AAA domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16800 AT1G16800 AT1G16800 |
| fragaria_vesca | FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 |
| malus_domestica | MD17G1161500.v1.1 |
| prunus_persica | Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 |
| pyrus_communis | pycom17g15460 |
| rosa_chinensis | RchiOBHm_Chr2g0149261 |
| rosa_laevigata | RLG00000020388 |
| rosa_multiflora | Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00098260 |
| rosa_rugosa | Rorug02G0410000 |
| rosa_samantha | Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100 |
| rosa_wichuraiana | Rw2G038300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2550, 6164 |
| AarI | CACCTGC | 1 cut(s) | 6917 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 3377, 4909 |
| Acc36I | ACCTGC | 3 cut(s) | 1405, 5368, 6917 |
| Acc65I | GGTACC | 3 cut(s) | 4112, 4445, 5787 |
| AccB1I | GGYRCC | 3 cut(s) | 4112, 4445, 5787 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1644 |
| AccI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4950 |
| AccII | CGCG | 1 cut(s) | 1717 |
| AciI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5188, 5692 |
| AclI | AACGTT | 2 cut(s) | 4855, 5497 |
| AcoI | YGGCCR | 5 cut(s) | 3, 3592, 4470, 5512, 6445 |
| AcuI | CTGAAG | 9 cut(s) | 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5363 |
| AcyI | GRCGYC | 1 cut(s) | 3505 |
| AdeI | CACNNNGTG | 1 cut(s) | 4928 |
| AfaI | GTAC | 9 cut(s) | 534, 1281, 3355, 4114, 4447, 4638, 5789, 6188, 6514 |
| AflII | CTTAAG | 2 cut(s) | 4987, 5009 |
| AflIII | ACRYGT | 3 cut(s) | 2699, 5027, 6493 |
| AgeI | ACCGGT | 1 cut(s) | 4448 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 5011, 5617, 5652 |
| AjnI | CCWGG | 8 cut(s) | 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| AleI | CACNNNNGTG | 1 cut(s) | 1333 |
| Alw21I | GWGCWC | 3 cut(s) | 20, 1330, 4696 |
| Alw44I | GTGCAC | 2 cut(s) | 16, 1326 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1779, 2212, 2270, 2417 |
| Ama87I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| ApaI | GGGCCC | 1 cut(s) | 1343 |
| ApaLI | GTGCAC | 2 cut(s) | 16, 1326 |
| AseI | ATTAAT | 3 cut(s) | 1445, 2466, 5154 |
| AsiGI | ACCGGT | 1 cut(s) | 4448 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4412, 6004 |
| Asp718I | GGTACC | 3 cut(s) | 4112, 4445, 5787 |
| AspLEI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6330 |
| AsuC2I | CCSGG | 1 cut(s) | 633 |
| AsuII | TTCGAA | 2 cut(s) | 1912, 4544 |
| AvaI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| AvaII | GGWCC | 9 cut(s) | 37, 380, 549, 826, 2176, 4436, 4681, 5660, 6335 |
| BaeGI | GKGCMC | 3 cut(s) | 20, 1330, 1343 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2178, 2211 |
| BalI | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| BamHI | GGATCC | 1 cut(s) | 2932 |
| BanI | GGYRCC | 3 cut(s) | 4112, 4445, 5787 |
| BanII | GRGCYC | 2 cut(s) | 1343, 4002 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3012, 3044 |
| BauI | CACGAG | 1 cut(s) | 19 |
| BbsI | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4905, 6364 |
| Bbv12I | GWGCWC | 3 cut(s) | 20, 1330, 4696 |
| BceAI | ACGGC | 2 cut(s) | 2150, 6438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4154, 4188 |
| BciT130I | CCWGG | 8 cut(s) | 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| BciVI | GTATCC | 3 cut(s) | 320, 1540, 4834 |
| BclI | TGATCA | 2 cut(s) | 3273, 4849 |
| BcnI | CCSGG | 1 cut(s) | 633 |
| BfmI | CTRYAG | 7 cut(s) | 1136, 1797, 3198, 3948, 4656, 5754, 6924 |
| BfoI | RGCGCY | 1 cut(s) | 3438 |
| BfrI | CTTAAG | 2 cut(s) | 4987, 5009 |
| BfuAI | ACCTGC | 3 cut(s) | 1405, 5368, 6917 |
| BfuI | GTATCC | 3 cut(s) | 320, 1540, 4834 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3637 |
| BglII | AGATCT | 3 cut(s) | 1405, 4303, 6407 |
| Bme1390I | CCNGG | 9 cut(s) | 633, 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| Bme18I | GGWCC | 9 cut(s) | 37, 380, 549, 826, 2176, 4436, 4681, 5660, 6335 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 5011, 5617, 5652 |
| BmeT110I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| BmrFI | CCNGG | 9 cut(s) | 633, 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| BmrI | ACTGGG | 3 cut(s) | 1076, 2396, 6130 |
| BmuI | ACTGGG | 3 cut(s) | 1076, 2396, 6130 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2492, 5562 |
| BpiI | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4905, 6364 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 6054, 6086 |
| BpmI | CTGGAG | 5 cut(s) | 239, 864, 4349, 4425, 6191 |
| Bpu14I | TTCGAA | 2 cut(s) | 1912, 4544 |
| BpuEI | CTTGAG | 6 cut(s) | 1006, 2176, 2906, 5331, 5753, 6768 |
| BpuMI | CCSGG | 1 cut(s) | 633 |
| Bsa29I | ATCGAT | 2 cut(s) | 2025, 2125 |
| BsaHI | GRCGYC | 1 cut(s) | 3505 |
| BsaI | GGTCTC | 2 cut(s) | 5241, 6880 |
| BsaWI | WCCGGW | 1 cut(s) | 4448 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1024, 1054 |
| Bse118I | RCCGGY | 2 cut(s) | 2338, 4448 |
| Bse3DI | GCAATG | 3 cut(s) | 311, 4484, 6486 |
| BseBI | CCWGG | 8 cut(s) | 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| BseCI | ATCGAT | 2 cut(s) | 2025, 2125 |
| BseMI | GCAATG | 3 cut(s) | 311, 4484, 6486 |
| BseRI | GAGGAG | 7 cut(s) | 252, 295, 727, 1193, 2786, 4488, 6639 |
| BseSI | GKGCMC | 3 cut(s) | 20, 1330, 1343 |
| BseYI | CCCAGC | 1 cut(s) | 324 |
| BsgI | GTGCAG | 5 cut(s) | 839, 1773, 5503, 5976, 6318 |
| Bsh1236I | CGCG | 1 cut(s) | 1717 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 4954 |
| BshNI | GGYRCC | 3 cut(s) | 4112, 4445, 5787 |
| BshTI | ACCGGT | 1 cut(s) | 4448 |
| BshVI | ATCGAT | 2 cut(s) | 2025, 2125 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 4954 |
| BsiHKAI | GWGCWC | 3 cut(s) | 20, 1330, 4696 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| BsiSI | CCGG | 3 cut(s) | 632, 2339, 4449 |
| BslFI | GGGAC | 5 cut(s) | 535, 2933, 3403, 4303, 5710 |
| BsmFI | GGGAC | 5 cut(s) | 535, 2933, 3403, 4303, 5710 |
| BsmI | GAATGC | 2 cut(s) | 1632, 5072 |
| Bso31I | GGTCTC | 2 cut(s) | 5241, 6880 |
| BsoBI | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| Bsp119I | TTCGAA | 2 cut(s) | 1912, 4544 |
| Bsp120I | GGGCCC | 1 cut(s) | 1339 |
| Bsp1286I | GDGCHC | 5 cut(s) | 20, 1330, 1343, 4002, 4696 |
| Bsp1407I | TGTACA | 2 cut(s) | 1279, 4636 |
| Bsp19I | CCATGG | 3 cut(s) | 2766, 2961, 4741 |
| BspACI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5188, 5692 |
| BspDI | ATCGAT | 2 cut(s) | 2025, 2125 |
| BspFNI | CGCG | 1 cut(s) | 1717 |
| BspHI | TCATGA | 3 cut(s) | 2605, 3931, 5641 |
| BspMAI | CTGCAG | 3 cut(s) | 1140, 5758, 6928 |
| BspMI | ACCTGC | 3 cut(s) | 1405, 5368, 6917 |
| BspQI | GCTCTTC | 1 cut(s) | 1770 |
| BspT104I | TTCGAA | 2 cut(s) | 1912, 4544 |
| BspT107I | GGYRCC | 3 cut(s) | 4112, 4445, 5787 |
| BspTI | CTTAAG | 2 cut(s) | 4987, 5009 |
| BspTNI | GGTCTC | 2 cut(s) | 5241, 6880 |
| BsrDI | GCAATG | 3 cut(s) | 311, 4484, 6486 |
| BsrFI | RCCGGY | 2 cut(s) | 2338, 4448 |
| BsrGI | TGTACA | 2 cut(s) | 1279, 4636 |
| BssAI | RCCGGY | 2 cut(s) | 2338, 4448 |
| BssNI | GRCGYC | 1 cut(s) | 3505 |
| BssSI | CACGAG | 1 cut(s) | 19 |
| Bst2BI | CACGAG | 1 cut(s) | 19 |
| Bst2UI | CCWGG | 8 cut(s) | 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| Bst6I | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5382 |
| BstACI | GRCGYC | 1 cut(s) | 3505 |
| BstAFI | CTTAAG | 2 cut(s) | 4987, 5009 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 745, 4490, 4928 |
| BstAUI | TGTACA | 2 cut(s) | 1279, 4636 |
| BstBI | TTCGAA | 2 cut(s) | 1912, 4544 |
| BstDSI | CCRYGG | 3 cut(s) | 2766, 2961, 4741 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| BstFNI | CGCG | 1 cut(s) | 1717 |
| BstH2I | RGCGCY | 1 cut(s) | 3438 |
| BstHHI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6330 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 4954 |
| BstNI | CCWGG | 8 cut(s) | 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| BstNSI | RCATGY | 8 cut(s) | 769, 2165, 2703, 4169, 5031, 5491, 6278, 6497 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2492, 5562 |
| BstSCI | CCNGG | 9 cut(s) | 631, 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| BstSFI | CTRYAG | 7 cut(s) | 1136, 1797, 3198, 3948, 4656, 5754, 6924 |
| BstSLI | GKGCMC | 3 cut(s) | 20, 1330, 1343 |
| BstUI | CGCG | 1 cut(s) | 1717 |
| BstV2I | GAAGAC | 7 cut(s) | 78, 101, 1530, 3840, 4338, 4905, 6364 |
| BstX2I | RGATCY | 8 cut(s) | 1405, 2932, 3472, 4303, 5119, 5882, 6255, 6407 |
| BstYI | RGATCY | 8 cut(s) | 1405, 2932, 3472, 4303, 5119, 5882, 6255, 6407 |
| Bsu15I | ATCGAT | 2 cut(s) | 2025, 2125 |
| BsuI | GTATCC | 3 cut(s) | 320, 1540, 4834 |
| BsuTUI | ATCGAT | 2 cut(s) | 2025, 2125 |
| BtgI | CCRYGG | 3 cut(s) | 2766, 2961, 4741 |
| BtsI | GCAGTG | 2 cut(s) | 1982, 4922 |
| BveI | ACCTGC | 3 cut(s) | 1405, 5368, 6917 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1779, 2212, 2270, 2417 |
| CciI | TCATGA | 3 cut(s) | 2605, 3931, 5641 |
| CfoI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6330 |
| Cfr10I | RCCGGY | 2 cut(s) | 2338, 4448 |
| ClaI | ATCGAT | 2 cut(s) | 2025, 2125 |
| CseI | GACGC | 2 cut(s) | 3513, 3687 |
| Csp6I | GTAC | 9 cut(s) | 533, 1280, 3354, 4113, 4446, 4637, 5788, 6187, 6513 |
| CspAI | ACCGGT | 1 cut(s) | 4448 |
| CviQI | GTAC | 9 cut(s) | 533, 1280, 3354, 4113, 4446, 4637, 5788, 6187, 6513 |
| DraI | TTTAAA | 4 cut(s) | 3343, 3814, 5388, 5779 |
| DraIII | CACNNNGTG | 1 cut(s) | 4928 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 3377, 4909 |
| DriI | GACNNNNNGTC | 3 cut(s) | 5011, 5617, 5652 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 3377, 4909 |
| EaeI | YGGCCR | 5 cut(s) | 3, 3592, 4470, 5512, 6445 |
| Eam1104I | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5382 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 5011, 5617, 5652 |
| EarI | CTCTTC | 9 cut(s) | 19, 219, 658, 1548, 1770, 1905, 2962, 3852, 5382 |
| Eco147I | AGGCCT | 1 cut(s) | 2877 |
| Eco24I | GRGCYC | 2 cut(s) | 1343, 4002 |
| Eco31I | GGTCTC | 2 cut(s) | 5241, 6880 |
| Eco32I | GATATC | 2 cut(s) | 1266, 4234 |
| Eco47I | GGWCC | 9 cut(s) | 37, 380, 549, 826, 2176, 4436, 4681, 5660, 6335 |
| Eco57I | CTGAAG | 9 cut(s) | 513, 1216, 1572, 2115, 2892, 3039, 4352, 4361, 5363 |
| Eco88I | CYCGRG | 3 cut(s) | 1007, 1608, 2504 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| EcoO109I | RGGNCCY | 7 cut(s) | 209, 549, 1339, 1340, 4436, 4681, 6335 |
| EcoRI | GAATTC | 1 cut(s) | 5710 |
| EcoRII | CCWGG | 8 cut(s) | 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| EcoRV | GATATC | 2 cut(s) | 1266, 4234 |
| EcoT22I | ATGCAT | 3 cut(s) | 600, 646, 5583 |
| EcoT38I | GRGCYC | 2 cut(s) | 1343, 4002 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2048, 2080, 2281, 2313 |
| FaqI | GGGAC | 5 cut(s) | 535, 2933, 3403, 4303, 5710 |
| FauI | CCCGC | 2 cut(s) | 2958, 5685 |
| FauNDI | CATATG | 5 cut(s) | 839, 1332, 4029, 4688, 5561 |
| FbaI | TGATCA | 2 cut(s) | 3273, 4849 |
| FblI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4950 |
| FriOI | GRGCYC | 2 cut(s) | 1343, 4002 |
| GlaI | GCGC | 6 cut(s) | 671, 1181, 1716, 2019, 3436, 6329 |
| GsaI | CCCAGC | 1 cut(s) | 328 |
| GsuI | CTGGAG | 5 cut(s) | 239, 864, 4349, 4425, 6191 |
| HaeII | RGCGCY | 1 cut(s) | 3438 |
| HapII | CCGG | 3 cut(s) | 632, 2339, 4449 |
| HgaI | GACGC | 2 cut(s) | 3513, 3687 |
| HhaI | GCGC | 6 cut(s) | 672, 1182, 1717, 2020, 3437, 6330 |
| Hin1I | GRCGYC | 1 cut(s) | 3505 |
| Hin6I | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6328 |
| HinP1I | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6328 |
| HincII | GTYRAC | 6 cut(s) | 1663, 1929, 3157, 4364, 4951, 5394 |
| HindII | GTYRAC | 6 cut(s) | 1663, 1929, 3157, 4364, 4951, 5394 |
| HindIII | AAGCTT | 6 cut(s) | 1149, 2005, 2457, 2820, 3143, 3402 |
| HpaI | GTTAAC | 1 cut(s) | 1929 |
| HpaII | CCGG | 3 cut(s) | 632, 2339, 4449 |
| Hpy99I | CGWCG | 4 cut(s) | 80, 1850, 2725, 5615 |
| HpyCH4IV | ACGT | 5 cut(s) | 100, 4153, 4855, 4978, 5497 |
| HpySE526I | ACGT | 5 cut(s) | 100, 4153, 4855, 4978, 5497 |
| Hsp92I | GRCGYC | 1 cut(s) | 3505 |
| HspAI | GCGC | 6 cut(s) | 670, 1180, 1715, 2018, 3435, 6328 |
| KflI | GGGWCCC | 1 cut(s) | 549 |
| KpnI | GGTACC | 3 cut(s) | 4116, 4449, 5791 |
| Ksp22I | TGATCA | 2 cut(s) | 3273, 4849 |
| KspAI | GTTAAC | 1 cut(s) | 1929 |
| LguI | GCTCTTC | 1 cut(s) | 1770 |
| LmnI | GCTCC | 7 cut(s) | 1045, 2799, 3547, 4330, 4830, 5695, 6724 |
| MaeII | ACGT | 5 cut(s) | 100, 4153, 4855, 4978, 5497 |
| MfeI | CAATTG | 2 cut(s) | 4845, 4917 |
| MflI | RGATCY | 8 cut(s) | 1405, 2932, 3472, 4303, 5119, 5882, 6255, 6407 |
| MhlI | GDGCHC | 5 cut(s) | 20, 1330, 1343, 4002, 4696 |
| MlsI | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| MluNI | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| MmeI | TCCRAC | 8 cut(s) | 519, 750, 1835, 2203, 3588, 3760, 3783, 4774 |
| Mox20I | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| Mph1103I | ATGCAT | 3 cut(s) | 600, 646, 5583 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4412, 6004 |
| MscI | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| MslI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1333, 1637, 4399, 5586, 6369 |
| Msp20I | TGGCCA | 5 cut(s) | 5, 3594, 4472, 5514, 6447 |
| MspA1I | CMGCKG | 2 cut(s) | 823, 2141 |
| MspCI | CTTAAG | 2 cut(s) | 4987, 5009 |
| MspI | CCGG | 3 cut(s) | 632, 2339, 4449 |
| MspR9I | CCNGG | 9 cut(s) | 633, 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| MunI | CAATTG | 2 cut(s) | 4845, 4917 |
| Mva1269I | GAATGC | 2 cut(s) | 1632, 5072 |
| MvaI | CCWGG | 8 cut(s) | 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| MvnI | CGCG | 1 cut(s) | 1717 |
| NciI | CCSGG | 1 cut(s) | 633 |
| NcoI | CCATGG | 3 cut(s) | 2766, 2961, 4741 |
| NdeI | CATATG | 5 cut(s) | 839, 1332, 4029, 4688, 5561 |
| NmeAIII | GCCGAG | 1 cut(s) | 6821 |
| NmuCI | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| NsiI | ATGCAT | 3 cut(s) | 600, 646, 5583 |
| NspI | RCATGY | 8 cut(s) | 769, 2165, 2703, 4169, 5031, 5491, 6278, 6497 |
| NspV | TTCGAA | 2 cut(s) | 1912, 4544 |
| OliI | CACNNNNGTG | 1 cut(s) | 1333 |
| PaeI | GCATGC | 2 cut(s) | 4169, 6278 |
| PaeR7I | CTCGAG | 1 cut(s) | 2504 |
| PagI | TCATGA | 3 cut(s) | 2605, 3931, 5641 |
| PaqCI | CACCTGC | 1 cut(s) | 6917 |
| PceI | AGGCCT | 1 cut(s) | 2877 |
| PciI | ACATGT | 3 cut(s) | 2699, 5027, 6493 |
| PciSI | GCTCTTC | 1 cut(s) | 1770 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 2 cut(s) | 1632, 5072 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4412, 6004 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1644 |
| PfoI | TCCNGGA | 1 cut(s) | 2558 |
| PinAI | ACCGGT | 1 cut(s) | 4448 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 4 cut(s) | 549, 4436, 4681, 6335 |
| PscI | ACATGT | 3 cut(s) | 2699, 5027, 6493 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2492, 5562 |
| PshBI | ATTAAT | 3 cut(s) | 1445, 2466, 5154 |
| PsiI | TTATAA | 2 cut(s) | 2550, 6164 |
| Psp1406I | AACGTT | 2 cut(s) | 4855, 5497 |
| Psp5II | RGGWCCY | 4 cut(s) | 549, 4436, 4681, 6335 |
| Psp6I | CCWGG | 8 cut(s) | 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| PspFI | CCCAGC | 1 cut(s) | 324 |
| PspGI | CCWGG | 8 cut(s) | 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| PspOMI | GGGCCC | 1 cut(s) | 1339 |
| PspPPI | RGGWCCY | 4 cut(s) | 549, 4436, 4681, 6335 |
| PstI | CTGCAG | 3 cut(s) | 1140, 5758, 6928 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1779, 2212, 2270, 2417 |
| PsuI | RGATCY | 8 cut(s) | 1405, 2932, 3472, 4303, 5119, 5882, 6255, 6407 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| PvuII | CAGCTG | 1 cut(s) | 823 |
| RsaI | GTAC | 9 cut(s) | 534, 1281, 3355, 4114, 4447, 4638, 5789, 6188, 6514 |
| RsaNI | GTAC | 9 cut(s) | 533, 1280, 3354, 4113, 4446, 4637, 5788, 6187, 6513 |
| RseI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1333, 1637, 4399, 5586, 6369 |
| SalI | GTCGAC | 2 cut(s) | 1661, 4949 |
| SapI | GCTCTTC | 1 cut(s) | 1770 |
| ScrFI | CCNGG | 9 cut(s) | 633, 1044, 1780, 2560, 4328, 4443, 4574, 5354, 5997 |
| SduI | GDGCHC | 5 cut(s) | 20, 1330, 1343, 4002, 4696 |
| SfcI | CTRYAG | 7 cut(s) | 1136, 1797, 3198, 3948, 4656, 5754, 6924 |
| Sfr274I | CTCGAG | 1 cut(s) | 2504 |
| SfuI | TTCGAA | 2 cut(s) | 1912, 4544 |
| SinI | GGWCC | 9 cut(s) | 37, 380, 549, 826, 2176, 4436, 4681, 5660, 6335 |
| SlaI | CTCGAG | 1 cut(s) | 2504 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1333, 1637, 4399, 5586, 6369 |
| SmlI | CTYRAG | 9 cut(s) | 985, 2155, 2504, 2885, 4987, 5009, 5346, 5768, 6783 |
| SmoI | CTYRAG | 9 cut(s) | 985, 2155, 2504, 2885, 4987, 5009, 5346, 5768, 6783 |
| SphI | GCATGC | 2 cut(s) | 4169, 6278 |
| SseBI | AGGCCT | 1 cut(s) | 2877 |
| SsiI | CCGC | 7 cut(s) | 301, 829, 2139, 2497, 2951, 5188, 5692 |
| StuI | AGGCCT | 1 cut(s) | 2877 |
| StyD4I | CCNGG | 9 cut(s) | 631, 1042, 1778, 2558, 4326, 4441, 4572, 5352, 5995 |
| TaiI | ACGT | 5 cut(s) | 103, 4156, 4858, 4981, 5500 |
| TaqII | GACCGA | 1 cut(s) | 54 |
| TatI | WGTACW | 5 cut(s) | 532, 1279, 4636, 6186, 6512 |
| TauI | GCSGC | 1 cut(s) | 304 |
| TseFI | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| Tsp45I | GTSAC | 5 cut(s) | 101, 421, 1213, 2588, 2753 |
| TspGWI | ACGGA | 3 cut(s) | 2352, 2890, 6425 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1644 |
| Vha464I | CTTAAG | 2 cut(s) | 4987, 5009 |
| VneI | GTGCAC | 2 cut(s) | 16, 1326 |
| VpaK11BI | GGWCC | 9 cut(s) | 37, 380, 549, 826, 2176, 4436, 4681, 5660, 6335 |
| VspI | ATTAAT | 3 cut(s) | 1445, 2466, 5154 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1208 |
| XbaI | TCTAGA | 3 cut(s) | 1616, 3838, 4936 |
| XceI | RCATGY | 8 cut(s) | 769, 2165, 2703, 4169, 5031, 5491, 6278, 6497 |
| XcmI | CCANNNNNNNNNTGG | 6 cut(s) | 820, 1776, 1818, 4748, 5410, 6215 |
| XhoI | CTCGAG | 1 cut(s) | 2504 |
| XmiI | GTMKAC | 5 cut(s) | 723, 1031, 1662, 2373, 4950 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4412, 6004 |
| Zsp2I | ATGCAT | 3 cut(s) | 600, 646, 5583 |