Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

22560054 .. 22561244

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCATCGTCTCAGTTCTCCATGCCCAAGCTTCTCAAGGCCACCCAAAACTTCTCGCCAGACATGATCATCGGCCATGGGGACTCCTTCCTGCTTTACAAGGCTCATCTCTCCAACGGTCTCACCGTCGCCGTCAAGAAGCTTGATCCCAGAGAGTTCCCAGGGTTTAGGGAATTCCGAGCTGAAGCCCAAACACTTGGAAGGCTTCTACACCCAAATATCATCAAGCTCTTGGGATACAGCTCTGATGGACATTTCGTGTACGAGTACATTGAGAGAGGTGATCTTCAGTGCTTGCTACATGACTCCGATAACCCTTTACCATGGTCAACCAGGTTAGGGATTGTTAGAGGTGTGGCTAGTGGGCTCGCATATTTGCATGGCTTGAAAAGCCCTATTGTTCATAGGGACATCAGAGCCAAAAATGTGTTACTTGACTTGGAGTTTCAGCCACATATTACTAGCTTTGGGCTCGCTAGACAGATCGAATCATCGTATGTCTCGACTATTGATGATGGCGTCATGGGGTACATGCCACCGGAGTACCTAGCGGGGAGCAATGTGGCTACCTTGAGAGGAGATGTGTTTAGTTTTGGGATTCTGATGCTGGAAATCGCAACTGGGAAATGGCCCAACCTGCCGATCATGTTTGATGACAAGAAAATGTGGATTGTGGAATGGGCCAGGAAAATGGTCATGGGTGATCGGCAGATAGAAATGATGGATTCTTGTATTCCGATACAGGATTTGGATGAAGACATAGTTAAGAAGTATTTTTCCATTGCTTGTTCGTGTTCCCATGAGATTGCAAGAGAGAGGCCTCCTATGATCGAGGTCGTCAAGATTTTAAATGAGCTTTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

5.99

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 212	2.3e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 280	2.1e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	645
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	204, 272
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	4 cut(s)	263, 269, 530, 545
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	388, 861
AjnI	CCWGG	3 cut(s)	160, 332, 683
AluBI	AGCT	7 cut(s)	31, 142, 182, 229, 243, 465, 856
AluI	AGCT	7 cut(s)	31, 142, 182, 229, 243, 465, 856
Alw26I	GTCTC	3 cut(s)	15, 125, 505
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	5 cut(s)	39, 73, 629, 681, 818
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	630, 681
AsuHPI	GGTGA	3 cut(s)	115, 293, 713
BaeI	ACNNNNGTAYC	2 cut(s)	527, 560
BanII	GRGCYC	2 cut(s)	369, 474
BbsI	GAAGAC	1 cut(s)	762
BccI	CCATC	3 cut(s)	242, 509, 715
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	3 cut(s)	162, 334, 685
BciVI	GTATCC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	15, 125, 505
BfaI	CTAG	4 cut(s)	360, 462, 477, 548
BfuAI	ACCTGC	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	230
Bme1390I	CCNGG	3 cut(s)	162, 334, 685
BmgT120I	GGNCC	2 cut(s)	630, 681
BmrFI	CCNGG	3 cut(s)	162, 334, 685
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	20, 592
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	76, 160, 161, 323
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	2 cut(s)	565, 780
BseBI	CCWGG	3 cut(s)	162, 334, 685
BseDI	CCNNGG	4 cut(s)	76, 160, 161, 323
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	565, 780
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	591
BshFI	GGCC	5 cut(s)	41, 75, 631, 683, 820
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	95, 422
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	3 cut(s)	15, 125, 505
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	95, 422
BsnI	GGCC	5 cut(s)	41, 75, 631, 683, 820
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	369, 474
Bsp143I	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
Bsp19I	CCATGG	2 cut(s)	76, 323
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	5 cut(s)	41, 75, 631, 683, 820
BspCNI	CTCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	645
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	565, 780
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	4 cut(s)	76, 160, 161, 323
BssMI	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
BssNI	GRCGYC	1 cut(s)	519
BssT1I	CCWWGG	2 cut(s)	76, 323
Bst2UI	CCWGG	3 cut(s)	162, 334, 685
Bst4CI	ACNGT	2 cut(s)	119, 127
BstACI	GRCGYC	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	296, 369, 474
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	2 cut(s)	76, 323
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	7 cut(s)	69, 148, 286, 486, 645, 706, 831
BstMAI	GTCTC	3 cut(s)	15, 125, 505
BstMBI	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 637
BstNI	CCWGG	3 cut(s)	162, 334, 685
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	160, 332, 683
BstV2I	GAAGAC	1 cut(s)	762
BstXI	CCANNNNNNTGG	2 cut(s)	197, 691
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	5 cut(s)	41, 75, 631, 683, 820
BtgI	CCRYGG	2 cut(s)	76, 323
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	296, 369, 474
Cfr13I	GGNCC	2 cut(s)	630, 681
CseI	GACGC	1 cut(s)	508
CsiI	ACCWGGT	1 cut(s)	332
Csp6I	GTAC	4 cut(s)	262, 268, 529, 544
CviQI	GTAC	4 cut(s)	262, 268, 529, 544
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	7 cut(s)	68, 147, 285, 485, 644, 705, 830
DpnII	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
DraI	TTTAAA	1 cut(s)	849
EaeI	YGGCCR	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	76, 323
Eco147I	AGGCCT	1 cut(s)	820
Eco24I	GRGCYC	2 cut(s)	369, 474
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	204, 272
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	160, 332, 683
EcoT14I	CCWWGG	2 cut(s)	76, 323
EcoT38I	GRGCYC	2 cut(s)	369, 474
ErhI	CCWWGG	2 cut(s)	76, 323
Esp3I	CGTCTC	1 cut(s)	15
FaqI	GGGAC	2 cut(s)	95, 422
FauI	CCCGC	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	66
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	2 cut(s)	369, 474
FspBI	CTAG	4 cut(s)	360, 462, 477, 548
HaeIII	GGCC	5 cut(s)	41, 75, 631, 683, 820
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	519
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	2 cut(s)	29, 140
HinfI	GANTC	5 cut(s)	83, 305, 488, 598, 725
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	3 cut(s)	115, 293, 713
Hpy166II	GTNNAC	2 cut(s)	262, 330
Hpy188I	TCNGA	6 cut(s)	179, 247, 310, 416, 603, 738
Hpy188III	TCNNGA	3 cut(s)	136, 502, 841
Hpy8I	GTNNAC	2 cut(s)	262, 330
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	97, 195
HpyCH4III	ACNGT	2 cut(s)	119, 127
HpyCH4V	TGCA	2 cut(s)	379, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 637
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
LmnI	GCTCC	1 cut(s)	555
LweI	GCATC	1 cut(s)	594
MabI	ACCWGGT	1 cut(s)	332
MaeI	CTAG	4 cut(s)	360, 462, 477, 548
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	7 cut(s)	68, 147, 285, 485, 644, 705, 830
MboI	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
MboII	GAAGA	2 cut(s)	278, 767
MhlI	GDGCHC	2 cut(s)	369, 474
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	77, 299
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	272, 344, 569, 810, 826, 831
MseI	TTAA	2 cut(s)	765, 848
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	3 cut(s)	162, 334, 685
MvaI	CCWGG	3 cut(s)	162, 334, 685
MwoI	GCNNNNNNNGC	2 cut(s)	390, 637
NcoI	CCATGG	2 cut(s)	76, 323
NdeII	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
NspI	RCATGY	1 cut(s)	535
PasI	CCCWGGG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 500
PfeI	GAWTC	3 cut(s)	488, 598, 725
PleI	GAGTC	2 cut(s)	77, 299
PpsI	GAGTC	2 cut(s)	77, 299
Psp6I	CCWGG	3 cut(s)	160, 332, 683
PspGI	CCWGG	3 cut(s)	160, 332, 683
PspPI	GGNCC	2 cut(s)	630, 681
RsaI	GTAC	4 cut(s)	263, 269, 530, 545
RsaNI	GTAC	4 cut(s)	262, 268, 529, 544
SaqAI	TTAA	2 cut(s)	765, 848
Sau3AI	GATC	7 cut(s)	66, 145, 283, 483, 642, 703, 828
Sau96I	GGNCC	2 cut(s)	630, 681
SchI	GAGTC	2 cut(s)	77, 299
ScrFI	CCNGG	3 cut(s)	162, 334, 685
SduI	GDGCHC	2 cut(s)	369, 474
SexAI	ACCWGGT	1 cut(s)	332
SfaNI	GCATC	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	35, 571
SmoI	CTYRAG	2 cut(s)	35, 571
Sse9I	AATT	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	820
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	4 cut(s)	360, 462, 477, 548
StuI	AGGCCT	1 cut(s)	820
StyD4I	CCNGG	3 cut(s)	160, 332, 683
StyI	CCWWGG	2 cut(s)	76, 323
TaaI	ACNGT	2 cut(s)	119, 127
TaqI	TCGA	3 cut(s)	486, 503, 831
TasI	AATT	1 cut(s)	173
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	3 cut(s)	488, 598, 725
Tru1I	TTAA	2 cut(s)	765, 848
Tru9I	TTAA	2 cut(s)	765, 848
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	392, 768
TspRI	CASTG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	4 cut(s)	360, 462, 477, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.