Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012470.1

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

19214 .. 20041

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012470.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggccgagctgctcaaggccaccaataacttctcttcagacatgatcatcgaccatggggactccttcctgctttacaaggctcatctctccaacggtctcaccgtcgccgtcaagaagcatgaccccgaagagttcccggggtttcgcgaattccgagctgaagtcgaaactcttggaaggcttcgacacccaaacatcgtcaagctcttggggtacagcgcctctgactcgggtggactttttgtctacgagtacatcgagagaggtaatcttcatcgtttgctgcatgagtctaatacccaattaccatggaaaaccagattgcagattgttaaaggtgtggctgatgcgctcgcatatttgcatggcttggacacccgcattgttcatagggacattaaaccccgaaatgtattattggactccgaatttcagcctcatattactaattttgggctggctaggaggatcgactcagagcattcacatgtgtcaacaacttgtgccggcgacatccaatacatgccaccggagtacagtcagggattggacgcggctagcttgaaaggggatgtatatagttttgggattctgatgttggaaattgcatcaaggacacggcccagtacttttcccgtcagacttccaaattgggggtgtgatcccgaaatgaaaatgatcgattcgagtattcggaggcaggatttggatgaagtcgtagttaagaagtacatttccattgcttgttcatgtgctaataagagttcaagagagaggcctccaatgacacaggttgtagagctgttgaatcaactttccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

275

Amino Acids

31.05

Weight (kDa)

6.6

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	150, 557
AciI	CCGC	2 cut(s)	382, 557
AclWI	GGATC	2 cut(s)	479, 659
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	152, 431
AcuI	CTGAAG	2 cut(s)	21, 183
AfaI	GTAC	5 cut(s)	218, 257, 539, 631, 734
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	568, 771, 811
AhdI	GACNNNNNGTC	1 cut(s)	245
AluBI	AGCT	5 cut(s)	10, 161, 208, 564, 805
AluI	AGCT	5 cut(s)	10, 161, 208, 564, 805
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	479, 659
Ama87I	CYCGRG	2 cut(s)	139, 232
AoxI	GGCC	4 cut(s)	3, 18, 623, 779
ApeKI	GCWGC	2 cut(s)	10, 286
ApoI	RAATTY	2 cut(s)	152, 431
AspLEI	GCGC	2 cut(s)	224, 355
AspS9I	GGNCC	1 cut(s)	624
AsuC2I	CCSGG	2 cut(s)	140, 141
AsuHPI	GGTGA	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	560
AvaI	CYCGRG	2 cut(s)	139, 232
BbvI	GCAGC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	95, 638
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	140, 141
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	465, 561
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	3 cut(s)	11, 287, 558
BlsI	GCNGC	3 cut(s)	12, 288, 559
BmcAI	AGTACT	1 cut(s)	631
Bme1390I	CCNGG	2 cut(s)	140, 141
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	139, 232
BmgT120I	GGNCC	1 cut(s)	624
BmrFI	CCNGG	2 cut(s)	140, 141
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	340, 620
BmtI	GCTAGC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	140, 141
Bsa29I	ATCGAT	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	55, 139, 140, 311
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	741
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	4 cut(s)	55, 139, 140, 311
BseGI	GGATG	3 cut(s)	516, 580, 718
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	627
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	150, 557
BshFI	GGCC	4 cut(s)	5, 20, 625, 781
BshVI	ATCGAT	1 cut(s)	684
BsiHKCI	CYCGRG	2 cut(s)	139, 232
BsiSI	CCGG	3 cut(s)	140, 510, 533
BslFI	GGGAC	2 cut(s)	74, 410
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	74, 410
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	5, 20, 625, 781
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	139, 232
Bsp143I	GATC	4 cut(s)	45, 471, 664, 681
Bsp19I	CCATGG	2 cut(s)	55, 311
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	2 cut(s)	382, 557
BspANI	GGCC	4 cut(s)	5, 20, 625, 781
BspCNI	CTCAG	1 cut(s)	491
BspDI	ATCGAT	1 cut(s)	684
BspFNI	CGCG	2 cut(s)	150, 557
BspOI	GCTAGC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	479, 659
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	55, 139, 140, 311
BssMI	GATC	4 cut(s)	45, 471, 664, 681
BssT1I	CCWWGG	2 cut(s)	55, 311
Bst4CI	ACNGT	3 cut(s)	98, 106, 542
Bst6I	CTCTTC	2 cut(s)	40, 126
BstC8I	GCNNGC	4 cut(s)	357, 462, 511, 562
BstDEI	CTNAG	1 cut(s)	478
BstDSI	CCRYGG	2 cut(s)	55, 311
BstF5I	GGATG	3 cut(s)	516, 580, 718
BstFNI	CGCG	2 cut(s)	150, 557
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 355
BstKTI	GATC	4 cut(s)	48, 474, 667, 684
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	45, 471, 664, 681
BstNSI	RCATGY	2 cut(s)	494, 529
BstSCI	CCNGG	2 cut(s)	138, 139
BstUI	CGCG	2 cut(s)	150, 557
BstV1I	GCAGC	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	5, 20, 625, 781
BsuTUI	ATCGAT	1 cut(s)	684
BtgI	CCRYGG	2 cut(s)	55, 311
BtsCI	GGATG	3 cut(s)	516, 580, 718
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	4 cut(s)	357, 462, 511, 562
CfoI	GCGC	2 cut(s)	224, 355
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	624
Cfr9I	CCCGGG	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	5 cut(s)	217, 256, 538, 630, 733
CviQI	GTAC	5 cut(s)	217, 256, 538, 630, 733
DdeI	CTNAG	1 cut(s)	478
DpnI	GATC	4 cut(s)	47, 473, 666, 683
DpnII	GATC	4 cut(s)	45, 471, 664, 681
DriI	GACNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	40, 126
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	2 cut(s)	40, 126
Eco130I	CCWWGG	2 cut(s)	55, 311
Eco147I	AGGCCT	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	21, 183
Eco88I	CYCGRG	2 cut(s)	139, 232
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	55, 311
ErhI	CCWWGG	2 cut(s)	55, 311
FaqI	GGGAC	2 cut(s)	74, 410
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	11, 287, 558
FokI	GGATG	3 cut(s)	503, 587, 725
Fsp4HI	GCNGC	3 cut(s)	11, 287, 558
FspBI	CTAG	2 cut(s)	465, 561
GlaI	GCGC	2 cut(s)	223, 354
GluI	GCNGC	3 cut(s)	11, 287, 558
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	5, 20, 625, 781
HapII	CCGG	3 cut(s)	140, 510, 533
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	2 cut(s)	224, 355
Hin6I	GCGC	2 cut(s)	222, 353
HinP1I	GCGC	2 cut(s)	222, 353
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	8 cut(s)	62, 230, 293, 425, 476, 592, 686, 811
HpaII	CCGG	3 cut(s)	140, 510, 533
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	239, 250, 498
Hpy188I	TCNGA	8 cut(s)	40, 158, 229, 430, 481, 597, 644, 699
Hpy188III	TCNNGA	5 cut(s)	115, 149, 262, 668, 771
Hpy8I	GTNNAC	3 cut(s)	239, 250, 498
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	76, 174
HpyCH4III	ACNGT	3 cut(s)	98, 106, 542
HpyCH4V	TGCA	4 cut(s)	289, 328, 367, 611
HpyF3I	CTNAG	1 cut(s)	478
HspAI	GCGC	2 cut(s)	222, 353
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	45, 471, 664, 681
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	340, 620
MaeI	CTAG	2 cut(s)	465, 561
MalI	GATC	4 cut(s)	47, 473, 666, 683
MboI	GATC	4 cut(s)	45, 471, 664, 681
MboII	GAAGA	3 cut(s)	27, 143, 266
MluCI	AATT	6 cut(s)	152, 305, 431, 451, 606, 652
MlyI	GAGTC	5 cut(s)	56, 224, 302, 419, 470
MmeI	TCCRAC	2 cut(s)	117, 582
MnlI	CCTC	7 cut(s)	235, 260, 450, 462, 693, 771, 792
MroNI	GCCGGC	1 cut(s)	509
MseI	TTAA	3 cut(s)	336, 402, 726
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	3 cut(s)	140, 510, 533
MspR9I	CCNGG	2 cut(s)	140, 141
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	2 cut(s)	150, 557
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	2 cut(s)	140, 141
NcoI	CCATGG	2 cut(s)	55, 311
NdeII	GATC	4 cut(s)	45, 471, 664, 681
NgoMIV	GCCGGC	1 cut(s)	509
NheI	GCTAGC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	494, 529
PceI	AGGCCT	1 cut(s)	781
PciI	ACATGT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 154, 258
PctI	GAATGC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	592, 686, 811
PkrI	GCNGC	3 cut(s)	12, 288, 559
PleI	GAGTC	5 cut(s)	56, 224, 301, 419, 470
PpsI	GAGTC	5 cut(s)	56, 224, 301, 419, 470
PscI	ACATGT	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	624
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	5 cut(s)	218, 257, 539, 631, 734
RsaNI	GTAC	5 cut(s)	217, 256, 538, 630, 733
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	336, 402, 726
SatI	GCNGC	3 cut(s)	11, 287, 558
Sau3AI	GATC	4 cut(s)	45, 471, 664, 681
Sau96I	GGNCC	1 cut(s)	624
ScaI	AGTACT	1 cut(s)	631
SchI	GAGTC	5 cut(s)	56, 224, 302, 419, 470
ScrFI	CCNGG	2 cut(s)	140, 141
SetI	ASST	8 cut(s)	12, 163, 210, 271, 343, 566, 798, 807
SfaNI	GCATC	2 cut(s)	340, 620
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	152, 305, 431, 451, 606, 652
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	382, 557
SspMI	CTAG	2 cut(s)	465, 561
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	2 cut(s)	138, 139
StyI	CCWWGG	2 cut(s)	55, 311
TaaI	ACNGT	3 cut(s)	98, 106, 542
TaqI	TCGA	7 cut(s)	51, 168, 187, 261, 474, 684, 689
TasI	AATT	6 cut(s)	152, 305, 431, 451, 606, 652
TatI	WGTACW	4 cut(s)	255, 537, 629, 732
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	3 cut(s)	592, 686, 811
Tru1I	TTAA	3 cut(s)	336, 402, 726
Tru9I	TTAA	3 cut(s)	336, 402, 726
TseI	GCWGC	2 cut(s)	10, 286
TspDTI	ATGAA	5 cut(s)	266, 380, 689, 729, 741
TspMI	CCCGGG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	152, 431
XceI	RCATGY	2 cut(s)	494, 529
XmaI	CCCGGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	2 cut(s)	465, 561
ZrmI	AGTACT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.