AAA domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16800 AT1G16800 AT1G16800 |
| fragaria_vesca | FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 |
| malus_domestica | MD17G1161500.v1.1 |
| prunus_persica | Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 |
| pyrus_communis | pycom17g15460 |
| rosa_chinensis | RchiOBHm_Chr2g0149261 |
| rosa_laevigata | RLG00000020388 |
| rosa_multiflora | Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00098260 |
| rosa_rugosa | Rorug02G0410000 |
| rosa_samantha | Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100 |
| rosa_wichuraiana | Rw2G038300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5148, 6254 |
| AarI | CACCTGC | 1 cut(s) | 2442 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3401 |
| Acc16I | TGCGCA | 2 cut(s) | 1055, 6438 |
| Acc36I | ACCTGC | 4 cut(s) | 1405, 2442, 3154, 5401 |
| Acc65I | GGTACC | 2 cut(s) | 4469, 5889 |
| AccB1I | GGYRCC | 5 cut(s) | 2744, 4469, 5547, 5889, 6082 |
| AccI | GTMKAC | 1 cut(s) | 2667 |
| AccII | CGCG | 2 cut(s) | 3755, 6912 |
| AciI | CCGC | 6 cut(s) | 301, 1304, 2270, 3656, 4426, 5221 |
| AclI | AACGTT | 1 cut(s) | 5530 |
| AclWI | GGATC | 8 cut(s) | 2021, 2134, 2518, 2793, 5160, 5450, 5992, 6630 |
| AcoI | YGGCCR | 5 cut(s) | 15, 2371, 4494, 5791, 6577 |
| AcuI | CTGAAG | 9 cut(s) | 798, 1216, 1382, 1572, 3054, 4376, 5070, 5396, 5772 |
| AcvI | CACGTG | 2 cut(s) | 2264, 4054 |
| AdeI | CACNNNGTG | 2 cut(s) | 3050, 6335 |
| AfeI | AGCGCT | 1 cut(s) | 908 |
| AflII | CTTAAG | 1 cut(s) | 749 |
| AflIII | ACRYGT | 4 cut(s) | 3277, 5718, 6279, 6334 |
| AgeI | ACCGGT | 1 cut(s) | 4472 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5754 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1465, 1497, 1691, 1723, 2310, 2342 |
| AleI | CACNNNNGTG | 1 cut(s) | 1333 |
| Alw21I | GWGCWC | 4 cut(s) | 1330, 1765, 4710, 4720 |
| Alw44I | GTGCAC | 1 cut(s) | 1326 |
| AlwI | GGATC | 8 cut(s) | 2021, 2134, 2518, 2793, 5160, 5450, 5992, 6630 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2285, 2432, 4541, 6818 |
| Ama87I | CYCGRG | 1 cut(s) | 1608 |
| Aor51HI | AGCGCT | 1 cut(s) | 908 |
| ApaI | GGGCCC | 1 cut(s) | 1343 |
| ApaLI | GTGCAC | 1 cut(s) | 1326 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1243, 1275, 4567, 4599 |
| AseI | ATTAAT | 1 cut(s) | 3375 |
| AsiGI | ACCGGT | 1 cut(s) | 4472 |
| Asp718I | GGTACC | 2 cut(s) | 4469, 5889 |
| AspLEI | GCGC | 7 cut(s) | 672, 909, 1056, 4956, 5961, 6439, 6912 |
| AsuC2I | CCSGG | 2 cut(s) | 633, 5795 |
| AsuII | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| AvaI | CYCGRG | 1 cut(s) | 1608 |
| BaeGI | GKGCMC | 4 cut(s) | 1330, 1343, 1717, 5550 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4857, 4890 |
| BalI | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| BanI | GGYRCC | 5 cut(s) | 2744, 4469, 5547, 5889, 6082 |
| BanII | GRGCYC | 2 cut(s) | 1343, 4026 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5596, 5628 |
| BauI | CACGAG | 1 cut(s) | 19 |
| BbrPI | CACGTG | 2 cut(s) | 2264, 4054 |
| BbsI | GAAGAC | 5 cut(s) | 78, 3459, 3864, 4538, 5037 |
| Bbv12I | GWGCWC | 4 cut(s) | 1330, 1765, 4710, 4720 |
| BbvCI | CCTCAGC | 1 cut(s) | 3531 |
| BceAI | ACGGC | 3 cut(s) | 4792, 6253, 6565 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 2044, 2078, 4178, 4212, 5506, 5540, 6175, 6209 |
| BciVI | GTATCC | 1 cut(s) | 2179 |
| BclI | TGATCA | 2 cut(s) | 5020, 6427 |
| BcnI | CCSGG | 2 cut(s) | 633, 5795 |
| BfmI | CTRYAG | 8 cut(s) | 1136, 1797, 2449, 3213, 3972, 4680, 5856, 6630 |
| BfoI | RGCGCY | 1 cut(s) | 910 |
| BfrI | CTTAAG | 1 cut(s) | 749 |
| BfuAI | ACCTGC | 4 cut(s) | 1405, 2442, 3154, 5401 |
| BfuI | GTATCC | 1 cut(s) | 2179 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3661 |
| BglII | AGATCT | 3 cut(s) | 1028, 4327, 6737 |
| BmcAI | AGTACT | 1 cut(s) | 5161 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5754 |
| BmeT110I | CYCGRG | 1 cut(s) | 1608 |
| BmrI | ACTGGG | 4 cut(s) | 1038, 1076, 3042, 5546 |
| BmuI | ACTGGG | 4 cut(s) | 1038, 1076, 3042, 5546 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2507 |
| BpiI | GAAGAC | 5 cut(s) | 78, 3459, 3864, 4538, 5037 |
| BpmI | CTGGAG | 5 cut(s) | 239, 864, 2904, 4449, 6082 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1792, 3531, 3570 |
| Bpu14I | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| BpuEI | CTTGAG | 6 cut(s) | 1006, 2176, 2540, 4714, 5364, 6864 |
| BpuMI | CCSGG | 2 cut(s) | 633, 5795 |
| BsaAI | YACGTR | 2 cut(s) | 2264, 4054 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3936, 5025 |
| BsaI | GGTCTC | 1 cut(s) | 5274 |
| BsaWI | WCCGGW | 1 cut(s) | 4472 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1024, 1054, 6590, 6620 |
| Bse118I | RCCGGY | 1 cut(s) | 4472 |
| Bse3DI | GCAATG | 2 cut(s) | 4608, 6618 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3936, 5025 |
| BseJI | GATNNNNATC | 2 cut(s) | 3936, 5025 |
| BseMI | GCAATG | 2 cut(s) | 4608, 6618 |
| BseRI | GAGGAG | 6 cut(s) | 82, 252, 295, 727, 1193, 3845 |
| BseSI | GKGCMC | 4 cut(s) | 1330, 1343, 1717, 5550 |
| BseYI | CCCAGC | 2 cut(s) | 324, 4559 |
| BsgI | GTGCAG | 6 cut(s) | 839, 1773, 2951, 3186, 3797, 5536 |
| Bsh1236I | CGCG | 2 cut(s) | 3755, 6912 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 4349 |
| BshNI | GGYRCC | 5 cut(s) | 2744, 4469, 5547, 5889, 6082 |
| BshTI | ACCGGT | 1 cut(s) | 4472 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 4349 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1330, 1765, 4710, 4720 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1608 |
| BsiSI | CCGG | 3 cut(s) | 632, 4473, 5794 |
| BslFI | GGGAC | 4 cut(s) | 366, 1814, 4569, 5812 |
| BsmBI | CGTCTC | 3 cut(s) | 113, 6121, 6516 |
| BsmFI | GGGAC | 4 cut(s) | 366, 1814, 4569, 5812 |
| BsmI | GAATGC | 6 cut(s) | 250, 1587, 1632, 3341, 3558, 5818 |
| Bso31I | GGTCTC | 1 cut(s) | 5274 |
| BsoBI | CYCGRG | 1 cut(s) | 1608 |
| Bsp119I | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| Bsp120I | GGGCCC | 1 cut(s) | 1339 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1330, 1343, 1717, 1765, 4026, 4710, 4720, 5550 |
| Bsp1407I | TGTACA | 1 cut(s) | 4660 |
| Bsp19I | CCATGG | 1 cut(s) | 2781 |
| Bsp68I | TCGCGA | 1 cut(s) | 3755 |
| BspACI | CCGC | 6 cut(s) | 301, 1304, 2270, 3656, 4426, 5221 |
| BspFNI | CGCG | 2 cut(s) | 3755, 6912 |
| BspHI | TCATGA | 3 cut(s) | 2620, 3955, 5743 |
| BspMAI | CTGCAG | 3 cut(s) | 1140, 2453, 5860 |
| BspMI | ACCTGC | 4 cut(s) | 1405, 2442, 3154, 5401 |
| BspPI | GGATC | 8 cut(s) | 2021, 2134, 2518, 2793, 5160, 5450, 5992, 6630 |
| BspQI | GCTCTTC | 2 cut(s) | 1091, 1770 |
| BspT104I | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| BspT107I | GGYRCC | 5 cut(s) | 2744, 4469, 5547, 5889, 6082 |
| BspTI | CTTAAG | 1 cut(s) | 749 |
| BspTNI | GGTCTC | 1 cut(s) | 5274 |
| BsrDI | GCAATG | 2 cut(s) | 4608, 6618 |
| BsrFI | RCCGGY | 1 cut(s) | 4472 |
| BsrGI | TGTACA | 1 cut(s) | 4660 |
| BssAI | RCCGGY | 1 cut(s) | 4472 |
| BssNAI | GTATAC | 1 cut(s) | 2668 |
| BssSI | CACGAG | 1 cut(s) | 19 |
| Bst1107I | GTATAC | 1 cut(s) | 2668 |
| Bst2BI | CACGAG | 1 cut(s) | 19 |
| BstAFI | CTTAAG | 1 cut(s) | 749 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 315, 745, 1760, 2935 |
| BstAUI | TGTACA | 1 cut(s) | 4660 |
| BstBAI | YACGTR | 2 cut(s) | 2264, 4054 |
| BstBI | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| BstC8I | GCNNGC | 5 cut(s) | 982, 4191, 4515, 5007, 6369 |
| BstDSI | CCRYGG | 2 cut(s) | 1476, 2781 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1208, 6459 |
| BstFNI | CGCG | 2 cut(s) | 3755, 6912 |
| BstH2I | RGCGCY | 1 cut(s) | 910 |
| BstHHI | GCGC | 7 cut(s) | 672, 909, 1056, 4956, 5961, 6439, 6912 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 4349 |
| BstNSI | RCATGY | 9 cut(s) | 835, 1498, 2165, 3281, 4193, 5524, 5722, 6283, 6371 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2507 |
| BstSFI | CTRYAG | 8 cut(s) | 1136, 1797, 2449, 3213, 3972, 4680, 5856, 6630 |
| BstSLI | GKGCMC | 4 cut(s) | 1330, 1343, 1717, 5550 |
| BstUI | CGCG | 2 cut(s) | 3755, 6912 |
| BstV2I | GAAGAC | 5 cut(s) | 78, 3459, 3864, 4538, 5037 |
| BstX2I | RGATCY | 8 cut(s) | 1028, 2026, 2126, 2523, 4327, 5152, 5984, 6737 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 947, 1644, 3439 |
| BstYI | RGATCY | 8 cut(s) | 1028, 2026, 2126, 2523, 4327, 5152, 5984, 6737 |
| BstZ17I | GTATAC | 1 cut(s) | 2668 |
| BsuI | GTATCC | 1 cut(s) | 2179 |
| BtgI | CCRYGG | 2 cut(s) | 1476, 2781 |
| BtsI | GCAGTG | 5 cut(s) | 311, 857, 4786, 4949, 6394 |
| BtuMI | TCGCGA | 1 cut(s) | 3755 |
| BveI | ACCTGC | 4 cut(s) | 1405, 2442, 3154, 5401 |
| Cac8I | GCNNGC | 5 cut(s) | 982, 4191, 4515, 5007, 6369 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2285, 2432, 4541, 6818 |
| CciI | TCATGA | 3 cut(s) | 2620, 3955, 5743 |
| CfoI | GCGC | 7 cut(s) | 672, 909, 1056, 4956, 5961, 6439, 6912 |
| Cfr10I | RCCGGY | 1 cut(s) | 4472 |
| CsiI | ACCWGGT | 1 cut(s) | 3613 |
| CspAI | ACCGGT | 1 cut(s) | 4472 |
| DraI | TTTAAA | 4 cut(s) | 148, 3838, 5215, 5421 |
| DraIII | CACNNNGTG | 2 cut(s) | 3050, 6335 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3401 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5754 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3401 |
| EaeI | YGGCCR | 5 cut(s) | 15, 2371, 4494, 5791, 6577 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5754 |
| EciI | GGCGGA | 1 cut(s) | 4441 |
| Eco147I | AGGCCT | 2 cut(s) | 3194, 6454 |
| Eco24I | GRGCYC | 2 cut(s) | 1343, 4026 |
| Eco31I | GGTCTC | 1 cut(s) | 5274 |
| Eco32I | GATATC | 1 cut(s) | 4258 |
| Eco47III | AGCGCT | 1 cut(s) | 908 |
| Eco57I | CTGAAG | 9 cut(s) | 798, 1216, 1382, 1572, 3054, 4376, 5070, 5396, 5772 |
| Eco72I | CACGTG | 2 cut(s) | 2264, 4054 |
| Eco88I | CYCGRG | 1 cut(s) | 1608 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1208, 6459 |
| EcoO109I | RGGNCCY | 9 cut(s) | 192, 209, 517, 1339, 1340, 1828, 4460, 4538, 4583 |
| EcoRI | GAATTC | 2 cut(s) | 962, 4229 |
| EcoRV | GATATC | 1 cut(s) | 4258 |
| EcoT22I | ATGCAT | 4 cut(s) | 145, 320, 600, 4797 |
| EcoT38I | GRGCYC | 2 cut(s) | 1343, 4026 |
| Esp3I | CGTCTC | 3 cut(s) | 113, 6121, 6516 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1483, 1515, 3118, 3150, 4358, 4390, 5878, 5910 |
| FaqI | GGGAC | 4 cut(s) | 366, 1814, 4569, 5812 |
| FauI | CCCGC | 1 cut(s) | 1311 |
| FauNDI | CATATG | 2 cut(s) | 839, 1332 |
| FbaI | TGATCA | 2 cut(s) | 5020, 6427 |
| FblI | GTMKAC | 1 cut(s) | 2667 |
| FriOI | GRGCYC | 2 cut(s) | 1343, 4026 |
| FspI | TGCGCA | 2 cut(s) | 1055, 6438 |
| GlaI | GCGC | 7 cut(s) | 671, 908, 1055, 4955, 5960, 6438, 6911 |
| GsaI | CCCAGC | 2 cut(s) | 328, 4563 |
| GsuI | CTGGAG | 5 cut(s) | 239, 864, 2904, 4449, 6082 |
| HaeII | RGCGCY | 1 cut(s) | 910 |
| HapII | CCGG | 3 cut(s) | 632, 4473, 5794 |
| HhaI | GCGC | 7 cut(s) | 672, 909, 1056, 4956, 5961, 6439, 6912 |
| Hin6I | GCGC | 7 cut(s) | 670, 907, 1054, 4954, 5959, 6437, 6910 |
| HinP1I | GCGC | 7 cut(s) | 670, 907, 1054, 4954, 5959, 6437, 6910 |
| HincII | GTYRAC | 4 cut(s) | 1663, 1929, 2389, 4388 |
| HindII | GTYRAC | 4 cut(s) | 1663, 1929, 2389, 4388 |
| HindIII | AAGCTT | 3 cut(s) | 1149, 2005, 2874 |
| HpaI | GTTAAC | 1 cut(s) | 1929 |
| HpaII | CCGG | 3 cut(s) | 632, 4473, 5794 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyCH4IV | ACGT | 9 cut(s) | 100, 1180, 2263, 4053, 4144, 4177, 5530, 6334, 6432 |
| HpySE526I | ACGT | 9 cut(s) | 100, 1180, 2263, 4053, 4144, 4177, 5530, 6334, 6432 |
| HspAI | GCGC | 7 cut(s) | 670, 907, 1054, 4954, 5959, 6437, 6910 |
| KpnI | GGTACC | 2 cut(s) | 4473, 5893 |
| Ksp22I | TGATCA | 2 cut(s) | 5020, 6427 |
| KspAI | GTTAAC | 1 cut(s) | 1929 |
| LguI | GCTCTTC | 2 cut(s) | 1091, 1770 |
| LmnI | GCTCC | 4 cut(s) | 1987, 2923, 5797, 6820 |
| MabI | ACCWGGT | 1 cut(s) | 3613 |
| MaeII | ACGT | 9 cut(s) | 100, 1180, 2263, 4053, 4144, 4177, 5530, 6334, 6432 |
| MfeI | CAATTG | 3 cut(s) | 2789, 3105, 4944 |
| MflI | RGATCY | 8 cut(s) | 1028, 2026, 2126, 2523, 4327, 5152, 5984, 6737 |
| MhlI | GDGCHC | 8 cut(s) | 1330, 1343, 1717, 1765, 4026, 4710, 4720, 5550 |
| MlsI | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| MluNI | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| MlyI | GAGTC | 8 cut(s) | 83, 557, 947, 1874, 2384, 3088, 3515, 4393 |
| MmeI | TCCRAC | 4 cut(s) | 23, 2203, 3456, 4798 |
| Mox20I | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| Mph1103I | ATGCAT | 4 cut(s) | 145, 320, 600, 4797 |
| MscI | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| MslI | CAYNNNNRTG | 8 cut(s) | 945, 1321, 1333, 1637, 4033, 5688, 5938, 6366 |
| Msp20I | TGGCCA | 4 cut(s) | 17, 2373, 4496, 6579 |
| MspA1I | CMGCKG | 2 cut(s) | 823, 6260 |
| MspCI | CTTAAG | 1 cut(s) | 749 |
| MspI | CCGG | 3 cut(s) | 632, 4473, 5794 |
| MunI | CAATTG | 3 cut(s) | 2789, 3105, 4944 |
| Mva1269I | GAATGC | 6 cut(s) | 250, 1587, 1632, 3341, 3558, 5818 |
| MvnI | CGCG | 2 cut(s) | 3755, 6912 |
| NciI | CCSGG | 2 cut(s) | 633, 5795 |
| NcoI | CCATGG | 1 cut(s) | 2781 |
| NdeI | CATATG | 2 cut(s) | 839, 1332 |
| NmuCI | GTSAC | 6 cut(s) | 421, 950, 3095, 3537, 6785, 6842 |
| NruI | TCGCGA | 1 cut(s) | 3755 |
| NsbI | TGCGCA | 2 cut(s) | 1055, 6438 |
| NsiI | ATGCAT | 4 cut(s) | 145, 320, 600, 4797 |
| NspI | RCATGY | 9 cut(s) | 835, 1498, 2165, 3281, 4193, 5524, 5722, 6283, 6371 |
| NspV | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| OliI | CACNNNNGTG | 1 cut(s) | 1333 |
| PaeI | GCATGC | 2 cut(s) | 4193, 6371 |
| PagI | TCATGA | 3 cut(s) | 2620, 3955, 5743 |
| PaqCI | CACCTGC | 1 cut(s) | 2442 |
| PceI | AGGCCT | 2 cut(s) | 3194, 6454 |
| PciI | ACATGT | 3 cut(s) | 3277, 5718, 6279 |
| PciSI | GCTCTTC | 2 cut(s) | 1091, 1770 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 6 cut(s) | 250, 1587, 1632, 3341, 3558, 5818 |
| PflFI | GACNNNGTC | 1 cut(s) | 3615 |
| PfoI | TCCNGGA | 1 cut(s) | 3363 |
| PinAI | ACCGGT | 1 cut(s) | 4472 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PleI | GAGTC | 8 cut(s) | 83, 556, 947, 1873, 2384, 3087, 3514, 4392 |
| PmaCI | CACGTG | 2 cut(s) | 2264, 4054 |
| PmlI | CACGTG | 2 cut(s) | 2264, 4054 |
| PpsI | GAGTC | 8 cut(s) | 83, 556, 947, 1873, 2384, 3087, 3514, 4392 |
| Ppu21I | YACGTR | 2 cut(s) | 2264, 4054 |
| PpuMI | RGGWCCY | 6 cut(s) | 192, 517, 1828, 4460, 4538, 4583 |
| PscI | ACATGT | 3 cut(s) | 3277, 5718, 6279 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2507 |
| PshBI | ATTAAT | 1 cut(s) | 3375 |
| PsiI | TTATAA | 2 cut(s) | 5148, 6254 |
| Psp1406I | AACGTT | 1 cut(s) | 5530 |
| Psp5II | RGGWCCY | 6 cut(s) | 192, 517, 1828, 4460, 4538, 4583 |
| PspCI | CACGTG | 2 cut(s) | 2264, 4054 |
| PspFI | CCCAGC | 2 cut(s) | 324, 4559 |
| PspOMI | GGGCCC | 1 cut(s) | 1339 |
| PspPPI | RGGWCCY | 6 cut(s) | 192, 517, 1828, 4460, 4538, 4583 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 6519, 6551 |
| PstI | CTGCAG | 3 cut(s) | 1140, 2453, 5860 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2285, 2432, 4541, 6818 |
| PsuI | RGATCY | 8 cut(s) | 1028, 2026, 2126, 2523, 4327, 5152, 5984, 6737 |
| PsyI | GACNNNGTC | 1 cut(s) | 3615 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| PvuII | CAGCTG | 2 cut(s) | 823, 6260 |
| RruI | TCGCGA | 1 cut(s) | 3755 |
| RseI | CAYNNNNRTG | 8 cut(s) | 945, 1321, 1333, 1637, 4033, 5688, 5938, 6366 |
| SapI | GCTCTTC | 2 cut(s) | 1091, 1770 |
| ScaI | AGTACT | 1 cut(s) | 5161 |
| SchI | GAGTC | 8 cut(s) | 83, 557, 947, 1874, 2384, 3088, 3515, 4393 |
| SduI | GDGCHC | 8 cut(s) | 1330, 1343, 1717, 1765, 4026, 4710, 4720, 5550 |
| SexAI | ACCWGGT | 1 cut(s) | 3613 |
| SfcI | CTRYAG | 8 cut(s) | 1136, 1797, 2449, 3213, 3972, 4680, 5856, 6630 |
| SfuI | TTCGAA | 3 cut(s) | 4568, 5526, 6692 |
| SmiI | ATTTAAAT | 1 cut(s) | 148 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 945, 1321, 1333, 1637, 4033, 5688, 5938, 6366 |
| SmlI | CTYRAG | 7 cut(s) | 749, 985, 2155, 2519, 4693, 5379, 6879 |
| SmoI | CTYRAG | 7 cut(s) | 749, 985, 2155, 2519, 4693, 5379, 6879 |
| SphI | GCATGC | 2 cut(s) | 4193, 6371 |
| SseBI | AGGCCT | 2 cut(s) | 3194, 6454 |
| SsiI | CCGC | 6 cut(s) | 301, 1304, 2270, 3656, 4426, 5221 |
| SspI | AATATT | 1 cut(s) | 3157 |
| StuI | AGGCCT | 2 cut(s) | 3194, 6454 |
| SwaI | ATTTAAAT | 1 cut(s) | 148 |
| TaiI | ACGT | 9 cut(s) | 103, 1183, 2266, 4056, 4147, 4180, 5533, 6337, 6435 |
| TaqII | GACCGA | 2 cut(s) | 2873, 3511 |
| TatI | WGTACW | 5 cut(s) | 532, 931, 3888, 4660, 5159 |
| TauI | GCSGC | 2 cut(s) | 304, 3658 |
| TseFI | GTSAC | 6 cut(s) | 421, 950, 3095, 3537, 6785, 6842 |
| Tsp45I | GTSAC | 6 cut(s) | 421, 950, 3095, 3537, 6785, 6842 |
| TspGWI | ACGGA | 7 cut(s) | 371, 2367, 2434, 3072, 5304, 6145, 6861 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3615 |
| Vha464I | CTTAAG | 1 cut(s) | 749 |
| VneI | GTGCAC | 1 cut(s) | 1326 |
| VspI | ATTAAT | 1 cut(s) | 3375 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1208, 6459 |
| XbaI | TCTAGA | 2 cut(s) | 3862, 4963 |
| XceI | RCATGY | 9 cut(s) | 835, 1498, 2165, 3281, 4193, 5524, 5722, 6283, 6371 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1776, 5443 |
| XmiI | GTMKAC | 1 cut(s) | 2667 |
| ZrmI | AGTACT | 1 cut(s) | 5161 |
| Zsp2I | ATGCAT | 4 cut(s) | 145, 320, 600, 4797 |