AAA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16800 AT1G16800 AT1G16800 |
| fragaria_vesca | FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 |
| malus_domestica | MD17G1161500.v1.1 |
| prunus_persica | Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 |
| pyrus_communis | pycom17g15460 |
| rosa_chinensis | RchiOBHm_Chr2g0149261 |
| rosa_laevigata | RLG00000020388 |
| rosa_multiflora | Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00098260 |
| rosa_rugosa | Rorug02G0410000 |
| rosa_samantha | Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100 |
| rosa_wichuraiana | Rw2G038300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 231, 5013, 5097, 5715 |
| AarI | CACCTGC | 1 cut(s) | 2439 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2978 |
| Acc16I | TGCGCA | 1 cut(s) | 1327 |
| Acc36I | ACCTGC | 3 cut(s) | 1405, 2439, 5350 |
| Acc65I | GGTACC | 1 cut(s) | 5769 |
| AccB1I | GGYRCC | 4 cut(s) | 102, 1213, 5381, 5769 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1748, 4421 |
| AccBSI | CCGCTC | 1 cut(s) | 5954 |
| AccI | GTMKAC | 3 cut(s) | 2637, 4309, 6652 |
| AclI | AACGTT | 1 cut(s) | 5479 |
| AcoI | YGGCCR | 6 cut(s) | 3242, 3562, 4443, 4587, 5671, 6460 |
| AcuI | CTGAAG | 8 cut(s) | 1109, 1216, 2877, 3021, 4334, 5345, 5652, 6449 |
| AcvI | CACGTG | 1 cut(s) | 2261 |
| AfaI | GTAC | 7 cut(s) | 933, 2508, 3349, 3370, 4087, 4420, 5771 |
| AfeI | AGCGCT | 2 cut(s) | 908, 4456 |
| AflII | CTTAAG | 1 cut(s) | 749 |
| AflIII | ACRYGT | 6 cut(s) | 345, 2570, 5034, 6171, 6226, 6508 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5634 |
| AhlI | ACTAGT | 1 cut(s) | 3344 |
| AjiI | CACGTC | 1 cut(s) | 1980 |
| AjnI | CCWGG | 7 cut(s) | 1778, 2061, 3559, 4414, 4545, 5977, 6462 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2307, 2339 |
| AleI | CACNNNNGTG | 1 cut(s) | 1333 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 6473, 6505 |
| Alw21I | GWGCWC | 1 cut(s) | 4659 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1748, 1779, 2209, 2282, 4421, 4490 |
| Ama87I | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| Aor51HI | AGCGCT | 2 cut(s) | 908, 4456 |
| ApaI | GGGCCC | 1 cut(s) | 1343 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1243, 1275 |
| AseI | ATTAAT | 2 cut(s) | 2490, 6558 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3164, 3596 |
| Asp718I | GGTACC | 1 cut(s) | 5769 |
| AspA2I | CCTAGG | 1 cut(s) | 4370 |
| AspLEI | GCGC | 7 cut(s) | 672, 909, 1182, 1328, 4457, 4905, 6292 |
| AsuC2I | CCSGG | 4 cut(s) | 633, 1609, 1610, 5675 |
| AsuHPI | GGTGA | 9 cut(s) | 2009, 2367, 2647, 2931, 3003, 3055, 3534, 3729, 6713 |
| AsuII | TTCGAA | 1 cut(s) | 4517 |
| AvaI | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| AvaII | GGWCC | 5 cut(s) | 37, 380, 2173, 4409, 5642 |
| AvrII | CCTAGG | 1 cut(s) | 4370 |
| BaeGI | GKGCMC | 4 cut(s) | 1343, 1717, 4669, 5384 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3027, 3060, 4806, 4839 |
| BalI | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| BamHI | GGATCC | 2 cut(s) | 2914, 4975 |
| BanI | GGYRCC | 4 cut(s) | 102, 1213, 5381, 5769 |
| BanII | GRGCYC | 2 cut(s) | 1343, 3975 |
| BauI | CACGAG | 1 cut(s) | 5624 |
| BbrPI | CACGTG | 1 cut(s) | 2261 |
| BbsI | GAAGAC | 6 cut(s) | 78, 2118, 3447, 3813, 4986, 6343 |
| Bbv12I | GWGCWC | 1 cut(s) | 4659 |
| BceAI | ACGGC | 5 cut(s) | 116, 1776, 3257, 5291, 6451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4127, 4161 |
| BciT130I | CCWGG | 7 cut(s) | 1780, 2063, 3561, 4416, 4547, 5979, 6464 |
| BclI | TGATCA | 1 cut(s) | 4825 |
| BcnI | CCSGG | 4 cut(s) | 633, 1609, 1610, 5675 |
| BcuI | ACTAGT | 1 cut(s) | 3344 |
| BfmI | CTRYAG | 8 cut(s) | 1136, 1797, 2446, 3183, 3231, 4629, 4998, 5736 |
| BfoI | RGCGCY | 2 cut(s) | 910, 4458 |
| BfrI | CTTAAG | 1 cut(s) | 749 |
| BfuAI | ACCTGC | 3 cut(s) | 1405, 2439, 5350 |
| BglII | AGATCT | 4 cut(s) | 3227, 4276, 5230, 6689 |
| BlnI | CCTAGG | 1 cut(s) | 4370 |
| BmcAI | AGTACT | 1 cut(s) | 3349 |
| Bme18I | GGWCC | 5 cut(s) | 37, 380, 2173, 4409, 5642 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5634 |
| BmeT110I | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| BmgBI | CACGTC | 1 cut(s) | 1980 |
| BmrI | ACTGGG | 2 cut(s) | 4663, 6112 |
| BmuI | ACTGGG | 2 cut(s) | 4663, 6112 |
| BpiI | GAAGAC | 6 cut(s) | 78, 2118, 3447, 3813, 4986, 6343 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 5951, 5983 |
| BpmI | CTGGAG | 3 cut(s) | 864, 4398, 6438 |
| Bpu14I | TTCGAA | 1 cut(s) | 4517 |
| BpuEI | CTTGAG | 7 cut(s) | 1006, 2173, 2537, 4663, 5313, 5735, 6780 |
| BpuMI | CCSGG | 4 cut(s) | 633, 1609, 1610, 5675 |
| Bsa29I | ATCGAT | 1 cut(s) | 6315 |
| BsaAI | YACGTR | 1 cut(s) | 2261 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3885, 4974 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1024, 1054, 1845, 1875, 3061, 3091, 6436, 6466 |
| Bse3DI | GCAATG | 2 cut(s) | 2730, 3504 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3885, 4974 |
| BseBI | CCWGG | 7 cut(s) | 1780, 2063, 3561, 4416, 4547, 5979, 6464 |
| BseCI | ATCGAT | 1 cut(s) | 6315 |
| BseJI | GATNNNNATC | 2 cut(s) | 3885, 4974 |
| BseMI | GCAATG | 2 cut(s) | 2730, 3504 |
| BseMII | CTCAG | 7 cut(s) | 282, 552, 701, 1533, 2341, 4271, 6750 |
| BseRI | GAGGAG | 6 cut(s) | 71, 252, 295, 727, 1193, 3794 |
| BseSI | GKGCMC | 4 cut(s) | 1343, 1717, 4669, 5384 |
| BseYI | CCCAGC | 1 cut(s) | 324 |
| BsgI | GTGCAG | 3 cut(s) | 839, 3746, 5958 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 4930 |
| BshNI | GGYRCC | 4 cut(s) | 102, 1213, 5381, 5769 |
| BshVI | ATCGAT | 1 cut(s) | 6315 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 4930 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4659 |
| BsiHKCI | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| BsiSI | CCGG | 3 cut(s) | 632, 1609, 5674 |
| BslFI | GGGAC | 5 cut(s) | 212, 366, 4046, 4276, 5692 |
| BsmBI | CGTCTC | 1 cut(s) | 113 |
| BsmFI | GGGAC | 5 cut(s) | 212, 366, 4046, 4276, 5692 |
| BsmI | GAATGC | 7 cut(s) | 143, 1328, 1632, 1876, 2371, 4777, 5698 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| Bsp119I | TTCGAA | 1 cut(s) | 4517 |
| Bsp120I | GGGCCC | 1 cut(s) | 1339 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1343, 1717, 3975, 4659, 4669, 5384 |
| Bsp19I | CCATGG | 2 cut(s) | 2751, 5874 |
| BspCNI | CTCAG | 7 cut(s) | 283, 553, 702, 1534, 2340, 4272, 6749 |
| BspDI | ATCGAT | 1 cut(s) | 6315 |
| BspHI | TCATGA | 1 cut(s) | 3991 |
| BspMAI | CTGCAG | 4 cut(s) | 1140, 1801, 2450, 5740 |
| BspMI | ACCTGC | 3 cut(s) | 1405, 2439, 5350 |
| BspQI | GCTCTTC | 1 cut(s) | 1548 |
| BspT104I | TTCGAA | 1 cut(s) | 4517 |
| BspT107I | GGYRCC | 4 cut(s) | 102, 1213, 5381, 5769 |
| BspTI | CTTAAG | 1 cut(s) | 749 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrBI | CCGCTC | 1 cut(s) | 5954 |
| BsrDI | GCAATG | 2 cut(s) | 2730, 3504 |
| BssNAI | GTATAC | 2 cut(s) | 2638, 4310 |
| BssSI | CACGAG | 1 cut(s) | 5624 |
| Bst1107I | GTATAC | 2 cut(s) | 2638, 4310 |
| Bst2BI | CACGAG | 1 cut(s) | 5624 |
| Bst2UI | CCWGG | 7 cut(s) | 1780, 2063, 3561, 4416, 4547, 5979, 6464 |
| Bst6I | CTCTTC | 8 cut(s) | 19, 658, 1548, 1902, 2314, 2815, 3825, 5364 |
| BstAFI | CTTAAG | 1 cut(s) | 749 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 315, 6752 |
| BstBAI | YACGTR | 1 cut(s) | 2261 |
| BstBI | TTCGAA | 1 cut(s) | 4517 |
| BstDSI | CCRYGG | 2 cut(s) | 2751, 5874 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1208, 2066, 4403 |
| BstH2I | RGCGCY | 2 cut(s) | 910, 4458 |
| BstHHI | GCGC | 7 cut(s) | 672, 909, 1182, 1328, 4457, 4905, 6292 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 4930 |
| BstNI | CCWGG | 7 cut(s) | 1780, 2063, 3561, 4416, 4547, 5979, 6464 |
| BstSFI | CTRYAG | 8 cut(s) | 1136, 1797, 2446, 3183, 3231, 4629, 4998, 5736 |
| BstSLI | GKGCMC | 4 cut(s) | 1343, 1717, 4669, 5384 |
| BstV2I | GAAGAC | 6 cut(s) | 78, 2118, 3447, 3813, 4986, 6343 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 947, 1644 |
| BstZ17I | GTATAC | 2 cut(s) | 2638, 4310 |
| Bsu15I | ATCGAT | 1 cut(s) | 6315 |
| BsuTUI | ATCGAT | 1 cut(s) | 6315 |
| BtgI | CCRYGG | 2 cut(s) | 2751, 5874 |
| BtrI | CACGTC | 1 cut(s) | 1980 |
| BtsI | GCAGTG | 4 cut(s) | 311, 1079, 1979, 4898 |
| BveI | ACCTGC | 3 cut(s) | 1405, 2439, 5350 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1748, 1779, 2209, 2282, 4421, 4490 |
| CciI | TCATGA | 1 cut(s) | 3991 |
| CfoI | GCGC | 7 cut(s) | 672, 909, 1182, 1328, 4457, 4905, 6292 |
| Cfr9I | CCCGGG | 1 cut(s) | 1608 |
| ClaI | ATCGAT | 1 cut(s) | 6315 |
| CseI | GACGC | 2 cut(s) | 433, 6131 |
| Csp6I | GTAC | 7 cut(s) | 932, 2507, 3348, 3369, 4086, 4419, 5770 |
| CviQI | GTAC | 7 cut(s) | 932, 2507, 3348, 3369, 4086, 4419, 5770 |
| DraI | TTTAAA | 3 cut(s) | 1362, 3787, 5370 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2978 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5634 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2978 |
| EaeI | YGGCCR | 6 cut(s) | 3242, 3562, 4443, 4587, 5671, 6460 |
| Eam1104I | CTCTTC | 8 cut(s) | 19, 658, 1548, 1902, 2314, 2815, 3825, 5364 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5634 |
| EarI | CTCTTC | 8 cut(s) | 19, 658, 1548, 1902, 2314, 2815, 3825, 5364 |
| EciI | GGCGGA | 1 cut(s) | 4390 |
| Eco147I | AGGCCT | 2 cut(s) | 3164, 3559 |
| Eco24I | GRGCYC | 2 cut(s) | 1343, 3975 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco32I | GATATC | 2 cut(s) | 2421, 4207 |
| Eco47I | GGWCC | 5 cut(s) | 37, 380, 2173, 4409, 5642 |
| Eco47III | AGCGCT | 2 cut(s) | 908, 4456 |
| Eco57I | CTGAAG | 8 cut(s) | 1109, 1216, 2877, 3021, 4334, 5345, 5652, 6449 |
| Eco72I | CACGTG | 1 cut(s) | 2261 |
| Eco88I | CYCGRG | 3 cut(s) | 19, 1608, 3585 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1208, 2066, 4403 |
| EcoO109I | RGGNCCY | 4 cut(s) | 209, 1339, 1340, 4409 |
| EcoRI | GAATTC | 1 cut(s) | 962 |
| EcoRII | CCWGG | 7 cut(s) | 1778, 2061, 3559, 4414, 4545, 5977, 6462 |
| EcoRV | GATATC | 2 cut(s) | 2421, 4207 |
| EcoT22I | ATGCAT | 3 cut(s) | 145, 600, 646 |
| EcoT38I | GRGCYC | 2 cut(s) | 1343, 3975 |
| Esp3I | CGTCTC | 1 cut(s) | 113 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4307, 4339, 6422, 6454 |
| FaqI | GGGAC | 5 cut(s) | 212, 366, 4046, 4276, 5692 |
| FauI | CCCGC | 5 cut(s) | 1311, 4755, 5115, 5216, 6819 |
| FauNDI | CATATG | 4 cut(s) | 839, 1332, 3361, 5598 |
| FbaI | TGATCA | 1 cut(s) | 4825 |
| FblI | GTMKAC | 3 cut(s) | 2637, 4309, 6652 |
| FriOI | GRGCYC | 2 cut(s) | 1343, 3975 |
| FspAI | RTGCGCAY | 1 cut(s) | 1327 |
| FspI | TGCGCA | 1 cut(s) | 1327 |
| GlaI | GCGC | 7 cut(s) | 671, 908, 1181, 1327, 4456, 4904, 6291 |
| GsaI | CCCAGC | 1 cut(s) | 328 |
| GsuI | CTGGAG | 3 cut(s) | 864, 4398, 6438 |
| HaeII | RGCGCY | 2 cut(s) | 910, 4458 |
| HapII | CCGG | 3 cut(s) | 632, 1609, 5674 |
| HgaI | GACGC | 2 cut(s) | 433, 6131 |
| HhaI | GCGC | 7 cut(s) | 672, 909, 1182, 1328, 4457, 4905, 6292 |
| Hin6I | GCGC | 7 cut(s) | 670, 907, 1180, 1326, 4455, 4903, 6290 |
| HinP1I | GCGC | 7 cut(s) | 670, 907, 1180, 1326, 4455, 4903, 6290 |
| HincII | GTYRAC | 4 cut(s) | 589, 792, 1926, 4337 |
| HindII | GTYRAC | 4 cut(s) | 589, 792, 1926, 4337 |
| HindIII | AAGCTT | 5 cut(s) | 1016, 1149, 1826, 2002, 3611 |
| HpaI | GTTAAC | 1 cut(s) | 1926 |
| HpaII | CCGG | 3 cut(s) | 632, 1609, 5674 |
| HphI | GGTGA | 9 cut(s) | 2009, 2367, 2647, 2931, 3003, 3055, 3534, 3729, 6713 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyCH4IV | ACGT | 9 cut(s) | 829, 1979, 2260, 2361, 4088, 4093, 4954, 5479, 6508 |
| HpySE526I | ACGT | 9 cut(s) | 829, 1979, 2260, 2361, 4088, 4093, 4954, 5479, 6508 |
| HspAI | GCGC | 7 cut(s) | 670, 907, 1180, 1326, 4455, 4903, 6290 |
| KpnI | GGTACC | 1 cut(s) | 5773 |
| Ksp22I | TGATCA | 1 cut(s) | 4825 |
| KspAI | GTTAAC | 1 cut(s) | 1926 |
| LguI | GCTCTTC | 1 cut(s) | 1548 |
| LmnI | GCTCC | 7 cut(s) | 1984, 2890, 3082, 3403, 3517, 5677, 6217 |
| MaeII | ACGT | 9 cut(s) | 829, 1979, 2260, 2361, 4088, 4093, 4954, 5479, 6508 |
| MbiI | CCGCTC | 1 cut(s) | 5954 |
| MfeI | CAATTG | 2 cut(s) | 3072, 4437 |
| MhlI | GDGCHC | 6 cut(s) | 1343, 1717, 3975, 4659, 4669, 5384 |
| MlsI | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| MluNI | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| MlyI | GAGTC | 8 cut(s) | 557, 2200, 2381, 3055, 3461, 5830, 6506, 6680 |
| MmeI | TCCRAC | 5 cut(s) | 15, 804, 826, 2200, 6480 |
| Mox20I | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| Mph1103I | ATGCAT | 3 cut(s) | 145, 600, 646 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3164, 3596 |
| MscI | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| MslI | CAYNNNNRTG | 7 cut(s) | 945, 1211, 1333, 1637, 2110, 2967, 5568 |
| Msp20I | TGGCCA | 4 cut(s) | 3564, 4445, 4589, 6462 |
| MspA1I | CMGCKG | 3 cut(s) | 42, 5122, 6826 |
| MspCI | CTTAAG | 1 cut(s) | 749 |
| MspI | CCGG | 3 cut(s) | 632, 1609, 5674 |
| MunI | CAATTG | 2 cut(s) | 3072, 4437 |
| Mva1269I | GAATGC | 7 cut(s) | 143, 1328, 1632, 1876, 2371, 4777, 5698 |
| MvaI | CCWGG | 7 cut(s) | 1780, 2063, 3561, 4416, 4547, 5979, 6464 |
| NciI | CCSGG | 4 cut(s) | 633, 1609, 1610, 5675 |
| NcoI | CCATGG | 2 cut(s) | 2751, 5874 |
| NdeI | CATATG | 4 cut(s) | 839, 1332, 3361, 5598 |
| NmuCI | GTSAC | 8 cut(s) | 421, 1744, 2573, 2775, 3483, 4089, 6448, 6701 |
| NsbI | TGCGCA | 1 cut(s) | 1327 |
| NsiI | ATGCAT | 3 cut(s) | 145, 600, 646 |
| NspV | TTCGAA | 1 cut(s) | 4517 |
| OliI | CACNNNNGTG | 1 cut(s) | 1333 |
| PaeI | GCATGC | 4 cut(s) | 598, 4142, 6260, 6404 |
| PaeR7I | CTCGAG | 2 cut(s) | 19, 3585 |
| PagI | TCATGA | 1 cut(s) | 3991 |
| PaqCI | CACCTGC | 1 cut(s) | 2439 |
| PceI | AGGCCT | 2 cut(s) | 3164, 3559 |
| PciI | ACATGT | 5 cut(s) | 345, 2570, 5034, 6171, 6226 |
| PciSI | GCTCTTC | 1 cut(s) | 1548 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 7 cut(s) | 143, 1328, 1632, 1876, 2371, 4777, 5698 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3164, 3596 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1748, 4421 |
| PfoI | TCCNGGA | 1 cut(s) | 2061 |
| Ple19I | CGATCG | 2 cut(s) | 82, 4930 |
| PleI | GAGTC | 8 cut(s) | 556, 2200, 2381, 3054, 3460, 5829, 6505, 6679 |
| PmaCI | CACGTG | 1 cut(s) | 2261 |
| PmlI | CACGTG | 1 cut(s) | 2261 |
| PpsI | GAGTC | 8 cut(s) | 556, 2200, 2381, 3054, 3460, 5829, 6505, 6679 |
| Ppu21I | YACGTR | 1 cut(s) | 2261 |
| PpuMI | RGGWCCY | 1 cut(s) | 4409 |
| PscI | ACATGT | 5 cut(s) | 345, 2570, 5034, 6171, 6226 |
| PshBI | ATTAAT | 2 cut(s) | 2490, 6558 |
| PsiI | TTATAA | 4 cut(s) | 231, 5013, 5097, 5715 |
| Psp1406I | AACGTT | 1 cut(s) | 5479 |
| Psp5II | RGGWCCY | 1 cut(s) | 4409 |
| Psp6I | CCWGG | 7 cut(s) | 1778, 2061, 3559, 4414, 4545, 5977, 6462 |
| PspCI | CACGTG | 1 cut(s) | 2261 |
| PspFI | CCCAGC | 1 cut(s) | 324 |
| PspGI | CCWGG | 7 cut(s) | 1778, 2061, 3559, 4414, 4545, 5977, 6462 |
| PspOMI | GGGCCC | 1 cut(s) | 1339 |
| PspPPI | RGGWCCY | 1 cut(s) | 4409 |
| PspXI | VCTCGAGB | 1 cut(s) | 3585 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3361, 3393 |
| PstI | CTGCAG | 4 cut(s) | 1140, 1801, 2450, 5740 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1748, 1779, 2209, 2282, 4421, 4490 |
| PvuI | CGATCG | 2 cut(s) | 82, 4930 |
| RsaI | GTAC | 7 cut(s) | 933, 2508, 3349, 3370, 4087, 4420, 5771 |
| RsaNI | GTAC | 7 cut(s) | 932, 2507, 3348, 3369, 4086, 4419, 5770 |
| RseI | CAYNNNNRTG | 7 cut(s) | 945, 1211, 1333, 1637, 2110, 2967, 5568 |
| SapI | GCTCTTC | 1 cut(s) | 1548 |
| ScaI | AGTACT | 1 cut(s) | 3349 |
| SchI | GAGTC | 8 cut(s) | 557, 2200, 2381, 3055, 3461, 5830, 6506, 6680 |
| SduI | GDGCHC | 6 cut(s) | 1343, 1717, 3975, 4659, 4669, 5384 |
| SfcI | CTRYAG | 8 cut(s) | 1136, 1797, 2446, 3183, 3231, 4629, 4998, 5736 |
| Sfr274I | CTCGAG | 2 cut(s) | 19, 3585 |
| SfuI | TTCGAA | 1 cut(s) | 4517 |
| SinI | GGWCC | 5 cut(s) | 37, 380, 2173, 4409, 5642 |
| SlaI | CTCGAG | 2 cut(s) | 19, 3585 |
| SmaI | CCCGGG | 1 cut(s) | 1610 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 945, 1211, 1333, 1637, 2110, 2967, 5568 |
| SpeI | ACTAGT | 1 cut(s) | 3344 |
| SphI | GCATGC | 4 cut(s) | 598, 4142, 6260, 6404 |
| SseBI | AGGCCT | 2 cut(s) | 3164, 3559 |
| StuI | AGGCCT | 2 cut(s) | 3164, 3559 |
| TaiI | ACGT | 9 cut(s) | 832, 1982, 2263, 2364, 4091, 4096, 4957, 5482, 6511 |
| TaqII | GACCGA | 2 cut(s) | 2843, 3457 |
| TatI | WGTACW | 2 cut(s) | 931, 3347 |
| TauI | GCSGC | 2 cut(s) | 304, 5957 |
| TseFI | GTSAC | 8 cut(s) | 421, 1744, 2573, 2775, 3483, 4089, 6448, 6701 |
| Tsp45I | GTSAC | 8 cut(s) | 421, 1744, 2573, 2775, 3483, 4089, 6448, 6701 |
| TspGWI | ACGGA | 1 cut(s) | 6037 |
| TspMI | CCCGGG | 1 cut(s) | 1608 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1748, 4421 |
| Vha464I | CTTAAG | 1 cut(s) | 749 |
| VpaK11BI | GGWCC | 5 cut(s) | 37, 380, 2173, 4409, 5642 |
| VspI | ATTAAT | 2 cut(s) | 2490, 6558 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1208, 2066, 4403 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 820, 1776, 4721, 5881 |
| XhoI | CTCGAG | 2 cut(s) | 19, 3585 |
| XmaI | CCCGGG | 1 cut(s) | 1608 |
| XmaJI | CCTAGG | 1 cut(s) | 4370 |
| XmiI | GTMKAC | 3 cut(s) | 2637, 4309, 6652 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3164, 3596 |
| ZrmI | AGTACT | 1 cut(s) | 3349 |
| Zsp2I | ATGCAT | 3 cut(s) | 145, 600, 646 |