Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Reverse (-)

21470637 .. 21471479

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCATCCCAGTTCTCCATGGCCGAGCTGCTCAAGGCCACCAATAACTTCTCTTCAGACATGATCATCGACCATGGGGACTCCTTCCTGCTTTACAAGGCCCAGCTCTCCAACGGTCTCACCGTCGCCGTCAAGAAGCATGACCCCGAAGAGTTCCCGGGGTTTCGCGAATTCCGAGCTGAAGTCGAAACTCTTGGAAAGCTTCGACACCCAAACATCGTCAAGCTCTTGGGGTACAGCGCCTCTGACTCGGGTGGACTTTTTGTCTACGAGTACATCGAGAGAGGTAATCTTCATCGTTTGCTGCATGAGTCTAATACCCAATTACCATGGAAAACCAGATTGCAGATTGTTAAAGGTGTGGCTGATGCGCTCGCATATTTGCATGGCTTGGACAACCGCATTGTTCATAGGGACATTAAACCCCGAAATGTATTATTGGATTCCGAATTTCAGCCTCATATTACTAATTTTGGGCTCGCTAGGAGGATCGACTCAGAGCATTCTCACGTGTCAACAACTTGTGCCGGCGACATCGAATACATGCCACCGGAGTACAGTCAGGGATTGGACAAGGCTACCTTGAAAGGTGATGTATATAGTTTTGGGATTCTGATGTTGGAAATTGCATCAGGGGCACGGCCCAGTTTTCCCGTCAGACTTGCAAATTGGGCCTGTATTCCCAAAATGAAAATGATCGATTCGAGTATTCGGAGGCAGGATTTGGATGAAGTCGTAGTTAAGAAGTACATTTCCATTGCTTGTTCATGTGCTAATAAGAGTTCAAGAGAGAGGCCTCCAATGACACAGGTTGTGGAGCTGTTGAATCAACTTTCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

280

Amino Acids

31.52

Weight (kDa)

7.15

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	32 - 273	4.5e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 275	1.1e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	170, 449
AcuI	CTGAAG	2 cut(s)	39, 201
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	4 cut(s)	236, 275, 557, 749
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	3 cut(s)	586, 786, 826
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	6 cut(s)	28, 106, 179, 202, 226, 820
AluI	AGCT	6 cut(s)	28, 106, 179, 202, 226, 820
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	157, 250
AoxI	GGCC	6 cut(s)	21, 36, 99, 641, 672, 794
ApeKI	GCWGC	2 cut(s)	28, 304
ApoI	RAATTY	2 cut(s)	170, 449
AspLEI	GCGC	2 cut(s)	242, 373
AspS9I	GGNCC	3 cut(s)	100, 642, 672
AsuC2I	CCSGG	2 cut(s)	158, 159
AsuHPI	GGTGA	2 cut(s)	112, 602
AvaI	CYCGRG	2 cut(s)	157, 250
BaeGI	GKGCMC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	15, 291
BceAI	ACGGC	2 cut(s)	113, 656
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	158, 159
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	2 cut(s)	29, 305
BlsI	GCNGC	2 cut(s)	30, 306
Bme1390I	CCNGG	2 cut(s)	158, 159
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	157, 250
BmgT120I	GGNCC	3 cut(s)	100, 642, 672
BmrFI	CCNGG	2 cut(s)	158, 159
BmrI	ACTGGG	2 cut(s)	4, 639
BmsI	GCATC	2 cut(s)	358, 638
BmuI	ACTGGG	2 cut(s)	4, 639
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	158, 159
Bsa29I	ATCGAT	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	18, 73, 157, 158, 329
BsaWI	WCCGGW	1 cut(s)	550
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	10, 645
Bse3DI	GCAATG	1 cut(s)	756
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	5 cut(s)	18, 73, 157, 158, 329
BseGI	GGATG	2 cut(s)	5, 733
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	10, 645
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	15, 291
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	6 cut(s)	23, 38, 101, 643, 674, 796
BshVI	ATCGAT	1 cut(s)	699
BsiHKCI	CYCGRG	2 cut(s)	157, 250
BsiSI	CCGG	3 cut(s)	158, 528, 551
BslFI	GGGAC	2 cut(s)	92, 428
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	92, 428
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	6 cut(s)	23, 38, 101, 643, 674, 796
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	157, 250
Bsp1286I	GDGCHC	2 cut(s)	480, 640
Bsp143I	GATC	3 cut(s)	63, 489, 696
Bsp19I	CCATGG	3 cut(s)	18, 73, 329
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	6 cut(s)	23, 38, 101, 643, 674, 796
BspCNI	CTCAG	1 cut(s)	509
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	10, 645
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	5 cut(s)	18, 73, 157, 158, 329
BssMI	GATC	3 cut(s)	63, 489, 696
BssT1I	CCWWGG	3 cut(s)	18, 73, 329
Bst4CI	ACNGT	3 cut(s)	116, 124, 560
Bst6I	CTCTTC	2 cut(s)	58, 144
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	375, 480, 529
BstDEI	CTNAG	1 cut(s)	496
BstDSI	CCRYGG	3 cut(s)	18, 73, 329
BstF5I	GGATG	2 cut(s)	5, 733
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 373
BstKTI	GATC	3 cut(s)	66, 492, 699
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	63, 489, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 671
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	156, 157
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	15, 291
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	6 cut(s)	23, 38, 101, 643, 674, 796
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	3 cut(s)	18, 73, 329
BtsCI	GGATG	2 cut(s)	5, 733
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	375, 480, 529
CfoI	GCGC	2 cut(s)	242, 373
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	100, 642, 672
Cfr9I	CCCGGG	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	4 cut(s)	235, 274, 556, 748
CviQI	GTAC	4 cut(s)	235, 274, 556, 748
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	3 cut(s)	65, 491, 698
DpnII	GATC	3 cut(s)	63, 489, 696
DriI	GACNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	58, 144
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	2 cut(s)	58, 144
Eco130I	CCWWGG	3 cut(s)	18, 73, 329
Eco147I	AGGCCT	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	39, 201
Eco72I	CACGTG	1 cut(s)	511
Eco88I	CYCGRG	2 cut(s)	157, 250
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	3 cut(s)	18, 73, 329
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	3 cut(s)	18, 73, 329
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	2 cut(s)	92, 428
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	29, 305
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	29, 305
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	241, 372
GluI	GCNGC	2 cut(s)	29, 305
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	6 cut(s)	23, 38, 101, 643, 674, 796
HapII	CCGG	3 cut(s)	158, 528, 551
HhaI	GCGC	2 cut(s)	242, 373
Hin6I	GCGC	2 cut(s)	240, 371
HinP1I	GCGC	2 cut(s)	240, 371
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	8 cut(s)	80, 248, 311, 443, 494, 610, 701, 826
HpaII	CCGG	3 cut(s)	158, 528, 551
HphI	GGTGA	2 cut(s)	112, 602
Hpy166II	GTNNAC	3 cut(s)	257, 268, 516
Hpy188I	TCNGA	8 cut(s)	58, 176, 247, 448, 499, 615, 659, 714
Hpy188III	TCNNGA	4 cut(s)	133, 167, 280, 786
Hpy8I	GTNNAC	3 cut(s)	257, 268, 516
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	3 cut(s)	116, 124, 560
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	5 cut(s)	307, 346, 385, 629, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 671
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	1 cut(s)	510
HspAI	GCGC	2 cut(s)	240, 371
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 489, 696
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	2 cut(s)	15, 291
LweI	GCATC	2 cut(s)	358, 638
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	510
MalI	GATC	3 cut(s)	65, 491, 698
MboI	GATC	3 cut(s)	63, 489, 696
MboII	GAAGA	3 cut(s)	45, 161, 284
MhlI	GDGCHC	2 cut(s)	480, 640
MluCI	AATT	6 cut(s)	170, 323, 449, 469, 624, 667
MlyI	GAGTC	4 cut(s)	74, 242, 320, 488
MmeI	TCCRAC	2 cut(s)	135, 600
MnlI	CCTC	7 cut(s)	253, 278, 468, 480, 708, 786, 807
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	3 cut(s)	354, 420, 741
MspI	CCGG	3 cut(s)	158, 528, 551
MspR9I	CCNGG	2 cut(s)	158, 159
Mva1269I	GAATGC	1 cut(s)	502
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	635, 671
NaeI	GCCGGC	1 cut(s)	529
NciI	CCSGG	2 cut(s)	158, 159
NcoI	CCATGG	3 cut(s)	18, 73, 329
NdeII	GATC	3 cut(s)	63, 489, 696
NgoMIV	GCCGGC	1 cut(s)	527
NmeAIII	GCCGAG	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 172, 276
PctI	GAATGC	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	4 cut(s)	443, 610, 701, 826
PkrI	GCNGC	2 cut(s)	30, 306
PleI	GAGTC	4 cut(s)	74, 242, 319, 488
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	4 cut(s)	74, 242, 319, 488
Ppu21I	YACGTR	1 cut(s)	511
PspCI	CACGTG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	100, 642, 672
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	4 cut(s)	236, 275, 557, 749
RsaNI	GTAC	4 cut(s)	235, 274, 556, 748
SaqAI	TTAA	3 cut(s)	354, 420, 741
SatI	GCNGC	2 cut(s)	29, 305
Sau3AI	GATC	3 cut(s)	63, 489, 696
Sau96I	GGNCC	3 cut(s)	100, 642, 672
SchI	GAGTC	4 cut(s)	74, 242, 320, 488
ScrFI	CCNGG	2 cut(s)	158, 159
SduI	GDGCHC	2 cut(s)	480, 640
SfaNI	GCATC	2 cut(s)	358, 638
SmaI	CCCGGG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	6 cut(s)	170, 323, 449, 469, 624, 667
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	2 cut(s)	156, 157
StyI	CCWWGG	3 cut(s)	18, 73, 329
TaaI	ACNGT	3 cut(s)	116, 124, 560
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	8 cut(s)	69, 186, 205, 279, 492, 537, 699, 704
TasI	AATT	6 cut(s)	170, 323, 449, 469, 624, 667
TatI	WGTACW	3 cut(s)	273, 555, 747
TfiI	GAWTC	4 cut(s)	443, 610, 701, 826
Tru1I	TTAA	3 cut(s)	354, 420, 741
Tru9I	TTAA	3 cut(s)	354, 420, 741
TseI	GCWGC	2 cut(s)	28, 304
TspDTI	ATGAA	5 cut(s)	284, 398, 704, 744, 756
TspMI	CCCGGG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	170, 449
XceI	RCATGY	1 cut(s)	547
XmaI	CCCGGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.