 1072
BspCNI	CTCAG	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	49, 772, 1073
BspMI	ACCTGC	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	770
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	817, 1032
BssECI	CCNNGG	4 cut(s)	258, 397, 398, 569
BssMI	GATC	3 cut(s)	303, 520, 945
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	2 cut(s)	258, 569
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	181, 356, 364
Bst6I	CTCTTC	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	615, 720
BstDEI	CTNAG	5 cut(s)	202, 249, 264, 272, 989
BstDSI	CCRYGG	2 cut(s)	258, 569
BstF5I	GGATG	2 cut(s)	197, 838
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	3 cut(s)	306, 523, 948
BstMAI	GTCTC	2 cut(s)	252, 362
BstMBI	GATC	3 cut(s)	303, 520, 945
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	3 cut(s)	244, 752, 787
BstSCI	CCNGG	3 cut(s)	396, 397, 578
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	1049
BstV1I	GCAGC	2 cut(s)	255, 794
BsuRI	GGCC	3 cut(s)	278, 935, 1072
BtgI	CCRYGG	2 cut(s)	258, 569
BtsCI	GGATG	2 cut(s)	197, 838
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	615, 720
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	3 cut(s)	276, 933, 1071
Cfr9I	CCCGGG	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	4 cut(s)	475, 505, 762, 796
CviAII	CATG	9 cut(s)	241, 259, 301, 539, 570, 626, 749, 784, 1103
CviQI	GTAC	4 cut(s)	475, 505, 762, 796
DdeI	CTNAG	5 cut(s)	202, 249, 264, 272, 989
DinI	GGCGCC	1 cut(s)	772
DpnI	GATC	3 cut(s)	305, 522, 947
DpnII	GATC	3 cut(s)	303, 520, 945
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	258, 569
Eco24I	GRGCYC	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	279, 441, 567
Eco88I	CYCGRG	2 cut(s)	385, 397
EcoO109I	RGGNCCY	1 cut(s)	1071
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	258, 569
EcoT38I	GRGCYC	1 cut(s)	720
EgeI	GGCGCC	1 cut(s)	772
EheI	GGCGCC	1 cut(s)	772
ErhI	CCWWGG	2 cut(s)	258, 569
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	9 cut(s)	244, 262, 304, 542, 573, 629, 752, 787, 1106
FaqI	GGGAC	2 cut(s)	41, 668
FatI	CATG	9 cut(s)	240, 258, 300, 538, 569, 625, 748, 783, 1102
FbaI	TGATCA	2 cut(s)	303, 945
Fnu4HI	GCNGC	2 cut(s)	269, 808
FokI	GGATG	2 cut(s)	184, 845
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	269, 808
FspBI	CTAG	4 cut(s)	614, 708, 723, 800
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	2 cut(s)	269, 808
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	278, 935, 1072
HapII	CCGG	2 cut(s)	398, 791
HhaI	GCGC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	9 cut(s)	244, 262, 304, 542, 573, 629, 752, 787, 1106
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	756
HindII	GTYRAC	1 cut(s)	756
HindIII	AAGCTT	3 cut(s)	185, 377, 440
HinfI	GANTC	5 cut(s)	67, 542, 734, 977, 985
HpaII	CCGG	2 cut(s)	398, 791
HphI	GGTGA	2 cut(s)	352, 440
Hpy166II	GTNNAC	2 cut(s)	756, 1047
Hpy188I	TCNGA	6 cut(s)	100, 298, 547, 588, 596, 855
Hpy188III	TCNNGA	6 cut(s)	122, 373, 407, 511, 554, 791
Hpy8I	GTNNAC	2 cut(s)	756, 1047
Hpy99I	CGWCG	2 cut(s)	222, 368
HpyAV	CCTTC	1 cut(s)	720
HpyCH4III	ACNGT	3 cut(s)	181, 356, 364
HpyCH4V	TGCA	4 cut(s)	538, 810, 1021, 1047
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	5 cut(s)	202, 249, 264, 272, 989
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	9 cut(s)	244, 262, 304, 542, 573, 629, 752, 787, 1106
HspAI	GCGC	1 cut(s)	771
KasI	GGCGCC	1 cut(s)	770
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	2 cut(s)	303, 945
Kzo9I	GATC	3 cut(s)	303, 520, 945
LpnPI	CCDG	8 cut(s)	144, 341, 411, 565, 592, 804, 845, 980
Lsp1109I	GCAGC	2 cut(s)	255, 794
LweI	GCATC	3 cut(s)	52, 846, 869
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	4 cut(s)	614, 708, 723, 800
MaeIII	GTNAC	3 cut(s)	446, 564, 675
MalI	GATC	3 cut(s)	305, 522, 947
MboI	GATC	3 cut(s)	303, 520, 945
MboII	GAAGA	3 cut(s)	164, 285, 515
MhlI	GDGCHC	2 cut(s)	720, 1049
MluCI	AATT	2 cut(s)	157, 193
Mly113I	GGCGCC	1 cut(s)	771
MlyI	GAGTC	2 cut(s)	61, 536
MmeI	TCCRAC	4 cut(s)	167, 375, 466, 612
MnlI	CCTC	6 cut(s)	509, 590, 798, 975, 1062, 1078
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	3 cut(s)	116, 192, 903
MslI	CAYNNNNRTG	2 cut(s)	747, 1016
MspI	CCGG	2 cut(s)	398, 791
MspR9I	CCNGG	3 cut(s)	398, 399, 580
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	439
NarI	GGCGCC	1 cut(s)	771
NciI	CCSGG	2 cut(s)	398, 399
NcoI	CCATGG	2 cut(s)	258, 569
NdeII	GATC	3 cut(s)	303, 520, 945
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	9 cut(s)	244, 262, 304, 542, 573, 629, 752, 787, 1106
NlaIV	GGNNCC	3 cut(s)	49, 772, 1073
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	3 cut(s)	244, 752, 787
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 360, 516
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	3 cut(s)	734, 977, 985
PkrI	GCNGC	2 cut(s)	270, 809
PleI	GAGTC	2 cut(s)	61, 536
PluTI	GGCGCC	1 cut(s)	774
PpsI	GAGTC	2 cut(s)	61, 536
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	49, 772, 1073
PspPI	GGNCC	3 cut(s)	276, 933, 1071
RsaI	GTAC	4 cut(s)	476, 506, 763, 797
RsaNI	GTAC	4 cut(s)	475, 505, 762, 796
RseI	CAYNNNNRTG	2 cut(s)	747, 1016
SaqAI	TTAA	3 cut(s)	116, 192, 903
SatI	GCNGC	2 cut(s)	269, 808
Sau3AI	GATC	3 cut(s)	303, 520, 945
Sau96I	GGNCC	3 cut(s)	276, 933, 1071
SchI	GAGTC	2 cut(s)	61, 536
ScrFI	CCNGG	3 cut(s)	398, 399, 580
SduI	GDGCHC	2 cut(s)	720, 1049
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	3 cut(s)	52, 846, 869
SfcI	CTRYAG	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	772
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	747, 1016
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	2 cut(s)	157, 193
SspDI	GGCGCC	1 cut(s)	770
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	4 cut(s)	614, 708, 723, 800
StyD4I	CCNGG	3 cut(s)	396, 397, 578
StyI	CCWWGG	2 cut(s)	258, 569
TaaI	ACNGT	3 cut(s)	181, 356, 364
TaqI	TCGA	5 cut(s)	220, 426, 510, 553, 980
TasI	AATT	2 cut(s)	157, 193
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	734, 977, 985
Tru1I	TTAA	3 cut(s)	116, 192, 903
Tru9I	TTAA	3 cut(s)	116, 192, 903
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	268, 807
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	7 cut(s)	20, 25, 186, 203, 515, 638, 1119
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	1 cut(s)	234
VneI	GTGCAC	1 cut(s)	1045
XceI	RCATGY	3 cut(s)	244, 752, 787
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	4 cut(s)	614, 708, 723, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.