Rmu_sc0002986.1_g000009

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
OG0010927
Physical Location & Seq
Forward (+)
30538 .. 30894
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000009.1.cds

Sequence Viewer

Length: 276 bp
atggtggaagatggttgcgctgagaatgcaatttctttgctgatcttggccagtagcattctaggcaaggttctcaagtactgcaagaagcacatagatgacaaggaggcaaactatcttagcaatgctgggctgctggatttgacatgtcagactgtggcgaacatgatcaagggaatgattcctagagagattcacaagactttcaacatcaagaatgacttcactcctgagggaagaagaggttccgaaggagaaccaataggttttctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

91

Amino Acids

10.01

Weight (kDa)

6.07

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 1 cut(s) 208
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 133
Asp700I GAANNNNTTC 2 cut(s) 221, 244
AspLEI GCGC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 231
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 5
BclI TGATCA 1 cut(s) 168
BfaI CTAG 2 cut(s) 62, 186
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 12, 222
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 50
BsmI GAATGC 2 cut(s) 31, 57
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 42, 168
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 13, 223
BspLI GGNNCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 51
BssMI GATC 2 cut(s) 42, 168
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 21, 119, 231
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 45, 171
BstMBI GATC 2 cut(s) 42, 168
BstMWI GCNNNNNNNGC 2 cut(s) 26, 63
BstNSI RCATGY 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 50
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 147, 166
CviJI RGCY 2 cut(s) 50, 133
CviKI_1 RGCY 2 cut(s) 50, 133
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 21, 119, 231
DpnI GATC 2 cut(s) 44, 170
DpnII GATC 2 cut(s) 42, 168
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 231
FaeI CATG 2 cut(s) 150, 169
FaiI YATR 3 cut(s) 95, 148, 167
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FatI CATG 2 cut(s) 146, 165
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 62, 186
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 150, 169
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 2 cut(s) 181, 193
Hpy188I TCNGA 2 cut(s) 153, 250
Hpy188III TCNNGA 2 cut(s) 214, 230
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 29, 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 63
HpyF3I CTNAG 3 cut(s) 21, 119, 231
Hsp92II CATG 2 cut(s) 150, 169
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 2 cut(s) 42, 168
LpnPI CCDG 4 cut(s) 64, 114, 122, 243
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 2 cut(s) 62, 186
MalI GATC 2 cut(s) 44, 170
MboI GATC 2 cut(s) 42, 168
MboII GAAGA 3 cut(s) 20, 249, 252
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 3 cut(s) 100, 226, 236
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 221, 244
MscI TGGCCA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 50
Mva1269I GAATGC 2 cut(s) 31, 57
MwoI GCNNNNNNNGC 2 cut(s) 26, 63
NdeII GATC 2 cut(s) 42, 168
NlaIII CATG 2 cut(s) 150, 169
NlaIV GGNNCC 1 cut(s) 247
NspI RCATGY 1 cut(s) 150
PciI ACATGT 1 cut(s) 146
PctI GAATGC 2 cut(s) 31, 57
PdmI GAANNNNTTC 2 cut(s) 221, 244
PfeI GAWTC 2 cut(s) 181, 193
PkrI GCNGC 1 cut(s) 135
PscI ACATGT 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 42, 168
ScaI AGTACT 1 cut(s) 80
SetI ASST 3 cut(s) 72, 247, 268
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 62, 186
TaaI ACNGT 1 cut(s) 157
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 2 cut(s) 181, 193
TseI GCWGC 1 cut(s) 133
XceI RCATGY 1 cut(s) 150
XmnI GAANNNNTTC 2 cut(s) 221, 244
XspI CTAG 2 cut(s) 62, 186
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.