Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004493.1

Orthogroup ID

OG0007536

Physical Location & Seq

Genomic Coordinates Forward (+)

39826 .. 40671

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004493.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgcccaagcttctcaaggccacccaaaacttctcgccagacatgatcatcggccatggagactccttcctgctttacaaggctcatctctccaacggtctcaccgtcgccgtcaagaagcttgatcccagagagttcccagggtttagggaattccgagctgaagcccaaacacttggaaggcttctacacccaaatatcatcaagctcttgggatacagctctgatggacatttcgtgtacgagtacattgagagaggtgatcttcagtgcttgctacatgactccgataaccctttaccatggtcaaccaggttagggattgctagaggtgtggctagtgggctcgcatatttgcatggcttgaaaagccctattgttcatagggacatcagagccaaaaatgtgttacttgacttggagtttcagccacatattactagctttgggctcgctagacagatcgaatcatcgtatgtctcgactattgatgatggcgtcatggggtacatgccaccggagtacctagcggggagcaatgtggctaccttgagaggagatgtgtttagttttgggattctgatgctggaaatcgcaactgggaaatggcccaacctgccgatcatgttcgatgacaagaaaatgtggattgtggaatgggccaggaaaatggtcatgggtgatcggcagatagaaatgatggattcttgtattccgatacaggatttggatgaagacatagttaagaagtatttttccattgcttgttcgtgttcccatgagattgcaagagagaggcctcctatgatcgaggtcgtcaagattttaaatgagctttcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

281

Amino Acids

31.77

Weight (kDa)

5.99

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007536)

Species	Orthologous Gene IDs
malus_domestica	MD17G1056900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027481 RchiOBHm_Chr5g0027501 RchiOBHm_Chr5g0027531
rosa_laevigata	RLG00000033022 RLG00000033024
rosa_multiflora	Rmu_co8427539.1_g000001 Rmu_sc0004493.1_g000009 Rmu_sc0007802.1_g000028 Rmu_sc0007802.1_g000036 Rmu_sc0007802.1_g000041 Rmu_sc0012470.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052010 Rroxscaffold_1G00052030 Rroxscaffold_1G00052050
rosa_rugosa	Rorug05G0099300
rosa_samantha	Rh5AG193500 Rh5AG193600 Rh5BG191500 Rh5BG191600 Rh5CG211800 Rh5DG192900 Rh5DG193500
rosa_wichuraiana	Rw5G017630 Rw5G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	624
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	183, 251
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	4 cut(s)	242, 248, 509, 524
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	367, 840
AjnI	CCWGG	3 cut(s)	139, 311, 662
AluBI	AGCT	7 cut(s)	10, 121, 161, 208, 222, 444, 835
AluI	AGCT	7 cut(s)	10, 121, 161, 208, 222, 444, 835
Alw26I	GTCTC	3 cut(s)	54, 104, 484
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	5 cut(s)	18, 52, 608, 660, 797
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	609, 660
AsuHPI	GGTGA	3 cut(s)	94, 272, 692
BaeI	ACNNNNGTAYC	2 cut(s)	506, 539
BanII	GRGCYC	2 cut(s)	348, 453
BbsI	GAAGAC	1 cut(s)	741
BccI	CCATC	3 cut(s)	221, 488, 694
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	3 cut(s)	141, 313, 664
BciVI	GTATCC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	3 cut(s)	54, 104, 484
BfaI	CTAG	5 cut(s)	327, 339, 441, 456, 527
BfuAI	ACCTGC	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	141, 313, 664
BmgT120I	GGNCC	2 cut(s)	609, 660
BmrFI	CCNGG	3 cut(s)	141, 313, 664
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	55, 139, 140, 302
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	2 cut(s)	544, 759
BseBI	CCWGG	3 cut(s)	141, 313, 664
BseDI	CCNNGG	4 cut(s)	55, 139, 140, 302
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	2 cut(s)	544, 759
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	1 cut(s)	570
BshFI	GGCC	5 cut(s)	20, 54, 610, 662, 799
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	3 cut(s)	54, 104, 484
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	5 cut(s)	20, 54, 610, 662, 799
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	348, 453
Bsp143I	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
Bsp19I	CCATGG	2 cut(s)	55, 302
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	5 cut(s)	20, 54, 610, 662, 799
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	544, 759
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	55, 139, 140, 302
BssMI	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	2 cut(s)	55, 302
Bst2UI	CCWGG	3 cut(s)	141, 313, 664
Bst4CI	ACNGT	2 cut(s)	98, 106
BstACI	GRCGYC	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	275, 348, 453
BstDSI	CCRYGG	2 cut(s)	55, 302
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	7 cut(s)	48, 127, 265, 465, 624, 685, 810
BstMAI	GTCTC	3 cut(s)	54, 104, 484
BstMBI	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 616
BstNI	CCWGG	3 cut(s)	141, 313, 664
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	139, 311, 662
BstV2I	GAAGAC	1 cut(s)	741
BstXI	CCANNNNNNTGG	2 cut(s)	176, 670
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	5 cut(s)	20, 54, 610, 662, 799
BtgI	CCRYGG	2 cut(s)	55, 302
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	3 cut(s)	275, 348, 453
Cfr13I	GGNCC	2 cut(s)	609, 660
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	241, 247, 508, 523
CviQI	GTAC	4 cut(s)	241, 247, 508, 523
DpnI	GATC	7 cut(s)	47, 126, 264, 464, 623, 684, 809
DpnII	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	55, 302
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	2 cut(s)	348, 453
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	183, 251
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	3 cut(s)	139, 311, 662
EcoT14I	CCWWGG	2 cut(s)	55, 302
EcoT38I	GRGCYC	2 cut(s)	348, 453
ErhI	CCWWGG	2 cut(s)	55, 302
FaqI	GGGAC	1 cut(s)	401
FauI	CCCGC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	45
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	2 cut(s)	348, 453
FspBI	CTAG	5 cut(s)	327, 339, 441, 456, 527
HaeIII	GGCC	5 cut(s)	20, 54, 610, 662, 799
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	2 cut(s)	8, 119
HinfI	GANTC	5 cut(s)	62, 284, 467, 577, 704
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	3 cut(s)	94, 272, 692
Hpy166II	GTNNAC	2 cut(s)	241, 309
Hpy188I	TCNGA	6 cut(s)	158, 226, 289, 395, 582, 717
Hpy188III	TCNNGA	3 cut(s)	115, 481, 820
Hpy8I	GTNNAC	2 cut(s)	241, 309
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	76, 174
HpyCH4III	ACNGT	2 cut(s)	98, 106
HpyCH4V	TGCA	2 cut(s)	358, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 616
Hsp92I	GRCGYC	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
LmnI	GCTCC	1 cut(s)	534
LweI	GCATC	1 cut(s)	573
MabI	ACCWGGT	1 cut(s)	311
MaeI	CTAG	5 cut(s)	327, 339, 441, 456, 527
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	7 cut(s)	47, 126, 264, 464, 623, 684, 809
MboI	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
MboII	GAAGA	2 cut(s)	257, 746
MhlI	GDGCHC	2 cut(s)	348, 453
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	56, 278
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	251, 323, 548, 789, 805, 810
MseI	TTAA	2 cut(s)	744, 827
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	3 cut(s)	141, 313, 664
MvaI	CCWGG	3 cut(s)	141, 313, 664
MwoI	GCNNNNNNNGC	2 cut(s)	369, 616
NcoI	CCATGG	2 cut(s)	55, 302
NdeII	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
NspI	RCATGY	1 cut(s)	514
PasI	CCCWGGG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 479
PfeI	GAWTC	3 cut(s)	467, 577, 704
PleI	GAGTC	2 cut(s)	56, 278
PpsI	GAGTC	2 cut(s)	56, 278
Psp6I	CCWGG	3 cut(s)	139, 311, 662
PspGI	CCWGG	3 cut(s)	139, 311, 662
PspPI	GGNCC	2 cut(s)	609, 660
RsaI	GTAC	4 cut(s)	242, 248, 509, 524
RsaNI	GTAC	4 cut(s)	241, 247, 508, 523
SaqAI	TTAA	2 cut(s)	744, 827
Sau3AI	GATC	7 cut(s)	45, 124, 262, 462, 621, 682, 807
Sau96I	GGNCC	2 cut(s)	609, 660
SchI	GAGTC	2 cut(s)	56, 278
ScrFI	CCNGG	3 cut(s)	141, 313, 664
SduI	GDGCHC	2 cut(s)	348, 453
SexAI	ACCWGGT	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	14, 550
SmoI	CTYRAG	2 cut(s)	14, 550
Sse9I	AATT	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	5 cut(s)	327, 339, 441, 456, 527
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	3 cut(s)	139, 311, 662
StyI	CCWWGG	2 cut(s)	55, 302
TaaI	ACNGT	2 cut(s)	98, 106
TaqI	TCGA	4 cut(s)	465, 482, 630, 810
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	467, 577, 704
Tru1I	TTAA	2 cut(s)	744, 827
Tru9I	TTAA	2 cut(s)	744, 827
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	371, 747
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	5 cut(s)	327, 339, 441, 456, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.