AAA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16800 AT1G16800 AT1G16800 |
| fragaria_vesca | FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 |
| malus_domestica | MD17G1161500.v1.1 |
| prunus_persica | Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 |
| pyrus_communis | pycom17g15460 |
| rosa_chinensis | RchiOBHm_Chr2g0149261 |
| rosa_laevigata | RLG00000020388 |
| rosa_multiflora | Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00098260 |
| rosa_rugosa | Rorug02G0410000 |
| rosa_samantha | Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100 |
| rosa_wichuraiana | Rw2G038300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1239, 4856 |
| AarI | CACCTGC | 1 cut(s) | 5609 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2066 |
| Acc36I | ACCTGC | 3 cut(s) | 94, 4060, 5609 |
| Acc65I | GGTACC | 1 cut(s) | 4479 |
| AccB1I | GGYRCC | 1 cut(s) | 4479 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 333, 506, 3137 |
| AccI | GTMKAC | 3 cut(s) | 351, 1062, 3642 |
| AccII | CGCG | 1 cut(s) | 406 |
| AciI | CCGC | 4 cut(s) | 1186, 1640, 3880, 4384 |
| AclI | AACGTT | 2 cut(s) | 3547, 4189 |
| AclWI | GGATC | 7 cut(s) | 710, 1016, 2156, 3819, 4109, 4582, 4942 |
| AcoI | YGGCCR | 4 cut(s) | 2281, 3159, 4204, 5137 |
| AcuI | CTGAAG | 7 cut(s) | 261, 804, 1581, 1728, 3041, 3050, 4055 |
| AcyI | GRCGYC | 1 cut(s) | 2194 |
| AdeI | CACNNNGTG | 1 cut(s) | 3620 |
| AfaI | GTAC | 9 cut(s) | 2044, 2803, 3136, 3327, 3372, 4481, 4880, 5206, 5248 |
| AflII | CTTAAG | 2 cut(s) | 3679, 3701 |
| AflIII | ACRYGT | 3 cut(s) | 1388, 3719, 5185 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 3703, 4309, 4344 |
| AhlI | ACTAGT | 1 cut(s) | 254 |
| AjnI | CCWGG | 4 cut(s) | 3130, 3261, 4044, 4687 |
| Alw21I | GWGCWC | 1 cut(s) | 3385 |
| Alw26I | GTCTC | 8 cut(s) | 1498, 1960, 2233, 2742, 3933, 4331, 4536, 5572 |
| AlwI | GGATC | 7 cut(s) | 710, 1016, 2156, 3819, 4109, 4582, 4942 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 827, 901, 959, 1106, 3137 |
| Ama87I | CYCGRG | 1 cut(s) | 1193 |
| AoxI | GGCC | 9 cut(s) | 28, 1112, 1564, 1900, 2281, 3159, 3433, 4204, 5137 |
| ApaI | GGGCCC | 1 cut(s) | 32 |
| AseI | ATTAAT | 4 cut(s) | 6, 134, 1155, 3846 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4696 |
| Asp718I | GGTACC | 1 cut(s) | 4479 |
| AspLEI | GCGC | 4 cut(s) | 406, 709, 2126, 5022 |
| AspS9I | GGNCC | 6 cut(s) | 28, 29, 865, 3125, 4352, 5027 |
| AsuC2I | CCSGG | 2 cut(s) | 1028, 1249 |
| AsuHPI | GGTGA | 9 cut(s) | 701, 1351, 2445, 4124, 5075, 5132, 5210, 5333, 5393 |
| AsuII | TTCGAA | 2 cut(s) | 601, 3233 |
| AvaI | CYCGRG | 1 cut(s) | 1193 |
| AvaII | GGWCC | 4 cut(s) | 865, 3125, 4352, 5027 |
| BaeGI | GKGCMC | 1 cut(s) | 32 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 867, 900, 3522, 3555, 4434, 4467 |
| BalI | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| BanI | GGYRCC | 1 cut(s) | 4479 |
| BanII | GRGCYC | 2 cut(s) | 32, 2691 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1701, 1733 |
| BbsI | GAAGAC | 5 cut(s) | 219, 2529, 3027, 3597, 5056 |
| Bbv12I | GWGCWC | 1 cut(s) | 3385 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2843, 2877 |
| BciT130I | CCWGG | 4 cut(s) | 3132, 3263, 4046, 4689 |
| BciVI | GTATCC | 4 cut(s) | 229, 244, 1632, 3523 |
| BclI | TGATCA | 3 cut(s) | 1962, 3541, 3685 |
| BcnI | CCSGG | 2 cut(s) | 1028, 1249 |
| BcoDI | GTCTC | 8 cut(s) | 1498, 1960, 2233, 2742, 3933, 4331, 4536, 5572 |
| BcuI | ACTAGT | 1 cut(s) | 254 |
| BfmI | CTRYAG | 6 cut(s) | 486, 1887, 2637, 3345, 4446, 5616 |
| BfoI | RGCGCY | 1 cut(s) | 2127 |
| BfrI | CTTAAG | 2 cut(s) | 3679, 3701 |
| BfuAI | ACCTGC | 3 cut(s) | 94, 4060, 5609 |
| BfuI | GTATCC | 4 cut(s) | 229, 244, 1632, 3523 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2326 |
| BglII | AGATCT | 3 cut(s) | 94, 2992, 5099 |
| BmcAI | AGTACT | 1 cut(s) | 5248 |
| Bme1390I | CCNGG | 6 cut(s) | 1028, 1249, 3132, 3263, 4046, 4689 |
| Bme18I | GGWCC | 4 cut(s) | 865, 3125, 4352, 5027 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 3703, 4309, 4344 |
| BmeT110I | CYCGRG | 1 cut(s) | 1193 |
| BmgT120I | GGNCC | 6 cut(s) | 28, 29, 865, 3125, 4352, 5027 |
| BmrFI | CCNGG | 6 cut(s) | 1028, 1249, 3132, 3263, 4046, 4689 |
| BmrI | ACTGGG | 3 cut(s) | 1085, 4205, 4822 |
| BmuI | ACTGGG | 3 cut(s) | 1085, 4205, 4822 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1181, 4254 |
| BpiI | GAAGAC | 5 cut(s) | 219, 2529, 3027, 3597, 5056 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4746, 4778 |
| BpmI | CTGGAG | 1 cut(s) | 3114 |
| Bpu14I | TTCGAA | 2 cut(s) | 601, 3233 |
| BpuEI | CTTGAG | 5 cut(s) | 865, 1595, 4023, 4445, 5460 |
| BpuMI | CCSGG | 2 cut(s) | 1028, 1249 |
| Bsa29I | ATCGAT | 1 cut(s) | 814 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2601 |
| BsaHI | GRCGYC | 1 cut(s) | 2194 |
| BsaI | GGTCTC | 3 cut(s) | 3933, 4331, 5572 |
| BsaWI | WCCGGW | 1 cut(s) | 4340 |
| Bse118I | RCCGGY | 1 cut(s) | 1898 |
| Bse3DI | GCAATG | 2 cut(s) | 3173, 5178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2601 |
| BseBI | CCWGG | 4 cut(s) | 3132, 3263, 4046, 4689 |
| BseCI | ATCGAT | 1 cut(s) | 814 |
| BseJI | GATNNNNATC | 1 cut(s) | 2601 |
| BseMI | GCAATG | 2 cut(s) | 3173, 5178 |
| BseMII | CTCAG | 9 cut(s) | 378, 1712, 1925, 2199, 2786, 2987, 3829, 4976, 5051 |
| BseRI | GAGGAG | 3 cut(s) | 1475, 3177, 5331 |
| BseSI | GKGCMC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 4 cut(s) | 462, 4195, 4668, 5010 |
| Bsh1236I | CGCG | 1 cut(s) | 406 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3646 |
| BshFI | GGCC | 9 cut(s) | 30, 1114, 1566, 1902, 2283, 3161, 3435, 4206, 5139 |
| BshNI | GGYRCC | 1 cut(s) | 4479 |
| BshVI | ATCGAT | 1 cut(s) | 814 |
| BsiEI | CGRYCG | 1 cut(s) | 3646 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3385 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1193 |
| BsiSI | CCGG | 4 cut(s) | 1028, 1248, 1899, 4341 |
| BslFI | GGGAC | 5 cut(s) | 1399, 1622, 2092, 2992, 4402 |
| BsmAI | GTCTC | 8 cut(s) | 1498, 1960, 2233, 2742, 3933, 4331, 4536, 5572 |
| BsmFI | GGGAC | 5 cut(s) | 1399, 1622, 2092, 2992, 4402 |
| BsmI | GAATGC | 2 cut(s) | 321, 3764 |
| BsnI | GGCC | 9 cut(s) | 30, 1114, 1566, 1902, 2283, 3161, 3435, 4206, 5139 |
| Bso31I | GGTCTC | 3 cut(s) | 3933, 4331, 5572 |
| BsoBI | CYCGRG | 1 cut(s) | 1193 |
| Bsp119I | TTCGAA | 2 cut(s) | 601, 3233 |
| Bsp120I | GGGCCC | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 3 cut(s) | 32, 2691, 3385 |
| Bsp1407I | TGTACA | 1 cut(s) | 3325 |
| Bsp19I | CCATGG | 3 cut(s) | 1455, 1650, 3430 |
| BspACI | CCGC | 4 cut(s) | 1186, 1640, 3880, 4384 |
| BspANI | GGCC | 9 cut(s) | 30, 1114, 1566, 1902, 2283, 3161, 3435, 4206, 5139 |
| BspCNI | CTCAG | 9 cut(s) | 377, 1713, 1924, 2198, 2787, 2988, 3828, 4975, 5050 |
| BspDI | ATCGAT | 1 cut(s) | 814 |
| BspFNI | CGCG | 1 cut(s) | 406 |
| BspHI | TCATGA | 3 cut(s) | 1294, 2620, 4333 |
| BspMAI | CTGCAG | 2 cut(s) | 4450, 5620 |
| BspMI | ACCTGC | 3 cut(s) | 94, 4060, 5609 |
| BspPI | GGATC | 7 cut(s) | 710, 1016, 2156, 3819, 4109, 4582, 4942 |
| BspQI | GCTCTTC | 1 cut(s) | 459 |
| BspT104I | TTCGAA | 2 cut(s) | 601, 3233 |
| BspT107I | GGYRCC | 1 cut(s) | 4479 |
| BspTI | CTTAAG | 2 cut(s) | 3679, 3701 |
| BspTNI | GGTCTC | 3 cut(s) | 3933, 4331, 5572 |
| BsrDI | GCAATG | 2 cut(s) | 3173, 5178 |
| BsrFI | RCCGGY | 1 cut(s) | 1898 |
| BsrGI | TGTACA | 1 cut(s) | 3325 |
| BssAI | RCCGGY | 1 cut(s) | 1898 |
| BssNI | GRCGYC | 1 cut(s) | 2194 |
| Bst2UI | CCWGG | 4 cut(s) | 3132, 3263, 4046, 4689 |
| Bst6I | CTCTTC | 6 cut(s) | 237, 459, 594, 1651, 2541, 4074 |
| BstACI | GRCGYC | 1 cut(s) | 2194 |
| BstAFI | CTTAAG | 2 cut(s) | 3679, 3701 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3179, 3620 |
| BstAUI | TGTACA | 1 cut(s) | 3325 |
| BstBI | TTCGAA | 2 cut(s) | 601, 3233 |
| BstC8I | GCNNGC | 9 cut(s) | 852, 2095, 2198, 2281, 2856, 3180, 3621, 4204, 5589 |
| BstDSI | CCRYGG | 3 cut(s) | 1455, 1650, 3430 |
| BstFNI | CGCG | 1 cut(s) | 406 |
| BstH2I | RGCGCY | 1 cut(s) | 2127 |
| BstHHI | GCGC | 4 cut(s) | 406, 709, 2126, 5022 |
| BstMAI | GTCTC | 8 cut(s) | 1498, 1960, 2233, 2742, 3933, 4331, 4536, 5572 |
| BstMCI | CGRYCG | 1 cut(s) | 3646 |
| BstNI | CCWGG | 4 cut(s) | 3132, 3263, 4046, 4689 |
| BstNSI | RCATGY | 6 cut(s) | 854, 1392, 2858, 3723, 4183, 5189 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1181, 4254 |
| BstSCI | CCNGG | 6 cut(s) | 1026, 1247, 3130, 3261, 4044, 4687 |
| BstSFI | CTRYAG | 6 cut(s) | 486, 1887, 2637, 3345, 4446, 5616 |
| BstSLI | GKGCMC | 1 cut(s) | 32 |
| BstUI | CGCG | 1 cut(s) | 406 |
| BstV2I | GAAGAC | 5 cut(s) | 219, 2529, 3027, 3597, 5056 |
| BstX2I | RGATCY | 8 cut(s) | 94, 715, 2161, 2992, 3811, 4574, 4947, 5099 |
| BstYI | RGATCY | 8 cut(s) | 94, 715, 2161, 2992, 3811, 4574, 4947, 5099 |
| Bsu15I | ATCGAT | 1 cut(s) | 814 |
| BsuI | GTATCC | 4 cut(s) | 229, 244, 1632, 3523 |
| BsuRI | GGCC | 9 cut(s) | 30, 1114, 1566, 1902, 2283, 3161, 3435, 4206, 5139 |
| BsuTUI | ATCGAT | 1 cut(s) | 814 |
| BtgI | CCRYGG | 3 cut(s) | 1455, 1650, 3430 |
| BtsI | GCAGTG | 2 cut(s) | 671, 3614 |
| BveI | ACCTGC | 3 cut(s) | 94, 4060, 5609 |
| Cac8I | GCNNGC | 9 cut(s) | 852, 2095, 2198, 2281, 2856, 3180, 3621, 4204, 5589 |
| CaiI | CAGNNNCTG | 5 cut(s) | 827, 901, 959, 1106, 3137 |
| CciI | TCATGA | 3 cut(s) | 1294, 2620, 4333 |
| CfoI | GCGC | 4 cut(s) | 406, 709, 2126, 5022 |
| Cfr10I | RCCGGY | 1 cut(s) | 1898 |
| Cfr13I | GGNCC | 6 cut(s) | 28, 29, 865, 3125, 4352, 5027 |
| ClaI | ATCGAT | 1 cut(s) | 814 |
| CseI | GACGC | 1 cut(s) | 2202 |
| Csp6I | GTAC | 9 cut(s) | 2043, 2802, 3135, 3326, 3371, 4480, 4879, 5205, 5247 |
| CviQI | GTAC | 9 cut(s) | 2043, 2802, 3135, 3326, 3371, 4480, 4879, 5205, 5247 |
| DraI | TTTAAA | 4 cut(s) | 2032, 2503, 4080, 4471 |
| DraIII | CACNNNGTG | 1 cut(s) | 3620 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2066 |
| DriI | GACNNNNNGTC | 3 cut(s) | 3703, 4309, 4344 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2066 |
| EaeI | YGGCCR | 4 cut(s) | 2281, 3159, 4204, 5137 |
| Eam1104I | CTCTTC | 6 cut(s) | 237, 459, 594, 1651, 2541, 4074 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 3703, 4309, 4344 |
| EarI | CTCTTC | 6 cut(s) | 237, 459, 594, 1651, 2541, 4074 |
| Eco147I | AGGCCT | 1 cut(s) | 1566 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 2691 |
| Eco31I | GGTCTC | 3 cut(s) | 3933, 4331, 5572 |
| Eco32I | GATATC | 1 cut(s) | 2923 |
| Eco47I | GGWCC | 4 cut(s) | 865, 3125, 4352, 5027 |
| Eco57I | CTGAAG | 7 cut(s) | 261, 804, 1581, 1728, 3041, 3050, 4055 |
| Eco88I | CYCGRG | 1 cut(s) | 1193 |
| EcoO109I | RGGNCCY | 4 cut(s) | 28, 29, 3125, 5027 |
| EcoRI | GAATTC | 1 cut(s) | 4402 |
| EcoRII | CCWGG | 4 cut(s) | 3130, 3261, 4044, 4687 |
| EcoRV | GATATC | 1 cut(s) | 2923 |
| EcoT22I | ATGCAT | 1 cut(s) | 4275 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 2691 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 737, 769, 970, 1002 |
| FaqI | GGGAC | 5 cut(s) | 1399, 1622, 2092, 2992, 4402 |
| FauI | CCCGC | 2 cut(s) | 1647, 4377 |
| FauNDI | CATATG | 3 cut(s) | 2718, 3377, 4253 |
| FbaI | TGATCA | 3 cut(s) | 1962, 3541, 3685 |
| FblI | GTMKAC | 3 cut(s) | 351, 1062, 3642 |
| FriOI | GRGCYC | 2 cut(s) | 32, 2691 |
| GlaI | GCGC | 4 cut(s) | 405, 708, 2125, 5021 |
| GsuI | CTGGAG | 1 cut(s) | 3114 |
| HaeII | RGCGCY | 1 cut(s) | 2127 |
| HaeIII | GGCC | 9 cut(s) | 30, 1114, 1566, 1902, 2283, 3161, 3435, 4206, 5139 |
| HapII | CCGG | 4 cut(s) | 1028, 1248, 1899, 4341 |
| HgaI | GACGC | 1 cut(s) | 2202 |
| HhaI | GCGC | 4 cut(s) | 406, 709, 2126, 5022 |
| Hin1I | GRCGYC | 1 cut(s) | 2194 |
| Hin6I | GCGC | 4 cut(s) | 404, 707, 2124, 5020 |
| HinP1I | GCGC | 4 cut(s) | 404, 707, 2124, 5020 |
| HincII | GTYRAC | 6 cut(s) | 352, 618, 1846, 3053, 3643, 4086 |
| HindII | GTYRAC | 6 cut(s) | 352, 618, 1846, 3053, 3643, 4086 |
| HindIII | AAGCTT | 5 cut(s) | 694, 1146, 1509, 1832, 2091 |
| HpaI | GTTAAC | 1 cut(s) | 618 |
| HpaII | CCGG | 4 cut(s) | 1028, 1248, 1899, 4341 |
| HphI | GGTGA | 9 cut(s) | 701, 1351, 2445, 4124, 5075, 5132, 5210, 5333, 5393 |
| Hpy99I | CGWCG | 1 cut(s) | 4307 |
| HpyCH4IV | ACGT | 5 cut(s) | 467, 2842, 3547, 3670, 4189 |
| HpySE526I | ACGT | 5 cut(s) | 467, 2842, 3547, 3670, 4189 |
| Hsp92I | GRCGYC | 1 cut(s) | 2194 |
| HspAI | GCGC | 4 cut(s) | 404, 707, 2124, 5020 |
| KpnI | GGTACC | 1 cut(s) | 4483 |
| Ksp22I | TGATCA | 3 cut(s) | 1962, 3541, 3685 |
| KspAI | GTTAAC | 1 cut(s) | 618 |
| LguI | GCTCTTC | 1 cut(s) | 459 |
| LmnI | GCTCC | 6 cut(s) | 162, 1488, 2236, 3019, 4387, 5416 |
| MaeII | ACGT | 5 cut(s) | 467, 2842, 3547, 3670, 4189 |
| MaeIII | GTNAC | 8 cut(s) | 1088, 1277, 1391, 1442, 2511, 3913, 5042, 5110 |
| MfeI | CAATTG | 2 cut(s) | 3534, 3609 |
| MflI | RGATCY | 8 cut(s) | 94, 715, 2161, 2992, 3811, 4574, 4947, 5099 |
| MhlI | GDGCHC | 3 cut(s) | 32, 2691, 3385 |
| MlsI | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| MluNI | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| MlyI | GAGTC | 9 cut(s) | 563, 892, 1058, 1762, 2095, 2165, 3611, 4937, 5360 |
| MmeI | TCCRAC | 6 cut(s) | 524, 892, 2277, 2449, 2472, 3463 |
| Mox20I | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| Mph1103I | ATGCAT | 1 cut(s) | 4275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4696 |
| MscI | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| MslI | CAYNNNNRTG | 4 cut(s) | 326, 1748, 4278, 5061 |
| Msp20I | TGGCCA | 4 cut(s) | 2283, 3161, 4206, 5139 |
| MspCI | CTTAAG | 2 cut(s) | 3679, 3701 |
| MspI | CCGG | 4 cut(s) | 1028, 1248, 1899, 4341 |
| MspR9I | CCNGG | 6 cut(s) | 1028, 1249, 3132, 3263, 4046, 4689 |
| MunI | CAATTG | 2 cut(s) | 3534, 3609 |
| Mva1269I | GAATGC | 2 cut(s) | 321, 3764 |
| MvaI | CCWGG | 4 cut(s) | 3132, 3263, 4046, 4689 |
| MvnI | CGCG | 1 cut(s) | 406 |
| NciI | CCSGG | 2 cut(s) | 1028, 1249 |
| NcoI | CCATGG | 3 cut(s) | 1455, 1650, 3430 |
| NdeI | CATATG | 3 cut(s) | 2718, 3377, 4253 |
| NmeAIII | GCCGAG | 1 cut(s) | 5513 |
| NmuCI | GTSAC | 2 cut(s) | 1277, 1442 |
| NsiI | ATGCAT | 1 cut(s) | 4275 |
| NspI | RCATGY | 6 cut(s) | 854, 1392, 2858, 3723, 4183, 5189 |
| NspV | TTCGAA | 2 cut(s) | 601, 3233 |
| PaeI | GCATGC | 2 cut(s) | 854, 2858 |
| PaeR7I | CTCGAG | 1 cut(s) | 1193 |
| PagI | TCATGA | 3 cut(s) | 1294, 2620, 4333 |
| PaqCI | CACCTGC | 1 cut(s) | 5609 |
| PceI | AGGCCT | 1 cut(s) | 1566 |
| PciI | ACATGT | 3 cut(s) | 1388, 3719, 5185 |
| PciSI | GCTCTTC | 1 cut(s) | 459 |
| PctI | GAATGC | 2 cut(s) | 321, 3764 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4696 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 333, 506, 3137 |
| PfoI | TCCNGGA | 1 cut(s) | 1247 |
| PleI | GAGTC | 9 cut(s) | 562, 892, 1058, 1761, 2094, 2165, 3610, 4936, 5359 |
| PpsI | GAGTC | 9 cut(s) | 562, 892, 1058, 1761, 2094, 2165, 3610, 4936, 5359 |
| PpuMI | RGGWCCY | 2 cut(s) | 3125, 5027 |
| PscI | ACATGT | 3 cut(s) | 1388, 3719, 5185 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1181, 4254 |
| PshBI | ATTAAT | 4 cut(s) | 6, 134, 1155, 3846 |
| PsiI | TTATAA | 2 cut(s) | 1239, 4856 |
| Psp1406I | AACGTT | 2 cut(s) | 3547, 4189 |
| Psp5II | RGGWCCY | 2 cut(s) | 3125, 5027 |
| Psp6I | CCWGG | 4 cut(s) | 3130, 3261, 4044, 4687 |
| PspGI | CCWGG | 4 cut(s) | 3130, 3261, 4044, 4687 |
| PspOMI | GGGCCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 6 cut(s) | 28, 29, 865, 3125, 4352, 5027 |
| PspPPI | RGGWCCY | 2 cut(s) | 3125, 5027 |
| PstI | CTGCAG | 2 cut(s) | 4450, 5620 |
| PstNI | CAGNNNCTG | 5 cut(s) | 827, 901, 959, 1106, 3137 |
| PsuI | RGATCY | 8 cut(s) | 94, 715, 2161, 2992, 3811, 4574, 4947, 5099 |
| RsaI | GTAC | 9 cut(s) | 2044, 2803, 3136, 3327, 3372, 4481, 4880, 5206, 5248 |
| RsaNI | GTAC | 9 cut(s) | 2043, 2802, 3135, 3326, 3371, 4480, 4879, 5205, 5247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 326, 1748, 4278, 5061 |
| SalI | GTCGAC | 2 cut(s) | 350, 3641 |
| SapI | GCTCTTC | 1 cut(s) | 459 |
| Sau96I | GGNCC | 6 cut(s) | 28, 29, 865, 3125, 4352, 5027 |
| ScaI | AGTACT | 1 cut(s) | 5248 |
| SchI | GAGTC | 9 cut(s) | 563, 892, 1058, 1762, 2095, 2165, 3611, 4937, 5360 |
| ScrFI | CCNGG | 6 cut(s) | 1028, 1249, 3132, 3263, 4046, 4689 |
| SduI | GDGCHC | 3 cut(s) | 32, 2691, 3385 |
| SfcI | CTRYAG | 6 cut(s) | 486, 1887, 2637, 3345, 4446, 5616 |
| Sfr274I | CTCGAG | 1 cut(s) | 1193 |
| SfuI | TTCGAA | 2 cut(s) | 601, 3233 |
| SinI | GGWCC | 4 cut(s) | 865, 3125, 4352, 5027 |
| SlaI | CTCGAG | 1 cut(s) | 1193 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 326, 1748, 4278, 5061 |
| SmlI | CTYRAG | 8 cut(s) | 844, 1193, 1574, 3679, 3701, 4038, 4460, 5475 |
| SmoI | CTYRAG | 8 cut(s) | 844, 1193, 1574, 3679, 3701, 4038, 4460, 5475 |
| SpeI | ACTAGT | 1 cut(s) | 254 |
| SphI | GCATGC | 2 cut(s) | 854, 2858 |
| SseBI | AGGCCT | 1 cut(s) | 1566 |
| SsiI | CCGC | 4 cut(s) | 1186, 1640, 3880, 4384 |
| SspI | AATATT | 1 cut(s) | 1420 |
| StuI | AGGCCT | 1 cut(s) | 1566 |
| StyD4I | CCNGG | 6 cut(s) | 1026, 1247, 3130, 3261, 4044, 4687 |
| TaiI | ACGT | 5 cut(s) | 470, 2845, 3550, 3673, 4192 |
| TatI | WGTACW | 4 cut(s) | 3325, 4878, 5204, 5246 |
| TseFI | GTSAC | 2 cut(s) | 1277, 1442 |
| Tsp45I | GTSAC | 2 cut(s) | 1277, 1442 |
| TspGWI | ACGGA | 5 cut(s) | 1041, 1579, 3106, 5117, 5129 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 333, 506, 3137 |
| Vha464I | CTTAAG | 2 cut(s) | 3679, 3701 |
| VpaK11BI | GGWCC | 4 cut(s) | 865, 3125, 4352, 5027 |
| VspI | ATTAAT | 4 cut(s) | 6, 134, 1155, 3846 |
| XbaI | TCTAGA | 3 cut(s) | 305, 2527, 3628 |
| XceI | RCATGY | 6 cut(s) | 854, 1392, 2858, 3723, 4183, 5189 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 465, 507, 3437, 4102, 4907 |
| XhoI | CTCGAG | 1 cut(s) | 1193 |
| XmiI | GTMKAC | 3 cut(s) | 351, 1062, 3642 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4696 |
| ZrmI | AGTACT | 1 cut(s) | 5248 |
| Zsp2I | ATGCAT | 1 cut(s) | 4275 |