Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056652.1

Orthogroup ID

OG0005342

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 384

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056652.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

atggatgaattgatggaacaagtgtcgctcctctctgtctctttgtcgaaggaagcttcctctagtattggaaagaccaacatccagtcaaagggtttattccctgaaggcctctctcttgagaagaagtattccgttccagatgtgaaaaacttgtccattgaggatccagatgttcaagtcccgcactcttccatggaggataacagaaagcatagtaataatatgattgtcctttctgatgatgaaactgaagtagttttaccgagtgaggcagttttatctgatactaagatgagtctgtgtatgatggatgacaagacagtggcttctactgttgataaaagcacttcatataatgattctgtaaagaagaagctttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 SEN1_N

Protein Analysis

128

Amino Acids

14.04

Weight (kDa)

4.68

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16800 AT1G16800 AT1G16800
fragaria_vesca	FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870
malus_domestica	MD17G1161500.v1.1
prunus_persica	Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1
pyrus_communis	pycom17g15460
rosa_chinensis	RchiOBHm_Chr2g0149261
rosa_laevigata	RLG00000020388
rosa_multiflora	Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015
rosa_roxburghii	Rroxscaffold_2G00098260
rosa_rugosa	Rorug02G0410000
rosa_samantha	Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100
rosa_wichuraiana	Rw2G038300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	161, 174
AcuI	CTGAAG	2 cut(s)	126, 273
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	2 cut(s)	56, 379
AluI	AGCT	2 cut(s)	56, 379
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BccI	CCATC	2 cut(s)	7, 304
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	3 cut(s)	10, 81, 319
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	161, 174
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	325, 337
Bst6I	CTCTTC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	10, 81, 319
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	10, 81, 319
BtsIMutI	CAGTG	1 cut(s)	330
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	4 cut(s)	56, 111, 329, 379
CviKI_1	RGCY	4 cut(s)	56, 111, 329, 379
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	126, 273
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	199
FaiI	YATR	6 cut(s)	197, 216, 227, 308, 355, 357
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	192
FokI	GGATG	3 cut(s)	17, 68, 326
FspBI	CTAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	199
HindIII	AAGCTT	2 cut(s)	54, 377
HinfI	GANTC	2 cut(s)	298, 362
Hpy188I	TCNGA	2 cut(s)	241, 286
Hpy188III	TCNNGA	3 cut(s)	119, 140, 170
HpyAV	CCTTC	2 cut(s)	43, 101
HpyCH4III	ACNGT	2 cut(s)	325, 337
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	98, 117, 153, 183
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	136, 183
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	6 cut(s)	41, 70, 122, 157, 193, 265
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	307
SetI	ASST	2 cut(s)	58, 381
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	325, 337
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	1 cut(s)	330
TspDTI	ATGAA	3 cut(s)	21, 261, 342
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	330
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.