Rmu_sc0002986.1_g000008

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
Physical Location & Seq
Forward (+)
27101 .. 29572
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000008.1.cds

Sequence Viewer

Length: 2472 bp
atgtctaagactcttctctctcgcatcaaaccccttcacagccgcaaacccacttgtccatcttcctattcaccaccccacatcaagaagctagtctatgacaccatccggattctcagaacagatgataaatgggagcagtccctcgaaaccgaattctccgaaaccgaaacgcttgtttctgaagttgcccatttcgttttggacagaatgcccaatgcagagttgggtttgaagttctttgactgggctttccggcgaccctattgctgctctccaaatgggttggcgtattcttcactgttgaagcttttggcgaggtttggagtggttgcggagattgagttggtgctgcagagcatgaagttggaacaagtagagccgagtaaggatgctttgagctttgtgattcgagtttacgcggattctgggttcgtcgataaggctcttgaattgtatagttttggggtgaagctgtgtggttttgttccgagtgttttcgcatgcaattcgttgcttaacacgcttgtgaagattgggagagttgatgtcgcacgccaggtgtatgatgaaatgtctgagaaaggtggtggtgatggtgagcatgtgtgtatagataactacagtacttgtatcatggtgagggggttgtgtaaggaagggaaggttgaagaagggagaaggttgattgaggagaggtggggagagaattgtgtgccgaatgttgtgttctacaatacgcttattgatggatattgtaagagaggtgaggttgaaaatgctaatgggatgtttaaggagttgaaattgaaggggtttctgcctacattgcaaacctatggagctttgattaatgggtattgcaaagtagggaactttgtagcgattgataggcttttgatggaaatgaaggagagaggtttgagggtcaatgtacaggtacataatactatagttgaggctagatgtaagcacgatagctgtgcaacagcggttgatactgtagcaaggatgattgagagtggttgtgagccggatattacaacctataatattttgattaatagttcatgtaagaaagggaaggttgaggaagcggaggagtttctacagcatgcaatgaagaggggattggttccgaatgagtttagttatactcctgtttttcaagtctattgcagacgaggggaacactgtagggccctggatttgcttgttgagatgacaaaaagaggtcacaaacctgatttggttgcctttggagctttgattcatggacatgttgtttctggggaagttgattatgcattgacagtccgggacagaatgatagaaaatggaatactccccgatgcttgcatttacaatgtgttgatgagtggcctttgcaagaaagggaggcttcctactgccaaactgctgcttggtcagatgcttgaccaaaatgtactacctgatgcatttgtctacgccacattggtagatgggttaatcagaaatgggaaccttgaggaggctaaaaatatattcgagttaacaattgaaaagggcctagatcctggtgttgtggggtacaatgctatgatcaagggtttctgcaaatttggaacaatgaatgatgcactgtcattcctcgaaaagatgaagaaaaggaatcatcatcctgatgggtttacttactccacaataattgatgggtatgtcaagcagcataatttggatgctgcactagaaatgtttaaacagatggtgaaacagagatgcaggccaaatgtcattacgtacacctccttgatcaatgggttttgccgcaaaggagattctgatggagctgtaaaaactttcgtagagatgcaatctcgtggtgtggagccaaatatagtcacgtacaccatacttattggaaacttttgcaaggaaggtaaacttgcaaaagcagcctccttttttgaactaatgctgaggaaaaagtgcagtcctaatgatgtcactatccattatttgctaaatgggtttacaaacattgcacctgctgcaatttcaaaggaagtgaatgaatctcaagaaaaggagaaatctatttttcttgatttctataaaaggatgatagccgatggatggtttcagaagtctgctgtctataattccattctcatttgtctttgtcagtatggaatggttgaagctgcattacagtttaacagtaagtttagaagtaaaggtattgatctagattctgtttcttttgcggctgtgctacatggtcttttcttgggaggaagatcaaaggactggaagaatatcatttattttaacttgaaggaaaaagaactccaaactgctgtcaaatactcgcatataatagatgcacagttccatggaggaagaatatctgaagctacacttgctttacggtcattagttgaagatgataagcctcaacatcaagaagtggaagacagagaaagatag

Protein Analysis

823

Amino Acids

92.74

Weight (kDa)

7.86

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2038
Acc36I ACCTGC 1 cut(s) 2038
AccI GTMKAC 1 cut(s) 1467
AccII CGCG 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 7 cut(s) 43, 335, 422, 992, 1097, 1810, 2249
AclWI GGATC 1 cut(s) 1550
AcsI RAATTY 2 cut(s) 155, 1601
AcuI CTGAAG 2 cut(s) 204, 2415
AfaI GTAC 7 cut(s) 628, 936, 942, 1449, 1574, 1784, 1889
AfiI CCNNNNNNNGG 2 cut(s) 1513, 2118
AflIII ACRYGT 1 cut(s) 1279
AjnI CCWGG 3 cut(s) 558, 1203, 1558
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AleI CACNNNNGTG 1 cut(s) 527
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AlwI GGATC 1 cut(s) 1550
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 4 cut(s) 1200, 1381, 1549, 1766
ApaI GGGCCC 1 cut(s) 1204
ApeKI GCWGC 8 cut(s) 270, 352, 1420, 1708, 1724, 1937, 2033, 2186
ApoI RAATTY 2 cut(s) 155, 1601
AseI ATTAAT 2 cut(s) 852, 1062
AspS9I GGNCC 3 cut(s) 1200, 1201, 1549
AsuC2I CCSGG 1 cut(s) 1319
AsuHPI GGTGA 7 cut(s) 63, 481, 605, 611, 652, 779, 1762
BaeGI GKGCMC 1 cut(s) 1204
BanII GRGCYC 1 cut(s) 1204
BarI GAAGNNNNNNTAC 2 cut(s) 2175, 2207
BauI CACGAG 1 cut(s) 1860
BbsI GAAGAC 1 cut(s) 2463
BbvCI CCTCAGC 1 cut(s) 1961
BbvI GCAGC 8 cut(s) 257, 339, 1407, 1711, 1720, 1949, 2020, 2173
BcgI CGANNNNNNTGC 6 cut(s) 249, 283, 492, 526, 965, 999
BciT130I CCWGG 3 cut(s) 560, 1205, 1560
BclI TGATCA 2 cut(s) 1584, 1794
BcnI CCSGG 1 cut(s) 1319
BfaI CTAG 5 cut(s) 92, 963, 1553, 1730, 2231
BfmI CTRYAG 6 cut(s) 353, 622, 951, 1002, 1109, 1195
BfuAI ACCTGC 1 cut(s) 2038
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 4 cut(s) 560, 1205, 1319, 1560
BmgT120I GGNCC 3 cut(s) 1200, 1201, 1549
BmiI GGNNCC 4 cut(s) 1137, 1202, 1505, 1872
BmrFI CCNGG 4 cut(s) 560, 1205, 1319, 1560
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 2463
Bpu10I CCTNAGC 1 cut(s) 1961
BpuEI CTTGAG 2 cut(s) 1529, 2046
BpuMI CCSGG 1 cut(s) 1319
BsaAI YACGTR 2 cut(s) 1782, 1887
BsaJI CCNNGG 2 cut(s) 1203, 2377
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 1513, 2118
Bse1I ACTGG 2 cut(s) 251, 2297
Bse3DI GCAATG 3 cut(s) 827, 1125, 2022
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 3 cut(s) 560, 1205, 1560
BseDI CCNNGG 2 cut(s) 1203, 2377
BseGI GGATG 8 cut(s) 105, 397, 795, 1017, 1660, 1726, 2109, 2123
BseLI CCNNNNNNNGG 2 cut(s) 1513, 2118
BseMI GCAATG 3 cut(s) 827, 1125, 2022
BseMII CTCAG 3 cut(s) 130, 570, 1952
BseNI ACTGG 2 cut(s) 251, 2297
BseRI GAGGAG 3 cut(s) 707, 1115, 1526
BseSI GKGCMC 1 cut(s) 1204
BseXI GCAGC 8 cut(s) 257, 339, 1407, 1711, 1720, 1949, 2020, 2173
BsgI GTGCAG 2 cut(s) 1710, 1993
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 4 cut(s) 1202, 1383, 1551, 1768
BsiSI CCGG 4 cut(s) 109, 256, 1034, 1318
BslFI GGGAC 2 cut(s) 127, 1334
BslI CCNNNNNNNGG 2 cut(s) 1513, 2118
BsmFI GGGAC 2 cut(s) 127, 1334
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 4 cut(s) 1202, 1383, 1551, 1768
Bsp120I GGGCCC 1 cut(s) 1200
Bsp1286I GDGCHC 1 cut(s) 1204
Bsp13I TCCGGA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 934
Bsp143I GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
Bsp19I CCATGG 1 cut(s) 2377
BspACI CCGC 7 cut(s) 43, 335, 422, 992, 1097, 1810, 2249
BspANI GGCC 4 cut(s) 1202, 1383, 1551, 1768
BspCNI CTCAG 3 cut(s) 129, 571, 1953
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 4 cut(s) 1137, 1202, 1505, 1872
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 2038
BspPI GGATC 1 cut(s) 1550
BsrDI GCAATG 3 cut(s) 827, 1125, 2022
BsrGI TGTACA 1 cut(s) 934
BsrI ACTGG 2 cut(s) 251, 2297
BssECI CCNNGG 2 cut(s) 1203, 2377
BssMI GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
BssSI CACGAG 1 cut(s) 1860
BssT1I CCWWGG 1 cut(s) 2377
Bst2BI CACGAG 1 cut(s) 1860
Bst2UI CCWGG 3 cut(s) 560, 1205, 1560
Bst6I CTCTTC 2 cut(s) 18, 1118
BstAPI GCANNNNNTGC 1 cut(s) 2033
BstAUI TGTACA 1 cut(s) 934
BstBAI YACGTR 2 cut(s) 1782, 1887
BstC8I GCNNGC 5 cut(s) 505, 556, 1116, 1357, 1766
BstDEI CTNAG 4 cut(s) 6, 116, 579, 1961
BstDSI CCRYGG 1 cut(s) 2377
BstENI CCTNNNNNAGG 1 cut(s) 1511
BstF5I GGATG 8 cut(s) 105, 397, 795, 1017, 1660, 1726, 2109, 2123
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 5 cut(s) 1558, 1587, 1797, 2230, 2285
BstMBI GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
BstMWI GCNNNNNNNGC 6 cut(s) 523, 829, 1262, 1937, 2033, 2405
BstNI CCWGG 3 cut(s) 560, 1205, 1560
BstNSI RCATGY 4 cut(s) 507, 608, 1118, 1283
BstSCI CCNGG 4 cut(s) 558, 1203, 1317, 1558
BstSFI CTRYAG 6 cut(s) 353, 622, 951, 1002, 1109, 1195
BstSLI GKGCMC 1 cut(s) 1204
BstSNI TACGTA 1 cut(s) 1782
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 8 cut(s) 257, 339, 1407, 1711, 1720, 1949, 2020, 2173
BstV2I GAAGAC 1 cut(s) 2463
BstX2I RGATCY 1 cut(s) 1555
BstYI RGATCY 1 cut(s) 1555
BsuRI GGCC 4 cut(s) 1202, 1383, 1551, 1768
BtgI CCRYGG 1 cut(s) 2377
BtsCI GGATG 8 cut(s) 105, 397, 795, 1017, 1660, 1726, 2109, 2123
BtsIMutI CAGTG 3 cut(s) 299, 1192, 1622
BveI ACCTGC 1 cut(s) 2038
Cac8I GCNNGC 5 cut(s) 505, 556, 1116, 1357, 1766
Cfr13I GGNCC 3 cut(s) 1200, 1201, 1549
Csp6I GTAC 7 cut(s) 627, 935, 941, 1448, 1573, 1783, 1888
CspCI CAANNNNNGTGG 2 cut(s) 1672, 1707
CviQI GTAC 7 cut(s) 627, 935, 941, 1448, 1573, 1783, 1888
DdeI CTNAG 4 cut(s) 6, 116, 579, 1961
DpnI GATC 5 cut(s) 1557, 1586, 1796, 2229, 2284
DpnII GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
DraI TTTAAA 1 cut(s) 1741
Eam1104I CTCTTC 2 cut(s) 18, 1118
EarI CTCTTC 2 cut(s) 18, 1118
Eco105I TACGTA 1 cut(s) 1782
Eco130I CCWWGG 1 cut(s) 2377
Eco24I GRGCYC 1 cut(s) 1204
Eco57I CTGAAG 2 cut(s) 204, 2415
EcoNI CCTNNNNNAGG 1 cut(s) 1511
EcoO109I RGGNCCY 3 cut(s) 1200, 1201, 1549
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 558, 1203, 1558
EcoT14I CCWWGG 1 cut(s) 2377
EcoT22I ATGCAT 2 cut(s) 1309, 1462
EcoT38I GRGCYC 1 cut(s) 1204
ErhI CCWWGG 1 cut(s) 2377
FalI AAGNNNNNCTT 6 cut(s) 1386, 1418, 1911, 1943, 2388, 2420
FaqI GGGAC 2 cut(s) 127, 1334
FbaI TGATCA 2 cut(s) 1584, 1794
FblI GTMKAC 1 cut(s) 1467
FokI GGATG 8 cut(s) 92, 404, 802, 1024, 1647, 1733, 2116, 2130
FriOI GRGCYC 1 cut(s) 1204
FspBI CTAG 5 cut(s) 92, 963, 1553, 1730, 2231
HaeIII GGCC 4 cut(s) 1202, 1383, 1551, 1768
HapII CCGG 4 cut(s) 109, 256, 1034, 1318
HincII GTYRAC 1 cut(s) 1536
HindII GTYRAC 1 cut(s) 1536
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 9 cut(s) 10, 112, 409, 425, 1270, 1654, 1820, 2057, 2234
HpaI GTTAAC 1 cut(s) 1536
HpaII CCGG 4 cut(s) 109, 256, 1034, 1318
HphI GGTGA 7 cut(s) 63, 481, 605, 611, 652, 779, 1762
Hpy166II GTNNAC 8 cut(s) 418, 1468, 1536, 1674, 1785, 1890, 1925, 2016
Hpy188III TCNNGA 8 cut(s) 85, 109, 449, 1664, 2063, 2087, 2231, 2447
Hpy8I GTNNAC 8 cut(s) 418, 1468, 1536, 1674, 1785, 1890, 1925, 2016
Hpy99I CGWCG 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 1781, 1886
HpyF10VI GCNNNNNNNGC 6 cut(s) 523, 829, 1262, 1937, 2033, 2405
HpyF3I CTNAG 4 cut(s) 6, 116, 579, 1961
HpySE526I ACGT 2 cut(s) 1781, 1886
Kpn2I TCCGGA 1 cut(s) 108
Ksp22I TGATCA 2 cut(s) 1584, 1794
KspAI GTTAAC 1 cut(s) 1536
Kzo9I GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
LmnI GCTCC 5 cut(s) 136, 842, 1262, 1829, 1870
Lsp1109I GCAGC 8 cut(s) 257, 339, 1407, 1711, 1720, 1949, 2020, 2173
MaeI CTAG 5 cut(s) 92, 963, 1553, 1730, 2231
MaeII ACGT 2 cut(s) 1781, 1886
MaeIII GTNAC 3 cut(s) 1235, 1882, 1987
MalI GATC 5 cut(s) 1557, 1586, 1796, 2229, 2284
MboI GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
MfeI CAATTG 1 cut(s) 1539
MflI RGATCY 1 cut(s) 1555
MhlI GDGCHC 1 cut(s) 1204
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 348
Mph1103I ATGCAT 2 cut(s) 1309, 1462
MroI TCCGGA 1 cut(s) 108
MseI TTAA 9 cut(s) 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313
MslI CAYNNNNRTG 3 cut(s) 527, 1278, 1665
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 4 cut(s) 109, 256, 1034, 1318
MspR9I CCNGG 4 cut(s) 560, 1205, 1319, 1560
MssI GTTTAAAC 1 cut(s) 1741
MunI CAATTG 1 cut(s) 1539
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 3 cut(s) 560, 1205, 1560
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 6 cut(s) 523, 829, 1262, 1937, 2033, 2405
NciI CCSGG 1 cut(s) 1319
NcoI CCATGG 1 cut(s) 2377
NdeII GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
NlaIV GGNNCC 4 cut(s) 1137, 1202, 1505, 1872
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 3 cut(s) 1235, 1882, 1987
NsiI ATGCAT 2 cut(s) 1309, 1462
NspI RCATGY 4 cut(s) 507, 608, 1118, 1283
OliI CACNNNNGTG 1 cut(s) 527
PaeI GCATGC 2 cut(s) 507, 1118
PaqCI CACCTGC 1 cut(s) 2038
PciI ACATGT 1 cut(s) 1279
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 8 cut(s) 112, 409, 425, 1270, 1654, 1820, 2057, 2234
PfoI TCCNGGA 1 cut(s) 1317
PleI GAGTC 1 cut(s) 4
PmeI GTTTAAAC 1 cut(s) 1741
PpsI GAGTC 1 cut(s) 4
Ppu21I YACGTR 2 cut(s) 1782, 1887
PscI ACATGT 1 cut(s) 1279
PshBI ATTAAT 2 cut(s) 852, 1062
Psp6I CCWGG 3 cut(s) 558, 1203, 1558
PspGI CCWGG 3 cut(s) 558, 1203, 1558
PspN4I GGNNCC 4 cut(s) 1137, 1202, 1505, 1872
PspOMI GGGCCC 1 cut(s) 1200
PspPI GGNCC 3 cut(s) 1200, 1201, 1549
PstI CTGCAG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 1555
RsaI GTAC 7 cut(s) 628, 936, 942, 1449, 1574, 1784, 1889
RsaNI GTAC 7 cut(s) 627, 935, 941, 1448, 1573, 1783, 1888
RseI CAYNNNNRTG 3 cut(s) 527, 1278, 1665
SaqAI TTAA 9 cut(s) 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313
Sau3AI GATC 5 cut(s) 1555, 1584, 1794, 2227, 2282
Sau96I GGNCC 3 cut(s) 1200, 1201, 1549
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 4 cut(s) 560, 1205, 1319, 1560
SduI GDGCHC 1 cut(s) 1204
SfcI CTRYAG 6 cut(s) 353, 622, 951, 1002, 1109, 1195
SmiMI CAYNNNNRTG 3 cut(s) 527, 1278, 1665
SmlI CTYRAG 2 cut(s) 1508, 2061
SmoI CTYRAG 2 cut(s) 1508, 2061
SnaBI TACGTA 1 cut(s) 1782
SphI GCATGC 2 cut(s) 507, 1118
SsiI CCGC 7 cut(s) 43, 335, 422, 992, 1097, 1810, 2249
SspI AATATT 1 cut(s) 1054
SspMI CTAG 5 cut(s) 92, 963, 1553, 1730, 2231
StyD4I CCNGG 4 cut(s) 558, 1203, 1317, 1558
StyI CCWWGG 1 cut(s) 2377
TaiI ACGT 2 cut(s) 1784, 1889
TaqI TCGA 5 cut(s) 147, 412, 438, 1530, 1635
TatI WGTACW 3 cut(s) 626, 934, 1447
TauI GCSGC 3 cut(s) 45, 1812, 2252
TfiI GAWTC 8 cut(s) 112, 409, 425, 1270, 1654, 1820, 2057, 2234
Tru1I TTAA 9 cut(s) 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313
Tru9I TTAA 9 cut(s) 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313
TscAI CASTG 3 cut(s) 306, 1199, 1629
TseFI GTSAC 3 cut(s) 1235, 1882, 1987
TseI GCWGC 8 cut(s) 270, 352, 1420, 1708, 1724, 1937, 2033, 2186
Tsp45I GTSAC 3 cut(s) 1235, 1882, 1987
TspDTI ATGAA 9 cut(s) 377, 585, 923, 1059, 1136, 1262, 1628, 1658, 2070
TspRI CASTG 3 cut(s) 306, 1199, 1629
VspI ATTAAT 2 cut(s) 852, 1062
XagI CCTNNNNNAGG 1 cut(s) 1511
XapI RAATTY 2 cut(s) 155, 1601
XbaI TCTAGA 1 cut(s) 2230
XceI RCATGY 4 cut(s) 507, 608, 1118, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 1467
XspI CTAG 5 cut(s) 92, 963, 1553, 1730, 2231
ZrmI AGTACT 1 cut(s) 628
Zsp2I ATGCAT 2 cut(s) 1309, 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.