AAA domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16800 AT1G16800 AT1G16800 |
| fragaria_vesca | FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 FvH4_6g36870 |
| malus_domestica | MD17G1161500.v1.1 |
| prunus_persica | Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 Prupe.3G023800_v2.0.a1 |
| pyrus_communis | pycom17g15460 |
| rosa_chinensis | RchiOBHm_Chr2g0149261 |
| rosa_laevigata | RLG00000020388 |
| rosa_multiflora | Rmu_co8056652.1_g000001 Rmu_co8113988.1_g000001 Rmu_sc0001615.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00098260 |
| rosa_rugosa | Rorug02G0410000 |
| rosa_samantha | Rh2AG470900 Rh2BG483100 Rh2CG456800 Rh2DG492100 |
| rosa_wichuraiana | Rw2G038300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2526, 6083 |
| AarI | CACCTGC | 1 cut(s) | 6734 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3353 |
| Acc36I | ACCTGC | 3 cut(s) | 1399, 5287, 6734 |
| Acc65I | GGTACC | 1 cut(s) | 5706 |
| AccB1I | GGYRCC | 1 cut(s) | 5706 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1638, 1811, 4364 |
| AccI | GTMKAC | 5 cut(s) | 723, 1031, 1656, 2367, 4869 |
| AccII | CGCG | 1 cut(s) | 1711 |
| AciI | CCGC | 9 cut(s) | 301, 829, 1431, 2133, 2473, 2927, 4418, 5107, 5611 |
| AclI | AACGTT | 2 cut(s) | 4774, 5416 |
| AcoI | YGGCCR | 5 cut(s) | 3, 3568, 4386, 5431, 6364 |
| AcuI | CTGAAG | 9 cut(s) | 513, 1210, 1566, 2109, 2868, 3015, 4268, 4277, 5282 |
| AcyI | GRCGYC | 1 cut(s) | 3481 |
| AdeI | CACNNNGTG | 1 cut(s) | 4847 |
| AflII | CTTAAG | 2 cut(s) | 4906, 4928 |
| AflIII | ACRYGT | 3 cut(s) | 2675, 4946, 6412 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 4930, 5536, 5571 |
| AhlI | ACTAGT | 1 cut(s) | 1559 |
| AjnI | CCWGG | 6 cut(s) | 1042, 1772, 4357, 4488, 5271, 5914 |
| AleI | CACNNNNGTG | 1 cut(s) | 1327 |
| Alw21I | GWGCWC | 3 cut(s) | 20, 1324, 4612 |
| Alw44I | GTGCAC | 2 cut(s) | 16, 1320 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1773, 2206, 2264, 2411, 4364 |
| Ama87I | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| ApaI | GGGCCC | 1 cut(s) | 1336 |
| ApaLI | GTGCAC | 2 cut(s) | 16, 1320 |
| AseI | ATTAAT | 1 cut(s) | 5073 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4328, 5923 |
| Asp718I | GGTACC | 1 cut(s) | 5706 |
| AspLEI | GCGC | 5 cut(s) | 672, 1176, 1711, 2014, 6249 |
| AsuC2I | CCSGG | 2 cut(s) | 633, 2536 |
| AsuII | TTCGAA | 1 cut(s) | 1906 |
| AvaI | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| AvaII | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2170, 4352, 5579, 6254 |
| AxyI | CCTNAGG | 1 cut(s) | 2442 |
| BaeGI | GKGCMC | 3 cut(s) | 20, 1324, 1336 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2172, 2205, 4749, 4782 |
| BalI | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| BamHI | GGATCC | 1 cut(s) | 2908 |
| BanI | GGYRCC | 1 cut(s) | 5706 |
| BanII | GRGCYC | 1 cut(s) | 1336 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2988, 3020 |
| BauI | CACGAG | 1 cut(s) | 19 |
| BbsI | GAAGAC | 7 cut(s) | 78, 101, 1524, 3816, 4254, 4824, 6283 |
| Bbv12I | GWGCWC | 3 cut(s) | 20, 1324, 4612 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4070, 4104 |
| BciT130I | CCWGG | 6 cut(s) | 1044, 1774, 4359, 4490, 5273, 5916 |
| BciVI | GTATCC | 4 cut(s) | 320, 1534, 1549, 4750 |
| BclI | TGATCA | 4 cut(s) | 3249, 4768, 4912, 6208 |
| BcnI | CCSGG | 2 cut(s) | 633, 2536 |
| BcuI | ACTAGT | 1 cut(s) | 1559 |
| BfmI | CTRYAG | 7 cut(s) | 1136, 1791, 3174, 3924, 4572, 5673, 6741 |
| BfrI | CTTAAG | 2 cut(s) | 4906, 4928 |
| BfuAI | ACCTGC | 3 cut(s) | 1399, 5287, 6734 |
| BfuI | GTATCC | 4 cut(s) | 320, 1534, 1549, 4750 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3613 |
| BglII | AGATCT | 4 cut(s) | 1257, 1399, 4219, 6326 |
| Bme1390I | CCNGG | 8 cut(s) | 633, 1044, 1774, 2536, 4359, 4490, 5273, 5916 |
| Bme18I | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2170, 4352, 5579, 6254 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 4930, 5536, 5571 |
| BmeT110I | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| BmrFI | CCNGG | 8 cut(s) | 633, 1044, 1774, 2536, 4359, 4490, 5273, 5916 |
| BmrI | ACTGGG | 4 cut(s) | 1076, 2390, 5432, 6049 |
| BmuI | ACTGGG | 4 cut(s) | 1076, 2390, 5432, 6049 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2468, 5481 |
| BpiI | GAAGAC | 7 cut(s) | 78, 101, 1524, 3816, 4254, 4824, 6283 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 5973, 6005 |
| BpmI | CTGGAG | 5 cut(s) | 239, 864, 4341, 5589, 6110 |
| Bpu14I | TTCGAA | 1 cut(s) | 1906 |
| BpuEI | CTTGAG | 5 cut(s) | 1006, 2170, 2882, 5250, 5672 |
| BpuMI | CCSGG | 2 cut(s) | 633, 2536 |
| Bsa29I | ATCGAT | 2 cut(s) | 2119, 6698 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3888 |
| BsaHI | GRCGYC | 1 cut(s) | 3481 |
| BsaI | GGTCTC | 2 cut(s) | 5160, 6697 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1024, 1054 |
| Bse118I | RCCGGY | 1 cut(s) | 2332 |
| Bse21I | CCTNAGG | 1 cut(s) | 2442 |
| Bse3DI | GCAATG | 4 cut(s) | 134, 311, 4400, 6405 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3888 |
| BseBI | CCWGG | 6 cut(s) | 1044, 1774, 4359, 4490, 5273, 5916 |
| BseCI | ATCGAT | 2 cut(s) | 2119, 6698 |
| BseJI | GATNNNNATC | 1 cut(s) | 3888 |
| BseMI | GCAATG | 4 cut(s) | 134, 311, 4400, 6405 |
| BseRI | GAGGAG | 7 cut(s) | 252, 295, 727, 1187, 2762, 4404, 6558 |
| BseSI | GKGCMC | 3 cut(s) | 20, 1324, 1336 |
| BseYI | CCCAGC | 1 cut(s) | 324 |
| BsgI | GTGCAG | 5 cut(s) | 839, 1767, 5422, 5895, 6237 |
| Bsh1236I | CGCG | 1 cut(s) | 1711 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 4873 |
| BshNI | GGYRCC | 1 cut(s) | 5706 |
| BshVI | ATCGAT | 2 cut(s) | 2119, 6698 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 4873 |
| BsiHKAI | GWGCWC | 3 cut(s) | 20, 1324, 4612 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| BsiSI | CCGG | 3 cut(s) | 632, 2333, 2535 |
| BslFI | GGGAC | 6 cut(s) | 535, 2686, 2909, 3379, 4219, 5629 |
| BsmFI | GGGAC | 6 cut(s) | 535, 2686, 2909, 3379, 4219, 5629 |
| BsmI | GAATGC | 2 cut(s) | 1626, 4991 |
| Bso31I | GGTCTC | 2 cut(s) | 5160, 6697 |
| BsoBI | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| Bsp119I | TTCGAA | 1 cut(s) | 1906 |
| Bsp120I | GGGCCC | 1 cut(s) | 1332 |
| Bsp1286I | GDGCHC | 4 cut(s) | 20, 1324, 1336, 4612 |
| Bsp1407I | TGTACA | 2 cut(s) | 1273, 4552 |
| Bsp19I | CCATGG | 3 cut(s) | 2742, 2937, 4657 |
| BspACI | CCGC | 9 cut(s) | 301, 829, 1431, 2133, 2473, 2927, 4418, 5107, 5611 |
| BspDI | ATCGAT | 2 cut(s) | 2119, 6698 |
| BspFNI | CGCG | 1 cut(s) | 1711 |
| BspHI | TCATGA | 3 cut(s) | 2581, 3907, 5560 |
| BspMAI | CTGCAG | 3 cut(s) | 1140, 5677, 6745 |
| BspMI | ACCTGC | 3 cut(s) | 1399, 5287, 6734 |
| BspQI | GCTCTTC | 1 cut(s) | 1764 |
| BspT104I | TTCGAA | 1 cut(s) | 1906 |
| BspT107I | GGYRCC | 1 cut(s) | 5706 |
| BspTI | CTTAAG | 2 cut(s) | 4906, 4928 |
| BspTNI | GGTCTC | 2 cut(s) | 5160, 6697 |
| BsrDI | GCAATG | 4 cut(s) | 134, 311, 4400, 6405 |
| BsrFI | RCCGGY | 1 cut(s) | 2332 |
| BsrGI | TGTACA | 2 cut(s) | 1273, 4552 |
| BssAI | RCCGGY | 1 cut(s) | 2332 |
| BssNI | GRCGYC | 1 cut(s) | 3481 |
| BssSI | CACGAG | 1 cut(s) | 19 |
| Bst2BI | CACGAG | 1 cut(s) | 19 |
| Bst2UI | CCWGG | 6 cut(s) | 1044, 1774, 4359, 4490, 5273, 5916 |
| Bst6I | CTCTTC | 9 cut(s) | 19, 219, 658, 1542, 1764, 1899, 2938, 3828, 5301 |
| BstACI | GRCGYC | 1 cut(s) | 3481 |
| BstAFI | CTTAAG | 2 cut(s) | 4906, 4928 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 745, 4406, 4847 |
| BstAUI | TGTACA | 2 cut(s) | 1273, 4552 |
| BstBI | TTCGAA | 1 cut(s) | 1906 |
| BstDSI | CCRYGG | 3 cut(s) | 2742, 2937, 4657 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1202 |
| BstFNI | CGCG | 1 cut(s) | 1711 |
| BstHHI | GCGC | 5 cut(s) | 672, 1176, 1711, 2014, 6249 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 4873 |
| BstNI | CCWGG | 6 cut(s) | 1044, 1774, 4359, 4490, 5273, 5916 |
| BstNSI | RCATGY | 7 cut(s) | 769, 2159, 2679, 4085, 4950, 5410, 6416 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2468, 5481 |
| BstSCI | CCNGG | 8 cut(s) | 631, 1042, 1772, 2534, 4357, 4488, 5271, 5914 |
| BstSFI | CTRYAG | 7 cut(s) | 1136, 1791, 3174, 3924, 4572, 5673, 6741 |
| BstSLI | GKGCMC | 3 cut(s) | 20, 1324, 1336 |
| BstUI | CGCG | 1 cut(s) | 1711 |
| BstV2I | GAAGAC | 7 cut(s) | 78, 101, 1524, 3816, 4254, 4824, 6283 |
| Bsu15I | ATCGAT | 2 cut(s) | 2119, 6698 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2442 |
| BsuI | GTATCC | 4 cut(s) | 320, 1534, 1549, 4750 |
| BsuTUI | ATCGAT | 2 cut(s) | 2119, 6698 |
| BtgI | CCRYGG | 3 cut(s) | 2742, 2937, 4657 |
| BtsI | GCAGTG | 3 cut(s) | 1976, 2343, 4841 |
| BveI | ACCTGC | 3 cut(s) | 1399, 5287, 6734 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1773, 2206, 2264, 2411, 4364 |
| CciI | TCATGA | 3 cut(s) | 2581, 3907, 5560 |
| CfoI | GCGC | 5 cut(s) | 672, 1176, 1711, 2014, 6249 |
| Cfr10I | RCCGGY | 1 cut(s) | 2332 |
| ClaI | ATCGAT | 2 cut(s) | 2119, 6698 |
| CseI | GACGC | 1 cut(s) | 3489 |
| DraI | TTTAAA | 4 cut(s) | 3319, 3790, 5307, 5698 |
| DraIII | CACNNNGTG | 1 cut(s) | 4847 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3353 |
| DriI | GACNNNNNGTC | 3 cut(s) | 4930, 5536, 5571 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3353 |
| EaeI | YGGCCR | 5 cut(s) | 3, 3568, 4386, 5431, 6364 |
| Eam1104I | CTCTTC | 9 cut(s) | 19, 219, 658, 1542, 1764, 1899, 2938, 3828, 5301 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 4930, 5536, 5571 |
| EarI | CTCTTC | 9 cut(s) | 19, 219, 658, 1542, 1764, 1899, 2938, 3828, 5301 |
| Eco147I | AGGCCT | 1 cut(s) | 2853 |
| Eco24I | GRGCYC | 1 cut(s) | 1336 |
| Eco31I | GGTCTC | 2 cut(s) | 5160, 6697 |
| Eco32I | GATATC | 1 cut(s) | 4150 |
| Eco47I | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2170, 4352, 5579, 6254 |
| Eco57I | CTGAAG | 9 cut(s) | 513, 1210, 1566, 2109, 2868, 3015, 4268, 4277, 5282 |
| Eco81I | CCTNAGG | 1 cut(s) | 2442 |
| Eco88I | CYCGRG | 3 cut(s) | 1007, 1602, 2480 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1202 |
| EcoO109I | RGGNCCY | 5 cut(s) | 209, 549, 1333, 4352, 6254 |
| EcoRI | GAATTC | 1 cut(s) | 5629 |
| EcoRII | CCWGG | 6 cut(s) | 1042, 1772, 4357, 4488, 5271, 5914 |
| EcoRV | GATATC | 1 cut(s) | 4150 |
| EcoT22I | ATGCAT | 3 cut(s) | 600, 646, 5502 |
| EcoT38I | GRGCYC | 1 cut(s) | 1336 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2042, 2074, 2275, 2307 |
| FaqI | GGGAC | 6 cut(s) | 535, 2686, 2909, 3379, 4219, 5629 |
| FauI | CCCGC | 2 cut(s) | 2934, 5604 |
| FauNDI | CATATG | 4 cut(s) | 839, 1326, 4604, 5480 |
| FbaI | TGATCA | 4 cut(s) | 3249, 4768, 4912, 6208 |
| FblI | GTMKAC | 5 cut(s) | 723, 1031, 1656, 2367, 4869 |
| FriOI | GRGCYC | 1 cut(s) | 1336 |
| GlaI | GCGC | 5 cut(s) | 671, 1175, 1710, 2013, 6248 |
| GsaI | CCCAGC | 1 cut(s) | 328 |
| GsuI | CTGGAG | 5 cut(s) | 239, 864, 4341, 5589, 6110 |
| HapII | CCGG | 3 cut(s) | 632, 2333, 2535 |
| HgaI | GACGC | 1 cut(s) | 3489 |
| HhaI | GCGC | 5 cut(s) | 672, 1176, 1711, 2014, 6249 |
| Hin1I | GRCGYC | 1 cut(s) | 3481 |
| Hin6I | GCGC | 5 cut(s) | 670, 1174, 1709, 2012, 6247 |
| HinP1I | GCGC | 5 cut(s) | 670, 1174, 1709, 2012, 6247 |
| HincII | GTYRAC | 6 cut(s) | 1657, 1923, 3133, 4280, 4870, 5313 |
| HindII | GTYRAC | 6 cut(s) | 1657, 1923, 3133, 4280, 4870, 5313 |
| HindIII | AAGCTT | 4 cut(s) | 1999, 2796, 3119, 3378 |
| HpaI | GTTAAC | 1 cut(s) | 1923 |
| HpaII | CCGG | 3 cut(s) | 632, 2333, 2535 |
| Hpy99I | CGWCG | 2 cut(s) | 80, 5534 |
| HpyCH4IV | ACGT | 6 cut(s) | 100, 1034, 4069, 4774, 4897, 5416 |
| HpySE526I | ACGT | 6 cut(s) | 100, 1034, 4069, 4774, 4897, 5416 |
| Hsp92I | GRCGYC | 1 cut(s) | 3481 |
| HspAI | GCGC | 5 cut(s) | 670, 1174, 1709, 2012, 6247 |
| KflI | GGGWCCC | 1 cut(s) | 549 |
| KpnI | GGTACC | 1 cut(s) | 5710 |
| Ksp22I | TGATCA | 4 cut(s) | 3249, 4768, 4912, 6208 |
| KspAI | GTTAAC | 1 cut(s) | 1923 |
| LguI | GCTCTTC | 1 cut(s) | 1764 |
| LmnI | GCTCC | 5 cut(s) | 1045, 2775, 3523, 4246, 5614 |
| MaeII | ACGT | 6 cut(s) | 100, 1034, 4069, 4774, 4897, 5416 |
| MfeI | CAATTG | 2 cut(s) | 4761, 4836 |
| MhlI | GDGCHC | 4 cut(s) | 20, 1324, 1336, 4612 |
| MlsI | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| MluNI | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| MmeI | TCCRAC | 7 cut(s) | 519, 750, 1829, 2197, 3736, 3759, 4690 |
| Mox20I | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| Mph1103I | ATGCAT | 3 cut(s) | 600, 646, 5502 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4328, 5923 |
| MscI | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| MslI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1327, 1631, 2731, 5505, 6288 |
| Msp20I | TGGCCA | 5 cut(s) | 5, 3570, 4388, 5433, 6366 |
| MspA1I | CMGCKG | 3 cut(s) | 823, 1433, 2135 |
| MspCI | CTTAAG | 2 cut(s) | 4906, 4928 |
| MspI | CCGG | 3 cut(s) | 632, 2333, 2535 |
| MspR9I | CCNGG | 8 cut(s) | 633, 1044, 1774, 2536, 4359, 4490, 5273, 5916 |
| MunI | CAATTG | 2 cut(s) | 4761, 4836 |
| Mva1269I | GAATGC | 2 cut(s) | 1626, 4991 |
| MvaI | CCWGG | 6 cut(s) | 1044, 1774, 4359, 4490, 5273, 5916 |
| MvnI | CGCG | 1 cut(s) | 1711 |
| NciI | CCSGG | 2 cut(s) | 633, 2536 |
| NcoI | CCATGG | 3 cut(s) | 2742, 2937, 4657 |
| NdeI | CATATG | 4 cut(s) | 839, 1326, 4604, 5480 |
| NmeAIII | GCCGAG | 1 cut(s) | 6638 |
| NmuCI | GTSAC | 3 cut(s) | 101, 421, 1207 |
| NsiI | ATGCAT | 3 cut(s) | 600, 646, 5502 |
| NspI | RCATGY | 7 cut(s) | 769, 2159, 2679, 4085, 4950, 5410, 6416 |
| NspV | TTCGAA | 1 cut(s) | 1906 |
| OliI | CACNNNNGTG | 1 cut(s) | 1327 |
| PaeI | GCATGC | 1 cut(s) | 4085 |
| PaeR7I | CTCGAG | 1 cut(s) | 2480 |
| PagI | TCATGA | 3 cut(s) | 2581, 3907, 5560 |
| PaqCI | CACCTGC | 1 cut(s) | 6734 |
| PceI | AGGCCT | 1 cut(s) | 2853 |
| PciI | ACATGT | 3 cut(s) | 2675, 4946, 6412 |
| PciSI | GCTCTTC | 1 cut(s) | 1764 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 2 cut(s) | 1626, 4991 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4328, 5923 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1638, 1811, 4364 |
| PfoI | TCCNGGA | 1 cut(s) | 2534 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 3 cut(s) | 549, 4352, 6254 |
| PscI | ACATGT | 3 cut(s) | 2675, 4946, 6412 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2468, 5481 |
| PshBI | ATTAAT | 1 cut(s) | 5073 |
| PsiI | TTATAA | 2 cut(s) | 2526, 6083 |
| Psp1406I | AACGTT | 2 cut(s) | 4774, 5416 |
| Psp5II | RGGWCCY | 3 cut(s) | 549, 4352, 6254 |
| Psp6I | CCWGG | 6 cut(s) | 1042, 1772, 4357, 4488, 5271, 5914 |
| PspFI | CCCAGC | 1 cut(s) | 324 |
| PspGI | CCWGG | 6 cut(s) | 1042, 1772, 4357, 4488, 5271, 5914 |
| PspOMI | GGGCCC | 1 cut(s) | 1332 |
| PspPPI | RGGWCCY | 3 cut(s) | 549, 4352, 6254 |
| PstI | CTGCAG | 3 cut(s) | 1140, 5677, 6745 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1773, 2206, 2264, 2411, 4364 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| PvuII | CAGCTG | 1 cut(s) | 823 |
| RseI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1327, 1631, 2731, 5505, 6288 |
| SalI | GTCGAC | 2 cut(s) | 1655, 4868 |
| SapI | GCTCTTC | 1 cut(s) | 1764 |
| ScrFI | CCNGG | 8 cut(s) | 633, 1044, 1774, 2536, 4359, 4490, 5273, 5916 |
| SduI | GDGCHC | 4 cut(s) | 20, 1324, 1336, 4612 |
| SfcI | CTRYAG | 7 cut(s) | 1136, 1791, 3174, 3924, 4572, 5673, 6741 |
| Sfr274I | CTCGAG | 1 cut(s) | 2480 |
| SfuI | TTCGAA | 1 cut(s) | 1906 |
| SinI | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2170, 4352, 5579, 6254 |
| SlaI | CTCGAG | 1 cut(s) | 2480 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 764, 838, 945, 1327, 1631, 2731, 5505, 6288 |
| SmlI | CTYRAG | 8 cut(s) | 985, 2149, 2480, 2861, 4906, 4928, 5265, 5687 |
| SmoI | CTYRAG | 8 cut(s) | 985, 2149, 2480, 2861, 4906, 4928, 5265, 5687 |
| SpeI | ACTAGT | 1 cut(s) | 1559 |
| SphI | GCATGC | 1 cut(s) | 4085 |
| SseBI | AGGCCT | 1 cut(s) | 2853 |
| SsiI | CCGC | 9 cut(s) | 301, 829, 1431, 2133, 2473, 2927, 4418, 5107, 5611 |
| StuI | AGGCCT | 1 cut(s) | 2853 |
| StyD4I | CCNGG | 8 cut(s) | 631, 1042, 1772, 2534, 4357, 4488, 5271, 5914 |
| TaiI | ACGT | 6 cut(s) | 103, 1037, 4072, 4777, 4900, 5419 |
| TaqII | GACCGA | 1 cut(s) | 54 |
| TatI | WGTACW | 5 cut(s) | 532, 1273, 4552, 6105, 6431 |
| TauI | GCSGC | 2 cut(s) | 304, 1433 |
| TseFI | GTSAC | 3 cut(s) | 101, 421, 1207 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 421, 1207 |
| TspGWI | ACGGA | 5 cut(s) | 2346, 2866, 4333, 6344, 6356 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1638, 1811, 4364 |
| Vha464I | CTTAAG | 2 cut(s) | 4906, 4928 |
| VneI | GTGCAC | 2 cut(s) | 16, 1320 |
| VpaK11BI | GGWCC | 8 cut(s) | 37, 380, 549, 826, 2170, 4352, 5579, 6254 |
| VspI | ATTAAT | 1 cut(s) | 5073 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1202 |
| XbaI | TCTAGA | 3 cut(s) | 1610, 3814, 4855 |
| XceI | RCATGY | 7 cut(s) | 769, 2159, 2679, 4085, 4950, 5410, 6416 |
| XcmI | CCANNNNNNNNNTGG | 6 cut(s) | 820, 1770, 1812, 4664, 5329, 6134 |
| XhoI | CTCGAG | 1 cut(s) | 2480 |
| XmiI | GTMKAC | 5 cut(s) | 723, 1031, 1656, 2367, 4869 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4328, 5923 |
| Zsp2I | ATGCAT | 3 cut(s) | 600, 646, 5502 |