Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Reverse (-)

25110698 .. 25114564

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAAAATTAAGTTTAGCGCCTTTTTGTTGAAGCGAAAGCGTGCAGCGACTGTAATTCCAATCCAAGAGCTGCGTCACCTTCAAACCTCTGAAAACTCGCTCACAGAAAGCCTCAAGAAATCCAAAACCTCTTCACACTCTCACATGTCTAAAACCCTTCTCTCTCGCATCAAACCCCTTCAAAACCGAAAGCCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCACCACCTCCCCACGTCAAGAGACTCGTCAATGACACCATCCAAATCCTCAGAACCCAACATCATTGGGAGCAATCTCTCGAAACCCAATTCTCCGAAACCGAAATGCTTGTTTCCGACGTTGCCCATTTCGTTTTGGACCGAGTGCACGATGTAGAATTGGGTTTGAAGTTCTTTGACTGGGCATTCAAGCGATCCTACTGCTGCTCTCCAGATGGGTCTGCGTATTCTTCGCTGTTAAAGCTTCTGGCGAGGTTTCGGGTGTTTTCGGAGATCGATTTGGTGATGGATAAGGTGAAATTGGAAGAAGTAAAGCCGACCCATGATGCGTTGAGCTTTGTAATTAGAGCTTATGCGGACTCTGGGATGGTTGGTAAAGCTCTTGACTTGTATGATATTGTGGTTAAGGTGTATGGTGTAGTTCCGAGTGTTTTCGCGTGTAATTCGTTGTTAAATGTTCTTGTGAAAAGTAGGAGAGTTGACGTTGCACGCCGGGTGTATGACGAAATGGCTGAGAGAGGTGGCCGTGAGCATTTGTGTATGGATAACTATAGTACTTGTATAATGGTGAAGGGGTTGTGTAAGGAAGGGAGGGTTGAGGAAGGTAGAAAATTAATTGTGGATAGGTGGGGAAAGAGTTGTGTACCAAATGTTGTTTTTTACAATACGCTTATTGACGGATATTGCAAAAAAGGTGATGTCGAAAGTGCTAATGTGATTTTTAAAGAGTTGAAATCGAAGGGGTTTTTGCCCACTCTGGAAACTTATGGAGCTATGATAAATGGGTATTGCAAAGAAGGAAAGTTTAAAGCGATTGATCGGCTTTTCATGGAAATGAAGGAGAGAGGCTTGCATATTAATGTTCAAGTACGTAATAATATTGTTGATGCTAGATGTAAGCATGGTAGCTTGGTTAAAGGAGTGGAGACAGTAAAGCAGATGATTGAGAGTGGTTGTGAGCCAGATATTACAACCTACAATATTTTGATTCATAATTCATGCAAGGGTGGGAAGGTTAAGGAAGCTGAACAGTTTATAAACCACGCGATGGAGAGAGGATTGGTGCCAAATAAATTTAGTTATACTCCTCTTTTTCACACTTATTTCAGACAACGGGAGCACAGAAGGGCCTTGGATTTGTTTACTAAGATTACAGAAAGAGGATACAAACCTGATCTGGTTTCTTATGGAGCTCTCATCCATGGACTTGTTGTTTCTGAGGAAGTCGATGTTGCAATGGCAGTTCAGGACAGAATGATGGAAAGTGGAGTAGTCCCTGATGCTCACATTTACAATGTTTTGATGAGTGGCCTTTGTAAGAAAGGGAGGCTTCCTACTGCCAAGTTGCTGCTTGGTCAGATGCTTGACCAAAATGTACCACCAGATGCATATGTTTATGCCACTCTGGTGGACGGGTTAATCAGAAATGGTGACCTTGAGGAAGCAAAAAATATATTTGGGTTAACTATTGAAAAGGGTCTAAACCCCGGTGTTGTGGGGTACAATGCTATGATTAAGGGTTTCTGCAAATTTGGAATGATGAAGGATGCACTTTCTTGCTTTGAGAAAATGCGGAAAGTGCATCATCGTCCTGATGGGTTCACGTATTCTACAATTATTGATGGGTATGTCAAGCAGCATAACTTGGATGCTGCTCTAAGTTTCTTTGAACTGATGGTCAAACAGGGATGCAAGCCAAATGTGGTCACATACACCTCCTTGATCTATGGGTTTTGCCACAAGGGAGATTCCTGCGGAGCTGTAAAAACTTTCAAAGAGATGAAATCCTGTGGCTTGGAGCCAAATGTAGTCACATATAGCATACTTATTGGAACATTTTGCAAGGAAGGTAACCTTGCAAATGCCGCCTCCTTTTTTGAACTAATGCTGAAGAAGAAGTGCATTCCTAATGACGTCACCTTCCATTATCTGGTAAATGGGTTCACAAACAATGAACCTGGTGCGATTCCGAAGGAAGTCAACGAGTCCCAACAAAATGAAAAATCTATTTTTCTGGGGGTTTTCAGAAGGATGATATCAGATGGATGGTTTCAAAAGGTTGCTGTTTATAATTCCATTATCATTTGCCTTTGCCATCATGGGATGGTTAAAACTGCATTACAGCTGTGTGAAAAGTATGTTAATAATGGCATCCTTCTAGATTCTGTTTCGTTTGCTGGTCTGCTGCATGGTATTTGTTTGGAAGGAAGATCCAAGGAATGGAAGAGCATCATCCCTTTTAACTTGAAGGATCGGGAATTCCAAACTGCTGTCAAATTCTCGCGTATAATAGATGATTACTTACATCAAGGAAGAGAATCTGAGGCTACACTTATTTTGCAGTCAATGGTTAACGATCTTATGTCTCGAGACCAAGAGGTGGATCTTAAAGACATAAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1 PPR PPR_1 PPR_2 PPR_3 p450

Protein Analysis

877

Amino Acids

98.95

Weight (kDa)

8.88

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	217 - 270	2e-08	PPR repeat family
PPR_1	PF12854	287 - 319	2.6e-11	PPR repeat
PPR_2	PF13041	291 - 340	2.2e-17	PPR repeat family
PPR_3	PF13812	291 - 339	1.1e-07	Pentatricopeptide repeat domain
PPR	PF01535	294 - 324	2.2e-08	PPR repeat
PPR_2	PF13041	327 - 363	1.1e-08	PPR repeat family
PPR	PF01535	330 - 359	6.4e-08	PPR repeat
PPR_3	PF13812	349 - 406	6.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	367 - 410	1.1e-08	PPR repeat family
PPR_1	PF12854	393 - 422	4.2e-09	PPR repeat
PPR_2	PF13041	397 - 442	1.3e-08	PPR repeat family
PPR_2	PF13041	431 - 478	3.2e-08	PPR repeat family
PPR_3	PF13812	455 - 511	8.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	498 - 529	9.6e-07	PPR repeat
PPR_2	PF13041	501 - 549	9.4e-11	PPR repeat family
PPR_3	PF13812	525 - 583	3.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	567 - 620	4.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	567 - 600	6.8e-09	PPR repeat
PPR_2	PF13041	571 - 618	3.3e-15	PPR repeat family
PPR	PF01535	576 - 601	1.3e-07	PPR repeat
PPR_long	PF17177	592 - 704	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	596 - 650	5.1e-10	Pentatricopeptide repeat domain
PPR	PF01535	609 - 639	5.2e-06	PPR repeat
PPR_2	PF13041	609 - 655	2.5e-16	PPR repeat family
PPR_3	PF13812	631 - 690	2.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	638 - 670	5.7e-10	PPR repeat
PPR_2	PF13041	641 - 690	1.9e-17	PPR repeat family
PPR_1	PF12854	673 - 704	2.2e-10	PPR repeat
PPR_2	PF13041	683 - 724	9.2e-08	PPR repeat family
PPR_2	PF13041	762 - 808	4.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1262, 2295
AatII	GACGTC	1 cut(s)	2142
AccB1I	GGYRCC	1 cut(s)	1288
AccB7I	CCANNNNNTGG	4 cut(s)	1273, 2155, 2445, 2605
AccII	CGCG	3 cut(s)	662, 1271, 2509
AciI	CCGC	4 cut(s)	581, 1798, 1980, 2091
AclWI	GGATC	4 cut(s)	414, 2430, 2484, 2616
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	4 cut(s)	1298, 1754, 2483, 2501
AcuI	CTGAAG	1 cut(s)	2135
AcyI	GRCGYC	1 cut(s)	2139
AfaI	GTAC	5 cut(s)	781, 870, 1095, 1602, 1727
AfiI	CCNNNNNNNGG	4 cut(s)	1273, 2155, 2445, 2605
AflIII	ACRYGT	1 cut(s)	144
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	2182
AleI	CACNNNNGTG	1 cut(s)	1631
Alw21I	GWGCWC	3 cut(s)	375, 1347, 1420
Alw26I	GTCTC	4 cut(s)	241, 1145, 2589, 2595
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	4 cut(s)	414, 2430, 2484, 2616
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	2592
AoxI	GGCC	3 cut(s)	748, 1353, 1534
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	7 cut(s)	44, 70, 429, 1573, 1861, 1877, 2410
ApoI	RAATTY	4 cut(s)	1298, 1754, 2483, 2501
AseI	ATTAAT	2 cut(s)	839, 1083
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	364, 1353
AsuC2I	CCSGG	2 cut(s)	719, 1713
AsuHPI	GGTGA	7 cut(s)	68, 520, 532, 805, 932, 1667, 2134
AvaI	CYCGRG	1 cut(s)	2592
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	1288
BanII	GRGCYC	1 cut(s)	1420
Bbv12I	GWGCWC	3 cut(s)	375, 1347, 1420
BbvI	GCAGC	7 cut(s)	56, 57, 416, 1560, 1864, 1873, 2397
BceAI	ACGGC	1 cut(s)	735
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	2184
BciVI	GTATCC	1 cut(s)	1382
BcnI	CCSGG	2 cut(s)	719, 1713
BcoDI	GTCTC	4 cut(s)	241, 1145, 2589, 2595
BfaI	CTAG	2 cut(s)	1116, 2384
BfmI	CTRYAG	1 cut(s)	775
BfoI	RGCGCY	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	1382
BisI	GCNGC	8 cut(s)	45, 71, 430, 1574, 1862, 1878, 2091, 2411
BlsI	GCNGC	8 cut(s)	46, 72, 431, 1575, 1863, 1879, 2092, 2412
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	3 cut(s)	719, 1713, 2184
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	2592
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	364, 1353
BmiI	GGNNCC	2 cut(s)	1290, 2025
BmrFI	CCNGG	3 cut(s)	719, 1713, 2184
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	98, 1682
BpuMI	CCSGG	2 cut(s)	719, 1713
Bsa29I	ATCGAT	1 cut(s)	501
BsaAI	YACGTR	2 cut(s)	1097, 1830
BsaHI	GRCGYC	1 cut(s)	2139
BsaI	GGTCTC	1 cut(s)	2589
BsaJI	CCNNGG	4 cut(s)	1356, 1426, 1711, 2439
Bsc4I	CCNNNNNNNGG	4 cut(s)	1273, 2155, 2445, 2605
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	1467
BseBI	CCWGG	1 cut(s)	2184
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	1356, 1426, 1711, 2439
BseLI	CCNNNNNNNGG	4 cut(s)	1273, 2155, 2445, 2605
BseMI	GCAATG	1 cut(s)	1467
BseMII	CTCAG	4 cut(s)	289, 729, 1434, 2538
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	1302
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	7 cut(s)	56, 57, 416, 1560, 1864, 1873, 2397
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	3 cut(s)	662, 1271, 2509
BshFI	GGCC	3 cut(s)	750, 1355, 1536
BshNI	GGYRCC	1 cut(s)	1288
BshVI	ATCGAT	1 cut(s)	501
BsiHKAI	GWGCWC	3 cut(s)	375, 1347, 1420
BsiHKCI	CYCGRG	1 cut(s)	2592
BsiSI	CCGG	2 cut(s)	718, 1713
BslFI	GGGAC	2 cut(s)	1484, 2197
BslI	CCNNNNNNNGG	4 cut(s)	1273, 2155, 2445, 2605
BsmAI	GTCTC	4 cut(s)	241, 1145, 2589, 2595
BsmFI	GGGAC	2 cut(s)	1484, 2197
BsmI	GAATGC	2 cut(s)	410, 2127
BsnI	GGCC	3 cut(s)	750, 1355, 1536
Bso31I	GGTCTC	1 cut(s)	2589
BsoBI	CYCGRG	1 cut(s)	2592
Bsp1286I	GDGCHC	3 cut(s)	375, 1347, 1420
Bsp143I	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	4 cut(s)	581, 1798, 1980, 2091
BspANI	GGCC	3 cut(s)	750, 1355, 1536
BspCNI	CTCAG	4 cut(s)	288, 730, 1435, 2539
BspDI	ATCGAT	1 cut(s)	501
BspFNI	CGCG	3 cut(s)	662, 1271, 2509
BspLI	GGNNCC	2 cut(s)	1290, 2025
BspPI	GGATC	4 cut(s)	414, 2430, 2484, 2616
BspQI	GCTCTTC	1 cut(s)	2444
BspT107I	GGYRCC	1 cut(s)	1288
BspTNI	GGTCTC	1 cut(s)	2589
BsrDI	GCAATG	1 cut(s)	1467
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	4 cut(s)	1356, 1426, 1711, 2439
BssMI	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
BssNI	GRCGYC	1 cut(s)	2139
BssT1I	CCWWGG	3 cut(s)	1356, 1426, 2439
Bst2UI	CCWGG	1 cut(s)	2184
Bst4CI	ACNGT	3 cut(s)	52, 1156, 1257
Bst6I	CTCTTC	3 cut(s)	136, 2444, 2533
BstACI	GRCGYC	1 cut(s)	2139
BstBAI	YACGTR	2 cut(s)	1097, 1830
BstC8I	GCNNGC	4 cut(s)	42, 715, 1076, 1919
BstDEI	CTNAG	6 cut(s)	275, 738, 1371, 1443, 1883, 2547
BstDSI	CCRYGG	1 cut(s)	1426
BstEII	GGTNACC	2 cut(s)	1655, 2075
BstFNI	CGCG	3 cut(s)	662, 1271, 2509
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	9 cut(s)	422, 501, 1045, 1402, 1950, 2438, 2479, 2584, 2611
BstMAI	GTCTC	4 cut(s)	241, 1145, 2589, 2595
BstMBI	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 1804, 2090
BstNI	CCWGG	1 cut(s)	2184
BstNSI	RCATGY	1 cut(s)	148
BstPI	GGTNACC	2 cut(s)	1655, 2075
BstSCI	CCNGG	3 cut(s)	717, 1711, 2182
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	1097
BstUI	CGCG	3 cut(s)	662, 1271, 2509
BstV1I	GCAGC	7 cut(s)	56, 57, 416, 1560, 1864, 1873, 2397
BstX2I	RGATCY	2 cut(s)	2435, 2608
BstXI	CCANNNNNNTGG	1 cut(s)	1633
BstYI	RGATCY	2 cut(s)	2435, 2608
Bsu15I	ATCGAT	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	1382
BsuRI	GGCC	3 cut(s)	750, 1355, 1536
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	1426
BtgZI	GCGATG	1 cut(s)	1286
BtrI	CACGTC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	42, 715, 1076, 1919
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	364, 1353
ClaI	ATCGAT	1 cut(s)	501
CseI	GACGC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	2182
Csp6I	GTAC	5 cut(s)	780, 869, 1094, 1601, 1726
CviAII	CATG	8 cut(s)	145, 548, 1054, 1127, 1224, 1427, 2324, 2414
CviQI	GTAC	5 cut(s)	780, 869, 1094, 1601, 1726
DdeI	CTNAG	6 cut(s)	275, 738, 1371, 1443, 1883, 2547
DpnI	GATC	9 cut(s)	421, 500, 1044, 1401, 1949, 2437, 2478, 2583, 2610
DpnII	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
DraI	TTTAAA	2 cut(s)	949, 1033
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	3 cut(s)	136, 2444, 2533
EarI	CTCTTC	3 cut(s)	136, 2444, 2533
Ecl136II	GAGCTC	1 cut(s)	1418
Eco105I	TACGTA	1 cut(s)	1097
Eco130I	CCWWGG	3 cut(s)	1356, 1426, 2439
Eco24I	GRGCYC	1 cut(s)	1420
Eco31I	GGTCTC	1 cut(s)	2589
Eco32I	GATATC	1 cut(s)	2262
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	1418
Eco57I	CTGAAG	1 cut(s)	2135
Eco88I	CYCGRG	1 cut(s)	2592
Eco91I	GGTNACC	2 cut(s)	1655, 2075
EcoICRI	GAGCTC	1 cut(s)	1418
EcoO109I	RGGNCCY	1 cut(s)	1353
EcoO65I	GGTNACC	2 cut(s)	1655, 2075
EcoRI	GAATTC	1 cut(s)	2483
EcoRII	CCWGG	1 cut(s)	2182
EcoRV	GATATC	1 cut(s)	2262
EcoT14I	CCWWGG	3 cut(s)	1356, 1426, 2439
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	1 cut(s)	1420
ErhI	CCWWGG	3 cut(s)	1356, 1426, 2439
FaeI	CATG	8 cut(s)	148, 551, 1057, 1130, 1227, 1430, 2327, 2417
FalI	AAGNNNNNCTT	4 cut(s)	1539, 1571, 2064, 2096
FaqI	GGGAC	2 cut(s)	1484, 2197
FatI	CATG	8 cut(s)	144, 547, 1053, 1126, 1223, 1426, 2323, 2413
FauNDI	CATATG	1 cut(s)	1615
Fnu4HI	GCNGC	8 cut(s)	45, 71, 430, 1574, 1862, 1878, 2091, 2411
FriOI	GRGCYC	1 cut(s)	1420
Fsp4HI	GCNGC	8 cut(s)	45, 71, 430, 1574, 1862, 1878, 2091, 2411
FspBI	CTAG	2 cut(s)	1116, 2384
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	8 cut(s)	45, 71, 430, 1574, 1862, 1878, 2091, 2411
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	750, 1355, 1536
HapII	CCGG	2 cut(s)	718, 1713
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	2139
Hin1II	CATG	8 cut(s)	148, 551, 1057, 1130, 1227, 1430, 2327, 2417
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	4 cut(s)	706, 1689, 2206, 2578
HindII	GTYRAC	4 cut(s)	706, 1689, 2206, 2578
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	8 cut(s)	249, 584, 1213, 1973, 2191, 2210, 2387, 2543
HpaI	GTTAAC	2 cut(s)	1689, 2578
HpaII	CCGG	2 cut(s)	718, 1713
HphI	GGTGA	7 cut(s)	68, 520, 532, 805, 932, 1667, 2134
Hpy99I	CGWCG	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	52, 1156, 1257
HpyCH4IV	ACGT	6 cut(s)	240, 345, 708, 1096, 1829, 2139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 1804, 2090
HpyF3I	CTNAG	6 cut(s)	275, 738, 1371, 1443, 1883, 2547
HpySE526I	ACGT	6 cut(s)	240, 345, 708, 1096, 1829, 2139
Hsp92I	GRCGYC	1 cut(s)	2139
Hsp92II	CATG	8 cut(s)	148, 551, 1057, 1130, 1227, 1430, 2327, 2417
HspAI	GCGC	1 cut(s)	18
KspAI	GTTAAC	2 cut(s)	1689, 2578
Kzo9I	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
LguI	GCTCTTC	1 cut(s)	2444
LmnI	GCTCC	6 cut(s)	295, 995, 1342, 1415, 1982, 2023
Lsp1109I	GCAGC	7 cut(s)	56, 57, 416, 1560, 1864, 1873, 2397
MabI	ACCWGGT	1 cut(s)	2182
MaeI	CTAG	2 cut(s)	1116, 2384
MaeII	ACGT	6 cut(s)	240, 345, 708, 1096, 1829, 2139
MaeIII	GTNAC	6 cut(s)	74, 1655, 1930, 2035, 2075, 2140
MalI	GATC	9 cut(s)	421, 500, 1044, 1401, 1949, 2437, 2478, 2583, 2610
MboI	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
MflI	RGATCY	2 cut(s)	2435, 2608
MhlI	GDGCHC	3 cut(s)	375, 1347, 1420
MlyI	GAGTC	3 cut(s)	243, 578, 2219
MmeI	TCCRAC	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	1615
MslI	CAYNNNNRTG	3 cut(s)	1058, 1083, 1631
MspA1I	CMGCKG	1 cut(s)	2350
MspI	CCGG	2 cut(s)	718, 1713
MspR9I	CCNGG	3 cut(s)	719, 1713, 2184
Mva1269I	GAATGC	2 cut(s)	410, 2127
MvaI	CCWGG	1 cut(s)	2184
MvnI	CGCG	3 cut(s)	662, 1271, 2509
MwoI	GCNNNNNNNGC	3 cut(s)	466, 1804, 2090
NciI	CCSGG	2 cut(s)	719, 1713
NcoI	CCATGG	1 cut(s)	1426
NdeI	CATATG	1 cut(s)	1615
NdeII	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
NlaIII	CATG	8 cut(s)	148, 551, 1057, 1130, 1227, 1430, 2327, 2417
NlaIV	GGNNCC	2 cut(s)	1290, 2025
NmuCI	GTSAC	5 cut(s)	74, 1655, 1930, 2035, 2140
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	1631
PaeR7I	CTCGAG	1 cut(s)	2592
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	2444
PctI	GAATGC	2 cut(s)	410, 2127
PfeI	GAWTC	5 cut(s)	1213, 1973, 2191, 2387, 2543
PflMI	CCANNNNNTGG	4 cut(s)	1273, 2155, 2445, 2605
PkrI	GCNGC	8 cut(s)	46, 72, 431, 1575, 1863, 1879, 2092, 2412
PleI	GAGTC	3 cut(s)	243, 578, 2218
PpsI	GAGTC	3 cut(s)	243, 578, 2218
Ppu21I	YACGTR	2 cut(s)	1097, 1830
PscI	ACATGT	1 cut(s)	144
PshBI	ATTAAT	2 cut(s)	839, 1083
PsiI	TTATAA	2 cut(s)	1262, 2295
Psp124BI	GAGCTC	1 cut(s)	1420
Psp6I	CCWGG	1 cut(s)	2182
PspEI	GGTNACC	2 cut(s)	1655, 2075
PspGI	CCWGG	1 cut(s)	2182
PspN4I	GGNNCC	2 cut(s)	1290, 2025
PspPI	GGNCC	2 cut(s)	364, 1353
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	2435, 2608
PvuII	CAGCTG	1 cut(s)	2350
RsaI	GTAC	5 cut(s)	781, 870, 1095, 1602, 1727
RsaNI	GTAC	5 cut(s)	780, 869, 1094, 1601, 1726
RseI	CAYNNNNRTG	3 cut(s)	1058, 1083, 1631
SacI	GAGCTC	1 cut(s)	1420
SapI	GCTCTTC	1 cut(s)	2444
SatI	GCNGC	8 cut(s)	45, 71, 430, 1574, 1862, 1878, 2091, 2411
Sau3AI	GATC	9 cut(s)	419, 498, 1042, 1399, 1947, 2435, 2476, 2581, 2608
Sau96I	GGNCC	2 cut(s)	364, 1353
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	3 cut(s)	243, 578, 2219
ScrFI	CCNGG	3 cut(s)	719, 1713, 2184
SduI	GDGCHC	3 cut(s)	375, 1347, 1420
SexAI	ACCWGGT	1 cut(s)	2182
SfcI	CTRYAG	1 cut(s)	775
Sfr274I	CTCGAG	1 cut(s)	2592
SinI	GGWCC	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	2592
SmiMI	CAYNNNNRTG	3 cut(s)	1058, 1083, 1631
SmlI	CTYRAG	3 cut(s)	113, 1661, 2592
SmoI	CTYRAG	3 cut(s)	113, 1661, 2592
SnaBI	TACGTA	1 cut(s)	1097
SsiI	CCGC	4 cut(s)	581, 1798, 1980, 2091
SspI	AATATT	2 cut(s)	1105, 1207
SspMI	CTAG	2 cut(s)	1116, 2384
SstI	GAGCTC	1 cut(s)	1420
StyD4I	CCNGG	3 cut(s)	717, 1711, 2182
StyI	CCWWGG	3 cut(s)	1356, 1426, 2439
TaaI	ACNGT	3 cut(s)	52, 1156, 1257
TaiI	ACGT	6 cut(s)	243, 348, 711, 1099, 1832, 2142
TaqI	TCGA	6 cut(s)	306, 501, 927, 962, 1452, 2593
TaqII	GACCGA	1 cut(s)	381
TatI	WGTACW	1 cut(s)	779
TauI	GCSGC	1 cut(s)	2093
TfiI	GAWTC	5 cut(s)	1213, 1973, 2191, 2387, 2543
TseFI	GTSAC	5 cut(s)	74, 1655, 1930, 2035, 2140
TseI	GCWGC	7 cut(s)	44, 70, 429, 1573, 1861, 1877, 2410
Tsp45I	GTSAC	5 cut(s)	74, 1655, 1930, 2035, 2140
TspDTI	ATGAA	9 cut(s)	17, 1042, 1076, 1205, 1212, 1781, 2021, 2193, 2238
TspGWI	ACGGA	1 cut(s)	918
Van91I	CCANNNNNTGG	4 cut(s)	1273, 2155, 2445, 2605
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	364
VspI	ATTAAT	2 cut(s)	839, 1083
XapI	RAATTY	4 cut(s)	1298, 1754, 2483, 2501
XbaI	TCTAGA	1 cut(s)	2383
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	2592
XspI	CTAG	2 cut(s)	1116, 2384
ZraI	GACGTC	1 cut(s)	2140
ZrmI	AGTACT	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.