RchiOBHm_Chr2g0149261

AAA domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
67121899 .. 67136683
14785 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51867

Sequence Viewer

Length: 6969 bp
ATGGCCAAGAAGCTGTGCACGAGAAGAGAGCTACTGGACCGATGGAGAGGCATTGAGGAAGAAGCAGACGAAGACGACGATCGCATTGAGCCTTCTAAACGTCACCGTCTTCACAAGAATAAAGAACAATGGTTTGCAGATACATTTAATTTCTTGATCTGTTTGCCAAAAGAAAATCATATTTGGTGTGGGTCATGGGATTTAATGGGGCCCCTTCTGGAGACATTTTACAATTATTTTAATGATGAGCATAGTGATTCTCCTCTTAGACAACTATGGAGGAGAATCTCTGAGGAAATGCGGCAATGTATCCAGTGCATTTCCCAGCATTATCAGACCCAAGAAATGTATAGCACGGAATATGAGTCGAGTTCTATTGGACCCCTTCTGGATGTTTTGCGAAGGCTTGATGAGGAAAGGGTGACACAACACTTGATAGAGATGAATACTACATTAGCTCGAAAGGAATATGATCCTGCCCGTGATAATGCTGAAGTTGTTAGTGTCATGTATGAGGTTTTAATGTTCCCTGTACTGTTGGATGATGGGTCCCTATTCATTGAATTTGAAAAATTTATCGAAGCAGTTGATAATATGCATGAACTGGCCTTGGCTGGACAGCAGCAGTTTCCGGGTGTTTATGCATTATTTTTCTTCAAAAGAAGAGTGCGCTCTGTTGGTCATCGTTTAGCTGGTTCAATGGGAAAACTGAGGAGAGCAGTAGACTTGGAACCCTTGCAGCCTTTGCTTAAAAAATTCATTGGCATGTTGGAAACAGAAGTGTTACCATCAACTTTGAATACTTCAAGGGCCAGAGTGCAGCTGGACCGCACATCCATATGGATAGGAGTCAAAACTCTGCTTGGGTTCTTAGAACCTCCAGCTTTGGAAGAAGGGATATTAGAACGCTATCCCATTTTCCTTGATATTGTCCTCAATCATATTAGTGGTGATTCATCAGAGTTCTCTCATGCAGTTGCTTGCTTGAGAAAAATCTTTGAAATGCTCGGGTGTAAGCTCTGGTTGAGGTCTACATTGGCTCCTGGCGTGATGCGTGATACTCTACTGGGTCAGTGTTTCCATACTCGAAACGAGAAAAGCCATAAGGACATATTTGATCTTTTCCAGCCTTTTCTGCAGTCTCTTGAAGCTTTGCAAGATGGGGAACATGAAAAGCAGCGCAGGCATTTTCTGTATTTTCTCCTCCATCAGGTGACTGTGAGCAGTAACTTCAGTGCCTTAACAAGACAAAGGGCTTGCCAGATATCGCTGCTTATTGTACATCGAGGTTACACAATGAACCCACCCTGTCCTCCTTATGAATGTGCACATATGTGGGGCCCTTCGCTTGTGTCATCTCTGAAAGATTCTTTGCTTCACAGCTCACTAAGGCAACCTGCCTTAGATCTCATACAAACTATCATAGTGTCTGATGCTGCTGCATTAATAAGTTCAGTGCTGAATACGCACCCACCCCTTAGTTCTGGAAAAAACTTGTCTTTTCAGTTGAATGATGAAGATGAAGACGGGGCTCCATTATCACTGGATACTGAAGAGAAGGATGCTAGTTCTTGGAGTGAATTTAGCTTACAGGGCAAAATTACATCTCGGGAATCTAGAGAGTGGATGTGCATTCCCATGCTATGGATTGATGTTCTTGTCGACACCAATCTCTCAGTCCTTCCAATATCATTTTCCAAGGCTGTTTTCTGGGCGCGATCTCGTTTTTCTATGGTAGAACCAGAGAGTAGTGCAGAAATGGCTCTTCCAGTCAGAACCTGGCTTTCATCCTCTGCTACAGAAATAGCTCCAACCTTCGGGTGGAAGGTTCCTACTGGTTCTGACGATGGGGGAGAGGGGAAGGAGTCAAAAAACTCGATCAAAGTTTCAACAATGCCTCTTCCTTTAGTTCGAATGTTTAATAGGTTAACAGCACATTTTGTGGTTCAAGTGGGGCAGGGGGAACTTTGTAAGCAGTGGACATGGGAACCAAGGATGGGTGAAAGCTTGTTCCTTTCGCTTATAGATCCTGATGATAATGTGAGGCAATTTGGCAAGTGTATCTTGGAACAGGTTTCCAATACAAGAGGTCTTTCTTGTGGTTTGAATTTCCTTTGTTCTCATCGATCTTCAGTGTCCGCTGTCTTTTTTGGCTTGAGACATGCCGTGAAACTGGTCCAACTCGATACTGTTGTATTAAATTTTCAGACTCTGCATCATTTTTTCTTTGTTCTTCGCAAATTGCTTAATGAGGGGGATATTCCAGAATCTGACCACTTAAAAATGGCAAGGTTATCTTCCCAAGGTGGATTTCTTAGGCAGCCAGTCTTTGATCCACCGGCTGTGAATGTCAGTGGGCATCCGTCAAATGTAGACTCAAAATTACTGGGAAGGTTTTGTTACTTGCTATCAGAAACTGCATGGCCTTCCATCTGTGGGTGCTTATTAGAAGGAAAAGCTTTTATTAATAACAGTGTTTGTCAGATGACTTGTGTCCGCATACTCGAGATCATCCCTTGTGTGTTTGAACGACTATACTTTTTTAGTTATAAACCGTCCAGGATTTCTGGAACATTGGCAAATACTTGTGACTTCTCATGGCTTCATGATATTATGGATTGGGGAAAGTCATCACTTAAAGTTGTAGTCATATACTGGCAACGAACAATCACCTCCTTGCTCAAATTGCTGAAAGGGACACGTAACAGTGCTATGGCATCGACGATCAACATTATCGAAAAAATCATTTCATGTGACTGTGTTTCCATGGATGAATTGATGGAACAAGTGTCGCTCCTCTCTGTCTCTTTGTCGAAGGAAGCTTCCTCTAGTATTGGAAAGACCAACATCCAGTCAAAGGGTTTATTCCCTGAAGGCCTCTCTCTTGAGAAGAAGTATTCTGTTCCAGATGTGAAAAACTTGTCCATTGAGGATCCAGATGTTCAAGTCCCGCACTCTTCCATGGAGGATAACAGAAAGCATAGTAATAATATGATTGTCCTTTCTGATGATGAAACTGAAGTAGTTTTACCGAGTGAGGCAGTTTTATCTGATACTAAGATGAGTCTGTGTATGATGGATGACAAGACAGTGGCTTCTACTGTTGATAAAAGCACTTCATATAATGATTCTGTAAAGAAGAAGCTTTCTGGTGTTGACACTTCCAAGGCTTTGACTGCTTACCAGAAAATAGATGCTACAGATGCTACTGGCCTTGCTTCTCAGAAACAGGATTCTGATAGATCAATAGAAAAACAGCAACCTGTCTCTTTGATCAAATCAAAAGATGTAGATAATAGTAGGAAAGAAATAATCCCTGATTGCAATATAAATGATTCTTTTAAATTCGAGGGTACAGTTAAGTCATCTGACAATGCTGTCAGTTCCAAAATGTTGAGTCAAGCTTGCAACAATATGTCCCTGAAAGAAGGTGGCGCTTTGTTGAAGCAGATGGTATGTGATGACGAAGAAGATCCATTAGACTCTGCTCTCAACTCAGTCAGACGCCAGCAGTCATTTGTGCCAAAGCCAAGCATTTCTGCTCCCAAGAGACAACTCATTCAGCTTCAATCTCCTTCTCAAAATAGAGCTGGCCATTTACATAGGTTGGAAGGTAGAAAAAGGTTCCAGCCTCCAAGGCTTGATGAATGGTATAGACCTATATTAGAATTGGATTACTTTGCACTGGTGGGAGTAGCGTCAGCAAGTGAAAATGATAAACATAAAGTTGCAAAATTAAAGGAGGTTCCTGTGAATTTCCAATCACCTGAACAGTATACTGGAATTTTTTGTCCATTAGTGTTGGAGGAATTTAAAGCACAGTTACATAGTTCGTTTCTAGAGATGTCTTCATGGGAAGAGGTGTATTTTGGTAGCTTGTCAGTGCTTTCAGTTGAAAGAATTGATGATTTTCACCTTGTTCGCTTTGCTCATGATGTCAATGATTCTATAGCATCAAGCAGCTTTTCAGAAAATGACCTTGTATTGCTAACAAAAGAGCCCCCACAAAAATCTTCCCATGATGTTCATATGCTCGGAAAGGTGGAGAGGCGTGAGAGAGACAATAAAAGGAGATTAAATATATTACTCATCAGGTTCTATCTTCTGAGTGGTACTTCACGCTTACATCAAGCCAGAAGGAACCTCCTTGAACGTAGTAAATGGCATGCAAGTCGTGTTATGAACATAACATCTCAACTTCGAGAGTTTCAGGCATTATCATTGATAAAGGATATCCCCTTGCTTCCGATTATTTTGAAGCCTGTCAATGATTCTCTTGACTCTAGTGTAAGCAAGGAAGTAGATCTGAGTAAATTGTCCCTACCCCTGGAGCGAATACTGAAGTCTTCGTTTAATGACAGTCAACTTCAGGCAATTAGTATTGCTACTGCAACACCTAGATGGAAGAAAGATTTCAATTTATCTCTTATTCAGGGTCCTCCAGGTACCGGTAAGACAAGAACTATTCTGGCCATCGTCAGTGCATTGCTTGCTTCTCCTCCACAGAAGATAGATTCTGAAAAGAAATTTCTTGATAGCAGTTCGAAACGAATTTCAGTTCCTAAGATTAACCAGGCTGCTGCTATCGCAAGGGCGTGGCAGGATGCAGCCTTGGCTAGACAACTGAATGAGGATGTACAGAGGAATACAAAGTCTATAGAAAGTTCCATGAGAGGTAGGGTCCTCATATGTGCTCAATCTAATGCTGCTGTTGATGAGTTAGTGTCAAGGATTTCTAGCCATGGCCTGTATGGTAGTGATGGAAAGACATATAAGCCATATCTTGTAAGGGTTGGAAATGTGAAAACAGTTCATCCAAATTCGCTCCCATTCTTTCTGGATACAATTGTTGATCAACGTTTGGCAGATGAGAGGATGAAATTGAATGATACAAAGAATGATTTGAGTTTGGAGTCTTCAATTACACTGCGTGCTAATCTAGAGAAGTTAGTCGACCGTATTAGATTCTATGAAGCCAAACGTGCTAACTTAAGTGATCGTAATACTGACCTTAAGTCCTCGGATGATACATGTAAGGAGGATGATGGGAAGGAAATGTCTGATGCAGAAATAGCATTCAAGTTGAGAAAACTGTATGAGGAAAAGAGGCAAATATATAAGGATCTCAGTTCTGTTCAGCAGCAGGAGAAGAAAATTAATGAAGAAATCAAAGGACTTAGATATAAACTGCGGAAGTCTATACTAAGAGAAGCTGAAATAGTGGTAACTACGCTAAGTGGCTGTGGGGGAGACCTTTATGGTGTGTGTTCTGAATCTATGTCAAGTCATAAGTTTAGCAGTCCATCTGAACATACCCTTTTTGATGCTGTTGTTATTGATGAAGCTGCTCAAGCCCTGGAACCTGCAACTCTGATTCCTCTTCAGCTTTTAAAGTCAACTGGAACCAAATGTATCATGGTTGGTGATCCAAAGCAGCTTCCTGCAACAGTTCTCTCAAATGTTGCTAGTAAATTTCTATTTGAGTGCAGCATGTTTGAACGTTTACAAAGGGCTGGCCACCCTGTTATTATGCTGACCAAACAGTATAGGATGCACCCAGACATATGTCTGTTTCCTTCTATGCATTTTTATGAGAAGAAGTTGCTGAATGGCGACGATATGTCTAGCAAATCAGCACCATTTCATGAGACTGGAGGTCTTGGACCTTATATTTTTTATGATGTTATTGATGGGCGGGAGCTTCGTGGTAAGAATTCTAGTGCCATGTCCCTATATAATGAGCATGAAGCTGATGCTGCAGTTGAATTACTCAAGTTTTTAAAAAAGAGGTACCCTTCTGAATTTCATGGTGGAAGAATTGGCATCATAACTCCATATAAGTCTCAACTGGCACTTCTGCGTTCTCGTTTCTCTAGTGCATTTGGATCTTCTATCATAGATGATATGGAACTTAATACTGTTGATGGTTTCCAAGGTCGGGAGGTTGATATACTAATACTTTCCACTGTTAGAGCAGCAGAACCAAGCTCTGCTGCACCTGGAAACAATTCCAGCAGTATTGGATTTGTTGCTGATGTTAGAAGGATGAATGTTGCTCTGACGAGAGCCAAACTCTCACTTTGGATTTTGGGAAATGCAAGGACTTTGCAGACGAACCAAAACTGGGCTGCTCTTGTAAAAGATGCTAGAAAGAGGAATTTGGTTATAACAACTAAAATGCCTTACAATTACACATTTGAAACAGCTCTCCAGAAAAATTCTGGCAATCATTTATTAGAGTCGCAGCGTAGTCAGAAGATCCATGATGCTACTCAGCATGCGAAAAGAACTGATCGAAGTGCAGATGAAGCACTTGACAGAAGAACAAAGCGCATGGGTCCTGTTCCTCAGAGTAACAGAAGACTTCATGGAGGTGAAAAAGATGTTTCTGGAACTAAAGAGGATGTCAGATCTGAAAATGTAACGGCTGGTGAAATCCATCCACTTGGCCACAGTAAAGTTTCCAAGGATGTTGGGTCTGCAATGCCACAAAAACATGTAATGGATGGTGAAAGTACAGATAAAGAGAGCAGAAAAAGGAAAAATAGTTTGGAGAATACTCAAATGGGTAAAAGAAAAGTTAAATTTGAAAATTCAAAGAGAGATGCAGATAACTCTGAACAAAGAGGAGGTGATGGGCTTCGTCCTATTAAAATGCAAGAGTCGAAAAGAGCTAAGAAAATTTCCGAGGGTGATAGAAGCCAGACAAATCAGGTTTCAGCTCCCACAAATCAAATGAAGGATGCAAGTGATGGAGGTAGAGCTTCAAATCAATCTGGAACTTCTCAAGATTTAATTGCAAAAAGGAAACAACAGCGTGAAGCTGTTGATGCTATTCTTTACTCGGCTCTGATTCCTTCAAAGAGTTCCAAATCTGAAACATCAATGAGACCTGTGCCTGCCAAAAGACCTCTATCTTCCTCAACTGCAGGTGGTGGCATAAAACCAGCAAAGACAAGGAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2322

Amino Acids

261.23

Weight (kDa)

8.31

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEN1_barrel PF23576 1291 - 1393 1.4e-17 Helicase SEN1 beta-barrel domain
AAA_11 PF13086 1451 - 1820 3.6e-59 AAA domain
AAA_12 PF13087 1828 - 2033 9.1e-59 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2550, 6167
AarI CACCTGC 1 cut(s) 6920
AasI GACNNNNNNGTC 1 cut(s) 3377
Acc36I ACCTGC 3 cut(s) 1405, 5371, 6920
Acc65I GGTACC 2 cut(s) 4445, 5790
AccB1I GGYRCC 2 cut(s) 4445, 5790
AccB7I CCANNNNNTGG 1 cut(s) 1644
AccI GTMKAC 6 cut(s) 723, 1031, 1662, 2373, 3776, 4953
AccII CGCG 1 cut(s) 1717
AciI CCGC 7 cut(s) 301, 829, 2139, 2497, 2951, 5191, 5695
AclI AACGTT 2 cut(s) 4858, 5500
AcoI YGGCCR 5 cut(s) 3, 3592, 4470, 5515, 6448
AcuI CTGAAG 9 cut(s) 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5366
AcyI GRCGYC 1 cut(s) 3505
AdeI CACNNNGTG 1 cut(s) 4931
AfaI GTAC 8 cut(s) 534, 1281, 3355, 4114, 4447, 4638, 5792, 6517
AflII CTTAAG 2 cut(s) 4990, 5012
AflIII ACRYGT 3 cut(s) 2699, 5030, 6496
AgeI ACCGGT 1 cut(s) 4448
AhdI GACNNNNNGTC 3 cut(s) 5014, 5620, 5655
AjnI CCWGG 8 cut(s) 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
AjuI GAANNNNNNNTTGG 8 cut(s) 1678, 1691, 1710, 1723, 2295, 2327, 6533, 6565
AleI CACNNNNGTG 1 cut(s) 1333
Alw21I GWGCWC 3 cut(s) 20, 1330, 4696
Alw44I GTGCAC 2 cut(s) 16, 1326
AlwNI CAGNNNCTG 4 cut(s) 1779, 2212, 2270, 2417
Ama87I CYCGRG 3 cut(s) 1007, 1608, 2504
ApaI GGGCCC 2 cut(s) 213, 1343
ApaLI GTGCAC 2 cut(s) 16, 1326
AseI ATTAAT 3 cut(s) 1445, 2466, 5157
AsiGI ACCGGT 1 cut(s) 4448
Asp700I GAANNNNTTC 2 cut(s) 4412, 6007
Asp718I GGTACC 2 cut(s) 4445, 5790
AspLEI GCGC 5 cut(s) 672, 1182, 1717, 3437, 6333
AsuC2I CCSGG 1 cut(s) 633
AsuII TTCGAA 2 cut(s) 1912, 4544
AvaI CYCGRG 3 cut(s) 1007, 1608, 2504
AvaII GGWCC 9 cut(s) 37, 380, 549, 826, 2176, 4436, 4681, 5663, 6338
BaeGI GKGCMC 4 cut(s) 20, 213, 1330, 1343
BaeI ACNNNNGTAYC 4 cut(s) 2178, 2211, 4833, 4866
BalI TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
BamHI GGATCC 1 cut(s) 2932
BanI GGYRCC 2 cut(s) 4445, 5790
BanII GRGCYC 4 cut(s) 213, 1343, 1534, 4002
BarI GAAGNNNNNNTAC 2 cut(s) 3012, 3044
BauI CACGAG 1 cut(s) 19
BbsI GAAGAC 7 cut(s) 78, 101, 1530, 3840, 4338, 4908, 6367
Bbv12I GWGCWC 3 cut(s) 20, 1330, 4696
BceAI ACGGC 2 cut(s) 2150, 6441
BcgI CGANNNNNNTGC 2 cut(s) 4154, 4188
BciT130I CCWGG 8 cut(s) 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
BciVI GTATCC 3 cut(s) 320, 1540, 4834
BclI TGATCA 2 cut(s) 3273, 4852
BcnI CCSGG 1 cut(s) 633
BfmI CTRYAG 7 cut(s) 1136, 1797, 3198, 3948, 4656, 5757, 6927
BfoI RGCGCY 1 cut(s) 3438
BfrI CTTAAG 2 cut(s) 4990, 5012
BfuAI ACCTGC 3 cut(s) 1405, 5371, 6920
BfuI GTATCC 3 cut(s) 320, 1540, 4834
BglI GCCNNNNNGGC 1 cut(s) 3637
BglII AGATCT 3 cut(s) 1405, 4303, 6410
Bme1390I CCNGG 9 cut(s) 633, 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
Bme18I GGWCC 9 cut(s) 37, 380, 549, 826, 2176, 4436, 4681, 5663, 6338
BmeRI GACNNNNNGTC 3 cut(s) 5014, 5620, 5655
BmeT110I CYCGRG 3 cut(s) 1007, 1608, 2504
BmrFI CCNGG 9 cut(s) 633, 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
BmrI ACTGGG 3 cut(s) 1076, 2396, 6133
BmuI ACTGGG 3 cut(s) 1076, 2396, 6133
BoxI GACNNNNGTC 2 cut(s) 2492, 5565
BpiI GAAGAC 7 cut(s) 78, 101, 1530, 3840, 4338, 4908, 6367
BplI GAGNNNNNCTC 2 cut(s) 6057, 6089
BpmI CTGGAG 6 cut(s) 239, 864, 4349, 4425, 5673, 6194
Bpu14I TTCGAA 2 cut(s) 1912, 4544
BpuEI CTTGAG 6 cut(s) 1006, 2176, 2906, 5334, 5756, 6771
BpuMI CCSGG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 2125
BsaAI YACGTR 1 cut(s) 2702
BsaHI GRCGYC 1 cut(s) 3505
BsaI GGTCTC 2 cut(s) 5244, 6883
BsaWI WCCGGW 1 cut(s) 4448
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bse118I RCCGGY 2 cut(s) 2338, 4448
Bse3DI GCAATG 3 cut(s) 311, 4484, 6489
BseBI CCWGG 8 cut(s) 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
BseCI ATCGAT 1 cut(s) 2125
BseMI GCAATG 3 cut(s) 311, 4484, 6489
BseRI GAGGAG 7 cut(s) 252, 295, 727, 1193, 2786, 4488, 6642
BseSI GKGCMC 4 cut(s) 20, 213, 1330, 1343
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 5 cut(s) 839, 1773, 5506, 5979, 6321
Bsh1236I CGCG 1 cut(s) 1717
Bsh1285I CGRYCG 2 cut(s) 82, 4957
BshNI GGYRCC 2 cut(s) 4445, 5790
BshTI ACCGGT 1 cut(s) 4448
BshVI ATCGAT 1 cut(s) 2125
BsiEI CGRYCG 2 cut(s) 82, 4957
BsiHKAI GWGCWC 3 cut(s) 20, 1330, 4696
BsiHKCI CYCGRG 3 cut(s) 1007, 1608, 2504
BsiSI CCGG 3 cut(s) 632, 2339, 4449
BslFI GGGAC 6 cut(s) 535, 2710, 2933, 3403, 4303, 5713
BsmFI GGGAC 6 cut(s) 535, 2710, 2933, 3403, 4303, 5713
BsmI GAATGC 2 cut(s) 1632, 5075
Bso31I GGTCTC 2 cut(s) 5244, 6883
BsoBI CYCGRG 3 cut(s) 1007, 1608, 2504
Bsp119I TTCGAA 2 cut(s) 1912, 4544
Bsp120I GGGCCC 2 cut(s) 209, 1339
Bsp1286I GDGCHC 7 cut(s) 20, 213, 1330, 1343, 1534, 4002, 4696
Bsp1407I TGTACA 2 cut(s) 1279, 4636
Bsp19I CCATGG 3 cut(s) 2766, 2961, 4741
BspACI CCGC 7 cut(s) 301, 829, 2139, 2497, 2951, 5191, 5695
BspDI ATCGAT 1 cut(s) 2125
BspFNI CGCG 1 cut(s) 1717
BspHI TCATGA 3 cut(s) 2605, 3931, 5644
BspMAI CTGCAG 3 cut(s) 1140, 5761, 6931
BspMI ACCTGC 3 cut(s) 1405, 5371, 6920
BspQI GCTCTTC 1 cut(s) 1770
BspT104I TTCGAA 2 cut(s) 1912, 4544
BspT107I GGYRCC 2 cut(s) 4445, 5790
BspTI CTTAAG 2 cut(s) 4990, 5012
BspTNI GGTCTC 2 cut(s) 5244, 6883
BsrDI GCAATG 3 cut(s) 311, 4484, 6489
BsrFI RCCGGY 2 cut(s) 2338, 4448
BsrGI TGTACA 2 cut(s) 1279, 4636
BssAI RCCGGY 2 cut(s) 2338, 4448
BssNAI GTATAC 1 cut(s) 3777
BssNI GRCGYC 1 cut(s) 3505
BssSI CACGAG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 3777
Bst2BI CACGAG 1 cut(s) 19
Bst2UI CCWGG 8 cut(s) 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
Bst6I CTCTTC 8 cut(s) 19, 658, 1548, 1770, 1905, 2962, 3852, 5385
BstACI GRCGYC 1 cut(s) 3505
BstAFI CTTAAG 2 cut(s) 4990, 5012
BstAPI GCANNNNNTGC 2 cut(s) 745, 4490
BstAUI TGTACA 2 cut(s) 1279, 4636
BstBAI YACGTR 1 cut(s) 2702
BstBI TTCGAA 2 cut(s) 1912, 4544
BstDSI CCRYGG 3 cut(s) 2766, 2961, 4741
BstENI CCTNNNNNAGG 1 cut(s) 1208
BstFNI CGCG 1 cut(s) 1717
BstH2I RGCGCY 1 cut(s) 3438
BstHHI GCGC 5 cut(s) 672, 1182, 1717, 3437, 6333
BstMCI CGRYCG 2 cut(s) 82, 4957
BstNI CCWGG 8 cut(s) 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
BstNSI RCATGY 7 cut(s) 769, 2165, 4169, 5034, 5494, 6281, 6500
BstPAI GACNNNNGTC 2 cut(s) 2492, 5565
BstSCI CCNGG 9 cut(s) 631, 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
BstSFI CTRYAG 7 cut(s) 1136, 1797, 3198, 3948, 4656, 5757, 6927
BstSLI GKGCMC 4 cut(s) 20, 213, 1330, 1343
BstUI CGCG 1 cut(s) 1717
BstV2I GAAGAC 7 cut(s) 78, 101, 1530, 3840, 4338, 4908, 6367
BstX2I RGATCY 9 cut(s) 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410
BstXI CCANNNNNNTGG 1 cut(s) 6446
BstYI RGATCY 9 cut(s) 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410
BstZ17I GTATAC 1 cut(s) 3777
Bsu15I ATCGAT 1 cut(s) 2125
BsuI GTATCC 3 cut(s) 320, 1540, 4834
BsuTUI ATCGAT 1 cut(s) 2125
BtgI CCRYGG 3 cut(s) 2766, 2961, 4741
BtsI GCAGTG 2 cut(s) 1982, 4925
BveI ACCTGC 3 cut(s) 1405, 5371, 6920
CaiI CAGNNNCTG 4 cut(s) 1779, 2212, 2270, 2417
CciI TCATGA 3 cut(s) 2605, 3931, 5644
CfoI GCGC 5 cut(s) 672, 1182, 1717, 3437, 6333
Cfr10I RCCGGY 2 cut(s) 2338, 4448
ClaI ATCGAT 1 cut(s) 2125
CseI GACGC 2 cut(s) 3513, 3687
Csp6I GTAC 8 cut(s) 533, 1280, 3354, 4113, 4446, 4637, 5791, 6516
CspAI ACCGGT 1 cut(s) 4448
CviQI GTAC 8 cut(s) 533, 1280, 3354, 4113, 4446, 4637, 5791, 6516
DraI TTTAAA 4 cut(s) 3343, 3814, 5391, 5781
DraIII CACNNNGTG 1 cut(s) 4931
DrdI GACNNNNNNGTC 1 cut(s) 3377
DriI GACNNNNNGTC 3 cut(s) 5014, 5620, 5655
DseDI GACNNNNNNGTC 1 cut(s) 3377
EaeI YGGCCR 5 cut(s) 3, 3592, 4470, 5515, 6448
Eam1104I CTCTTC 8 cut(s) 19, 658, 1548, 1770, 1905, 2962, 3852, 5385
Eam1105I GACNNNNNGTC 3 cut(s) 5014, 5620, 5655
EarI CTCTTC 8 cut(s) 19, 658, 1548, 1770, 1905, 2962, 3852, 5385
Eco147I AGGCCT 1 cut(s) 2877
Eco24I GRGCYC 4 cut(s) 213, 1343, 1534, 4002
Eco31I GGTCTC 2 cut(s) 5244, 6883
Eco32I GATATC 2 cut(s) 1266, 4234
Eco47I GGWCC 9 cut(s) 37, 380, 549, 826, 2176, 4436, 4681, 5663, 6338
Eco57I CTGAAG 9 cut(s) 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5366
Eco88I CYCGRG 3 cut(s) 1007, 1608, 2504
EcoNI CCTNNNNNAGG 1 cut(s) 1208
EcoO109I RGGNCCY 8 cut(s) 209, 210, 549, 1339, 1340, 4436, 4681, 6338
EcoRI GAATTC 1 cut(s) 5713
EcoRII CCWGG 8 cut(s) 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
EcoRV GATATC 2 cut(s) 1266, 4234
EcoT22I ATGCAT 3 cut(s) 600, 646, 5586
EcoT38I GRGCYC 4 cut(s) 213, 1343, 1534, 4002
FalI AAGNNNNNCTT 4 cut(s) 2048, 2080, 2281, 2313
FaqI GGGAC 6 cut(s) 535, 2710, 2933, 3403, 4303, 5713
FauI CCCGC 2 cut(s) 2958, 5688
FauNDI CATATG 5 cut(s) 839, 1332, 4029, 4688, 5564
FbaI TGATCA 2 cut(s) 3273, 4852
FblI GTMKAC 6 cut(s) 723, 1031, 1662, 2373, 3776, 4953
FriOI GRGCYC 4 cut(s) 213, 1343, 1534, 4002
GlaI GCGC 5 cut(s) 671, 1181, 1716, 3436, 6332
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 6 cut(s) 239, 864, 4349, 4425, 5673, 6194
HaeII RGCGCY 1 cut(s) 3438
HapII CCGG 3 cut(s) 632, 2339, 4449
HgaI GACGC 2 cut(s) 3513, 3687
HhaI GCGC 5 cut(s) 672, 1182, 1717, 3437, 6333
Hin1I GRCGYC 1 cut(s) 3505
Hin6I GCGC 5 cut(s) 670, 1180, 1715, 3435, 6331
HinP1I GCGC 5 cut(s) 670, 1180, 1715, 3435, 6331
HincII GTYRAC 6 cut(s) 1663, 1929, 3157, 4364, 4954, 5397
HindII GTYRAC 6 cut(s) 1663, 1929, 3157, 4364, 4954, 5397
HindIII AAGCTT 6 cut(s) 1149, 2005, 2457, 2820, 3143, 3402
HpaI GTTAAC 1 cut(s) 1929
HpaII CCGG 3 cut(s) 632, 2339, 4449
Hpy99I CGWCG 3 cut(s) 80, 2725, 5618
HpyCH4IV ACGT 6 cut(s) 100, 2701, 4153, 4858, 4981, 5500
HpySE526I ACGT 6 cut(s) 100, 2701, 4153, 4858, 4981, 5500
Hsp92I GRCGYC 1 cut(s) 3505
HspAI GCGC 5 cut(s) 670, 1180, 1715, 3435, 6331
KflI GGGWCCC 1 cut(s) 549
KpnI GGTACC 2 cut(s) 4449, 5794
Ksp22I TGATCA 2 cut(s) 3273, 4852
KspAI GTTAAC 1 cut(s) 1929
LguI GCTCTTC 1 cut(s) 1770
LmnI GCTCC 9 cut(s) 1045, 1537, 1813, 2799, 3547, 4330, 4830, 5698, 6727
MaeII ACGT 6 cut(s) 100, 2701, 4153, 4858, 4981, 5500
MfeI CAATTG 1 cut(s) 4845
MflI RGATCY 9 cut(s) 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410
MhlI GDGCHC 7 cut(s) 20, 213, 1330, 1343, 1534, 4002, 4696
MlsI TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
MluNI TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
MmeI TCCRAC 7 cut(s) 519, 750, 1835, 2203, 3588, 3783, 4774
Mox20I TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
Mph1103I ATGCAT 3 cut(s) 600, 646, 5586
MroXI GAANNNNTTC 2 cut(s) 4412, 6007
MscI TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
MslI CAYNNNNRTG 8 cut(s) 764, 838, 945, 1333, 1637, 4399, 5589, 6372
Msp20I TGGCCA 5 cut(s) 5, 3594, 4472, 5517, 6450
MspA1I CMGCKG 2 cut(s) 823, 2141
MspCI CTTAAG 2 cut(s) 4990, 5012
MspI CCGG 3 cut(s) 632, 2339, 4449
MspR9I CCNGG 9 cut(s) 633, 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
MunI CAATTG 1 cut(s) 4845
Mva1269I GAATGC 2 cut(s) 1632, 5075
MvaI CCWGG 8 cut(s) 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
MvnI CGCG 1 cut(s) 1717
NciI CCSGG 1 cut(s) 633
NcoI CCATGG 3 cut(s) 2766, 2961, 4741
NdeI CATATG 5 cut(s) 839, 1332, 4029, 4688, 5564
NmeAIII GCCGAG 1 cut(s) 6824
NmuCI GTSAC 5 cut(s) 101, 421, 1213, 2588, 2753
NsiI ATGCAT 3 cut(s) 600, 646, 5586
NspI RCATGY 7 cut(s) 769, 2165, 4169, 5034, 5494, 6281, 6500
NspV TTCGAA 2 cut(s) 1912, 4544
OliI CACNNNNGTG 1 cut(s) 1333
PaeI GCATGC 2 cut(s) 4169, 6281
PaeR7I CTCGAG 1 cut(s) 2504
PagI TCATGA 3 cut(s) 2605, 3931, 5644
PaqCI CACCTGC 1 cut(s) 6920
PceI AGGCCT 1 cut(s) 2877
PciI ACATGT 2 cut(s) 5030, 6496
PciSI GCTCTTC 1 cut(s) 1770
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 1632, 5075
PdmI GAANNNNTTC 2 cut(s) 4412, 6007
PflMI CCANNNNNTGG 1 cut(s) 1644
PfoI TCCNGGA 1 cut(s) 2558
PinAI ACCGGT 1 cut(s) 4448
Ple19I CGATCG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 2702
PpuMI RGGWCCY 4 cut(s) 549, 4436, 4681, 6338
PscI ACATGT 2 cut(s) 5030, 6496
PshAI GACNNNNGTC 2 cut(s) 2492, 5565
PshBI ATTAAT 3 cut(s) 1445, 2466, 5157
PsiI TTATAA 2 cut(s) 2550, 6167
Psp1406I AACGTT 2 cut(s) 4858, 5500
Psp5II RGGWCCY 4 cut(s) 549, 4436, 4681, 6338
Psp6I CCWGG 8 cut(s) 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 8 cut(s) 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
PspOMI GGGCCC 2 cut(s) 209, 1339
PspPPI RGGWCCY 4 cut(s) 549, 4436, 4681, 6338
PstI CTGCAG 3 cut(s) 1140, 5761, 6931
PstNI CAGNNNCTG 4 cut(s) 1779, 2212, 2270, 2417
PsuI RGATCY 9 cut(s) 1405, 2026, 2932, 3472, 4303, 5122, 5885, 6258, 6410
PvuI CGATCG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 8 cut(s) 534, 1281, 3355, 4114, 4447, 4638, 5792, 6517
RsaNI GTAC 8 cut(s) 533, 1280, 3354, 4113, 4446, 4637, 5791, 6516
RseI CAYNNNNRTG 8 cut(s) 764, 838, 945, 1333, 1637, 4399, 5589, 6372
SalI GTCGAC 2 cut(s) 1661, 4952
SapI GCTCTTC 1 cut(s) 1770
ScrFI CCNGG 9 cut(s) 633, 1044, 1780, 2560, 4328, 4443, 4574, 5357, 6000
SduI GDGCHC 7 cut(s) 20, 213, 1330, 1343, 1534, 4002, 4696
SfcI CTRYAG 7 cut(s) 1136, 1797, 3198, 3948, 4656, 5757, 6927
Sfr274I CTCGAG 1 cut(s) 2504
SfuI TTCGAA 2 cut(s) 1912, 4544
SinI GGWCC 9 cut(s) 37, 380, 549, 826, 2176, 4436, 4681, 5663, 6338
SlaI CTCGAG 1 cut(s) 2504
SmiMI CAYNNNNRTG 8 cut(s) 764, 838, 945, 1333, 1637, 4399, 5589, 6372
SmlI CTYRAG 9 cut(s) 985, 2155, 2504, 2885, 4990, 5012, 5349, 5771, 6786
SmoI CTYRAG 9 cut(s) 985, 2155, 2504, 2885, 4990, 5012, 5349, 5771, 6786
SphI GCATGC 2 cut(s) 4169, 6281
SseBI AGGCCT 1 cut(s) 2877
SsiI CCGC 7 cut(s) 301, 829, 2139, 2497, 2951, 5191, 5695
StuI AGGCCT 1 cut(s) 2877
StyD4I CCNGG 9 cut(s) 631, 1042, 1778, 2558, 4326, 4441, 4572, 5355, 5998
TaiI ACGT 6 cut(s) 103, 2704, 4156, 4861, 4984, 5503
TaqII GACCGA 1 cut(s) 54
TatI WGTACW 4 cut(s) 532, 1279, 4636, 6515
TauI GCSGC 1 cut(s) 304
TseFI GTSAC 5 cut(s) 101, 421, 1213, 2588, 2753
Tsp45I GTSAC 5 cut(s) 101, 421, 1213, 2588, 2753
TspGWI ACGGA 2 cut(s) 371, 2352
Van91I CCANNNNNTGG 1 cut(s) 1644
Vha464I CTTAAG 2 cut(s) 4990, 5012
VneI GTGCAC 2 cut(s) 16, 1326
VpaK11BI GGWCC 9 cut(s) 37, 380, 549, 826, 2176, 4436, 4681, 5663, 6338
VspI ATTAAT 3 cut(s) 1445, 2466, 5157
XagI CCTNNNNNAGG 1 cut(s) 1208
XbaI TCTAGA 3 cut(s) 1616, 3838, 4939
XceI RCATGY 7 cut(s) 769, 2165, 4169, 5034, 5494, 6281, 6500
XcmI CCANNNNNNNNNTGG 6 cut(s) 820, 1776, 1818, 4748, 5413, 6218
XhoI CTCGAG 1 cut(s) 2504
XmiI GTMKAC 6 cut(s) 723, 1031, 1662, 2373, 3776, 4953
XmnI GAANNNNTTC 2 cut(s) 4412, 6007
Zsp2I ATGCAT 3 cut(s) 600, 646, 5586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.