Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G52620 |
| fragaria_vesca | FvH4_6g30030 |
| malus_domestica | MD17G1208200.v1.1 |
| prunus_persica | Prupe.3G082900_v2.0.a1 |
| pyrus_communis | pycom17g21100 |
| rosa_chinensis | RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071 |
| rosa_laevigata | RLG00000019500 |
| rosa_multiflora | Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00108610 |
| rosa_rugosa | Rorug02G0327800 |
| rosa_samantha | Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500 |
| rosa_wichuraiana | Rw2G030950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2038 |
| Acc36I | ACCTGC | 1 cut(s) | 2038 |
| AccI | GTMKAC | 1 cut(s) | 1467 |
| AccII | CGCG | 1 cut(s) | 422 |
| AccIII | TCCGGA | 1 cut(s) | 108 |
| AciI | CCGC | 7 cut(s) | 43, 335, 422, 992, 1097, 1810, 2249 |
| AclWI | GGATC | 1 cut(s) | 1550 |
| AcsI | RAATTY | 2 cut(s) | 155, 1601 |
| AcuI | CTGAAG | 2 cut(s) | 204, 2415 |
| AfaI | GTAC | 7 cut(s) | 628, 936, 942, 1449, 1574, 1784, 1889 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1513, 2118 |
| AflIII | ACRYGT | 1 cut(s) | 1279 |
| AjnI | CCWGG | 3 cut(s) | 558, 1203, 1558 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1115, 1147 |
| AleI | CACNNNNGTG | 1 cut(s) | 527 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 416, 448 |
| AlwI | GGATC | 1 cut(s) | 1550 |
| Aor13HI | TCCGGA | 1 cut(s) | 108 |
| AoxI | GGCC | 4 cut(s) | 1200, 1381, 1549, 1766 |
| ApaI | GGGCCC | 1 cut(s) | 1204 |
| ApeKI | GCWGC | 8 cut(s) | 270, 352, 1420, 1708, 1724, 1937, 2033, 2186 |
| ApoI | RAATTY | 2 cut(s) | 155, 1601 |
| AseI | ATTAAT | 2 cut(s) | 852, 1062 |
| AspS9I | GGNCC | 3 cut(s) | 1200, 1201, 1549 |
| AsuC2I | CCSGG | 1 cut(s) | 1319 |
| AsuHPI | GGTGA | 7 cut(s) | 63, 481, 605, 611, 652, 779, 1762 |
| BaeGI | GKGCMC | 1 cut(s) | 1204 |
| BanII | GRGCYC | 1 cut(s) | 1204 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2175, 2207 |
| BauI | CACGAG | 1 cut(s) | 1860 |
| BbsI | GAAGAC | 1 cut(s) | 2463 |
| BbvCI | CCTCAGC | 1 cut(s) | 1961 |
| BbvI | GCAGC | 8 cut(s) | 257, 339, 1407, 1711, 1720, 1949, 2020, 2173 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 249, 283, 492, 526, 965, 999 |
| BciT130I | CCWGG | 3 cut(s) | 560, 1205, 1560 |
| BclI | TGATCA | 2 cut(s) | 1584, 1794 |
| BcnI | CCSGG | 1 cut(s) | 1319 |
| BfaI | CTAG | 5 cut(s) | 92, 963, 1553, 1730, 2231 |
| BfmI | CTRYAG | 6 cut(s) | 353, 622, 951, 1002, 1109, 1195 |
| BfuAI | ACCTGC | 1 cut(s) | 2038 |
| BmcAI | AGTACT | 1 cut(s) | 628 |
| Bme1390I | CCNGG | 4 cut(s) | 560, 1205, 1319, 1560 |
| BmgT120I | GGNCC | 3 cut(s) | 1200, 1201, 1549 |
| BmiI | GGNNCC | 4 cut(s) | 1137, 1202, 1505, 1872 |
| BmrFI | CCNGG | 4 cut(s) | 560, 1205, 1319, 1560 |
| BmrI | ACTGGG | 1 cut(s) | 256 |
| BmuI | ACTGGG | 1 cut(s) | 256 |
| BpiI | GAAGAC | 1 cut(s) | 2463 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1961 |
| BpuEI | CTTGAG | 2 cut(s) | 1529, 2046 |
| BpuMI | CCSGG | 1 cut(s) | 1319 |
| BsaAI | YACGTR | 2 cut(s) | 1782, 1887 |
| BsaJI | CCNNGG | 2 cut(s) | 1203, 2377 |
| BsaWI | WCCGGW | 1 cut(s) | 108 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 329, 359 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1513, 2118 |
| Bse1I | ACTGG | 2 cut(s) | 251, 2297 |
| Bse3DI | GCAATG | 3 cut(s) | 827, 1125, 2022 |
| BseAI | TCCGGA | 1 cut(s) | 108 |
| BseBI | CCWGG | 3 cut(s) | 560, 1205, 1560 |
| BseDI | CCNNGG | 2 cut(s) | 1203, 2377 |
| BseGI | GGATG | 8 cut(s) | 105, 397, 795, 1017, 1660, 1726, 2109, 2123 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1513, 2118 |
| BseMI | GCAATG | 3 cut(s) | 827, 1125, 2022 |
| BseMII | CTCAG | 3 cut(s) | 130, 570, 1952 |
| BseNI | ACTGG | 2 cut(s) | 251, 2297 |
| BseRI | GAGGAG | 3 cut(s) | 707, 1115, 1526 |
| BseSI | GKGCMC | 1 cut(s) | 1204 |
| BseXI | GCAGC | 8 cut(s) | 257, 339, 1407, 1711, 1720, 1949, 2020, 2173 |
| BsgI | GTGCAG | 2 cut(s) | 1710, 1993 |
| Bsh1236I | CGCG | 1 cut(s) | 422 |
| BshFI | GGCC | 4 cut(s) | 1202, 1383, 1551, 1768 |
| BsiSI | CCGG | 4 cut(s) | 109, 256, 1034, 1318 |
| BslFI | GGGAC | 2 cut(s) | 127, 1334 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1513, 2118 |
| BsmFI | GGGAC | 2 cut(s) | 127, 1334 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| BsnI | GGCC | 4 cut(s) | 1202, 1383, 1551, 1768 |
| Bsp120I | GGGCCC | 1 cut(s) | 1200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1204 |
| Bsp13I | TCCGGA | 1 cut(s) | 108 |
| Bsp1407I | TGTACA | 1 cut(s) | 934 |
| Bsp143I | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| Bsp19I | CCATGG | 1 cut(s) | 2377 |
| BspACI | CCGC | 7 cut(s) | 43, 335, 422, 992, 1097, 1810, 2249 |
| BspANI | GGCC | 4 cut(s) | 1202, 1383, 1551, 1768 |
| BspCNI | CTCAG | 3 cut(s) | 129, 571, 1953 |
| BspEI | TCCGGA | 1 cut(s) | 108 |
| BspFNI | CGCG | 1 cut(s) | 422 |
| BspLI | GGNNCC | 4 cut(s) | 1137, 1202, 1505, 1872 |
| BspMAI | CTGCAG | 1 cut(s) | 357 |
| BspMI | ACCTGC | 1 cut(s) | 2038 |
| BspPI | GGATC | 1 cut(s) | 1550 |
| BsrDI | GCAATG | 3 cut(s) | 827, 1125, 2022 |
| BsrGI | TGTACA | 1 cut(s) | 934 |
| BsrI | ACTGG | 2 cut(s) | 251, 2297 |
| BssECI | CCNNGG | 2 cut(s) | 1203, 2377 |
| BssMI | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| BssSI | CACGAG | 1 cut(s) | 1860 |
| BssT1I | CCWWGG | 1 cut(s) | 2377 |
| Bst2BI | CACGAG | 1 cut(s) | 1860 |
| Bst2UI | CCWGG | 3 cut(s) | 560, 1205, 1560 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 1118 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2033 |
| BstAUI | TGTACA | 1 cut(s) | 934 |
| BstBAI | YACGTR | 2 cut(s) | 1782, 1887 |
| BstC8I | GCNNGC | 5 cut(s) | 505, 556, 1116, 1357, 1766 |
| BstDEI | CTNAG | 4 cut(s) | 6, 116, 579, 1961 |
| BstDSI | CCRYGG | 1 cut(s) | 2377 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1511 |
| BstF5I | GGATG | 8 cut(s) | 105, 397, 795, 1017, 1660, 1726, 2109, 2123 |
| BstFNI | CGCG | 1 cut(s) | 422 |
| BstKTI | GATC | 5 cut(s) | 1558, 1587, 1797, 2230, 2285 |
| BstMBI | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 523, 829, 1262, 1937, 2033, 2405 |
| BstNI | CCWGG | 3 cut(s) | 560, 1205, 1560 |
| BstNSI | RCATGY | 4 cut(s) | 507, 608, 1118, 1283 |
| BstSCI | CCNGG | 4 cut(s) | 558, 1203, 1317, 1558 |
| BstSFI | CTRYAG | 6 cut(s) | 353, 622, 951, 1002, 1109, 1195 |
| BstSLI | GKGCMC | 1 cut(s) | 1204 |
| BstSNI | TACGTA | 1 cut(s) | 1782 |
| BstUI | CGCG | 1 cut(s) | 422 |
| BstV1I | GCAGC | 8 cut(s) | 257, 339, 1407, 1711, 1720, 1949, 2020, 2173 |
| BstV2I | GAAGAC | 1 cut(s) | 2463 |
| BstX2I | RGATCY | 1 cut(s) | 1555 |
| BstYI | RGATCY | 1 cut(s) | 1555 |
| BsuRI | GGCC | 4 cut(s) | 1202, 1383, 1551, 1768 |
| BtgI | CCRYGG | 1 cut(s) | 2377 |
| BtsCI | GGATG | 8 cut(s) | 105, 397, 795, 1017, 1660, 1726, 2109, 2123 |
| BtsIMutI | CAGTG | 3 cut(s) | 299, 1192, 1622 |
| BveI | ACCTGC | 1 cut(s) | 2038 |
| Cac8I | GCNNGC | 5 cut(s) | 505, 556, 1116, 1357, 1766 |
| Cfr13I | GGNCC | 3 cut(s) | 1200, 1201, 1549 |
| Csp6I | GTAC | 7 cut(s) | 627, 935, 941, 1448, 1573, 1783, 1888 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1672, 1707 |
| CviQI | GTAC | 7 cut(s) | 627, 935, 941, 1448, 1573, 1783, 1888 |
| DdeI | CTNAG | 4 cut(s) | 6, 116, 579, 1961 |
| DpnI | GATC | 5 cut(s) | 1557, 1586, 1796, 2229, 2284 |
| DpnII | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| DraI | TTTAAA | 1 cut(s) | 1741 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 1118 |
| EarI | CTCTTC | 2 cut(s) | 18, 1118 |
| Eco105I | TACGTA | 1 cut(s) | 1782 |
| Eco130I | CCWWGG | 1 cut(s) | 2377 |
| Eco24I | GRGCYC | 1 cut(s) | 1204 |
| Eco57I | CTGAAG | 2 cut(s) | 204, 2415 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1511 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1200, 1201, 1549 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 3 cut(s) | 558, 1203, 1558 |
| EcoT14I | CCWWGG | 1 cut(s) | 2377 |
| EcoT22I | ATGCAT | 2 cut(s) | 1309, 1462 |
| EcoT38I | GRGCYC | 1 cut(s) | 1204 |
| ErhI | CCWWGG | 1 cut(s) | 2377 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1386, 1418, 1911, 1943, 2388, 2420 |
| FaqI | GGGAC | 2 cut(s) | 127, 1334 |
| FbaI | TGATCA | 2 cut(s) | 1584, 1794 |
| FblI | GTMKAC | 1 cut(s) | 1467 |
| FokI | GGATG | 8 cut(s) | 92, 404, 802, 1024, 1647, 1733, 2116, 2130 |
| FriOI | GRGCYC | 1 cut(s) | 1204 |
| FspBI | CTAG | 5 cut(s) | 92, 963, 1553, 1730, 2231 |
| HaeIII | GGCC | 4 cut(s) | 1202, 1383, 1551, 1768 |
| HapII | CCGG | 4 cut(s) | 109, 256, 1034, 1318 |
| HincII | GTYRAC | 1 cut(s) | 1536 |
| HindII | GTYRAC | 1 cut(s) | 1536 |
| HindIII | AAGCTT | 1 cut(s) | 308 |
| HinfI | GANTC | 9 cut(s) | 10, 112, 409, 425, 1270, 1654, 1820, 2057, 2234 |
| HpaI | GTTAAC | 1 cut(s) | 1536 |
| HpaII | CCGG | 4 cut(s) | 109, 256, 1034, 1318 |
| HphI | GGTGA | 7 cut(s) | 63, 481, 605, 611, 652, 779, 1762 |
| Hpy166II | GTNNAC | 8 cut(s) | 418, 1468, 1536, 1674, 1785, 1890, 1925, 2016 |
| Hpy188III | TCNNGA | 8 cut(s) | 85, 109, 449, 1664, 2063, 2087, 2231, 2447 |
| Hpy8I | GTNNAC | 8 cut(s) | 418, 1468, 1536, 1674, 1785, 1890, 1925, 2016 |
| Hpy99I | CGWCG | 1 cut(s) | 440 |
| HpyCH4IV | ACGT | 2 cut(s) | 1781, 1886 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 523, 829, 1262, 1937, 2033, 2405 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 116, 579, 1961 |
| HpySE526I | ACGT | 2 cut(s) | 1781, 1886 |
| Kpn2I | TCCGGA | 1 cut(s) | 108 |
| Ksp22I | TGATCA | 2 cut(s) | 1584, 1794 |
| KspAI | GTTAAC | 1 cut(s) | 1536 |
| Kzo9I | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| LmnI | GCTCC | 5 cut(s) | 136, 842, 1262, 1829, 1870 |
| Lsp1109I | GCAGC | 8 cut(s) | 257, 339, 1407, 1711, 1720, 1949, 2020, 2173 |
| MaeI | CTAG | 5 cut(s) | 92, 963, 1553, 1730, 2231 |
| MaeII | ACGT | 2 cut(s) | 1781, 1886 |
| MaeIII | GTNAC | 3 cut(s) | 1235, 1882, 1987 |
| MalI | GATC | 5 cut(s) | 1557, 1586, 1796, 2229, 2284 |
| MboI | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| MfeI | CAATTG | 1 cut(s) | 1539 |
| MflI | RGATCY | 1 cut(s) | 1555 |
| MhlI | GDGCHC | 1 cut(s) | 1204 |
| MlyI | GAGTC | 1 cut(s) | 4 |
| MmeI | TCCRAC | 1 cut(s) | 348 |
| Mph1103I | ATGCAT | 2 cut(s) | 1309, 1462 |
| MroI | TCCGGA | 1 cut(s) | 108 |
| MseI | TTAA | 9 cut(s) | 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313 |
| MslI | CAYNNNNRTG | 3 cut(s) | 527, 1278, 1665 |
| MspA1I | CMGCKG | 1 cut(s) | 992 |
| MspI | CCGG | 4 cut(s) | 109, 256, 1034, 1318 |
| MspR9I | CCNGG | 4 cut(s) | 560, 1205, 1319, 1560 |
| MssI | GTTTAAAC | 1 cut(s) | 1741 |
| MunI | CAATTG | 1 cut(s) | 1539 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| MvaI | CCWGG | 3 cut(s) | 560, 1205, 1560 |
| MvnI | CGCG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 523, 829, 1262, 1937, 2033, 2405 |
| NciI | CCSGG | 1 cut(s) | 1319 |
| NcoI | CCATGG | 1 cut(s) | 2377 |
| NdeII | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| NlaIV | GGNNCC | 4 cut(s) | 1137, 1202, 1505, 1872 |
| NmeAIII | GCCGAG | 1 cut(s) | 408 |
| NmuCI | GTSAC | 3 cut(s) | 1235, 1882, 1987 |
| NsiI | ATGCAT | 2 cut(s) | 1309, 1462 |
| NspI | RCATGY | 4 cut(s) | 507, 608, 1118, 1283 |
| OliI | CACNNNNGTG | 1 cut(s) | 527 |
| PaeI | GCATGC | 2 cut(s) | 507, 1118 |
| PaqCI | CACCTGC | 1 cut(s) | 2038 |
| PciI | ACATGT | 1 cut(s) | 1279 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PfeI | GAWTC | 8 cut(s) | 112, 409, 425, 1270, 1654, 1820, 2057, 2234 |
| PfoI | TCCNGGA | 1 cut(s) | 1317 |
| PleI | GAGTC | 1 cut(s) | 4 |
| PmeI | GTTTAAAC | 1 cut(s) | 1741 |
| PpsI | GAGTC | 1 cut(s) | 4 |
| Ppu21I | YACGTR | 2 cut(s) | 1782, 1887 |
| PscI | ACATGT | 1 cut(s) | 1279 |
| PshBI | ATTAAT | 2 cut(s) | 852, 1062 |
| Psp6I | CCWGG | 3 cut(s) | 558, 1203, 1558 |
| PspGI | CCWGG | 3 cut(s) | 558, 1203, 1558 |
| PspN4I | GGNNCC | 4 cut(s) | 1137, 1202, 1505, 1872 |
| PspOMI | GGGCCC | 1 cut(s) | 1200 |
| PspPI | GGNCC | 3 cut(s) | 1200, 1201, 1549 |
| PstI | CTGCAG | 1 cut(s) | 357 |
| PsuI | RGATCY | 1 cut(s) | 1555 |
| RsaI | GTAC | 7 cut(s) | 628, 936, 942, 1449, 1574, 1784, 1889 |
| RsaNI | GTAC | 7 cut(s) | 627, 935, 941, 1448, 1573, 1783, 1888 |
| RseI | CAYNNNNRTG | 3 cut(s) | 527, 1278, 1665 |
| SaqAI | TTAA | 9 cut(s) | 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313 |
| Sau3AI | GATC | 5 cut(s) | 1555, 1584, 1794, 2227, 2282 |
| Sau96I | GGNCC | 3 cut(s) | 1200, 1201, 1549 |
| ScaI | AGTACT | 1 cut(s) | 628 |
| SchI | GAGTC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 4 cut(s) | 560, 1205, 1319, 1560 |
| SduI | GDGCHC | 1 cut(s) | 1204 |
| SfcI | CTRYAG | 6 cut(s) | 353, 622, 951, 1002, 1109, 1195 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 527, 1278, 1665 |
| SmlI | CTYRAG | 2 cut(s) | 1508, 2061 |
| SmoI | CTYRAG | 2 cut(s) | 1508, 2061 |
| SnaBI | TACGTA | 1 cut(s) | 1782 |
| SphI | GCATGC | 2 cut(s) | 507, 1118 |
| SsiI | CCGC | 7 cut(s) | 43, 335, 422, 992, 1097, 1810, 2249 |
| SspI | AATATT | 1 cut(s) | 1054 |
| SspMI | CTAG | 5 cut(s) | 92, 963, 1553, 1730, 2231 |
| StyD4I | CCNGG | 4 cut(s) | 558, 1203, 1317, 1558 |
| StyI | CCWWGG | 1 cut(s) | 2377 |
| TaiI | ACGT | 2 cut(s) | 1784, 1889 |
| TaqI | TCGA | 5 cut(s) | 147, 412, 438, 1530, 1635 |
| TatI | WGTACW | 3 cut(s) | 626, 934, 1447 |
| TauI | GCSGC | 3 cut(s) | 45, 1812, 2252 |
| TfiI | GAWTC | 8 cut(s) | 112, 409, 425, 1270, 1654, 1820, 2057, 2234 |
| Tru1I | TTAA | 9 cut(s) | 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313 |
| Tru9I | TTAA | 9 cut(s) | 519, 795, 852, 1062, 1490, 1535, 1740, 2199, 2313 |
| TscAI | CASTG | 3 cut(s) | 306, 1199, 1629 |
| TseFI | GTSAC | 3 cut(s) | 1235, 1882, 1987 |
| TseI | GCWGC | 8 cut(s) | 270, 352, 1420, 1708, 1724, 1937, 2033, 2186 |
| Tsp45I | GTSAC | 3 cut(s) | 1235, 1882, 1987 |
| TspDTI | ATGAA | 9 cut(s) | 377, 585, 923, 1059, 1136, 1262, 1628, 1658, 2070 |
| TspRI | CASTG | 3 cut(s) | 306, 1199, 1629 |
| VspI | ATTAAT | 2 cut(s) | 852, 1062 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1511 |
| XapI | RAATTY | 2 cut(s) | 155, 1601 |
| XbaI | TCTAGA | 1 cut(s) | 2230 |
| XceI | RCATGY | 4 cut(s) | 507, 608, 1118, 1283 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XmiI | GTMKAC | 1 cut(s) | 1467 |
| XspI | CTAG | 5 cut(s) | 92, 963, 1553, 1730, 2231 |
| ZrmI | AGTACT | 1 cut(s) | 628 |
| Zsp2I | ATGCAT | 2 cut(s) | 1309, 1462 |