Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Forward (+)

49614358 .. 49614753

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG365700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGCTAGACAAGTTCGAGATTGAGGAGGCAGTGACCCCGGAATTGCAGACAATTAAGCAAATGGTGGAAGATGGTTGCGCTGAGAATGCAATTTCTTTGCTGATCTTGGCCAGTAGCATTCTAGGCAAGGTTCTCAAGTACTGCAAGAAGCACATAGATGACAAGGAGGCAAACTATCTTAGCAATGCTGGGCTGCTGGATTTGACATGTCAGACTGTGGCGAACATGATCAAGGGAATGATTCCTAGAGAGATTCACAAGGCTTTCAACATCAAGAATAACTTCACTCCTGAGGGAAGAAGAGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

5.67

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	5 - 52	2.2e-13	Skp1 family, tetramerisation domain
Skp1	PF01466	65 - 99	7.3e-16	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	196
Asp700I	GAANNNNTTC	2 cut(s)	284, 307
AspLEI	GCGC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	3 cut(s)	8, 125, 249
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	75, 285
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	94, 120
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	105, 231
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	76, 286
BspLI	GGNNCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	105, 231
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	84, 182, 294
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	108, 234
BstMBI	GATC	2 cut(s)	105, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 126
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	210, 229
CviJI	RGCY	4 cut(s)	7, 113, 196, 266
CviKI_1	RGCY	4 cut(s)	7, 113, 196, 266
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	84, 182, 294
DpnI	GATC	2 cut(s)	107, 233
DpnII	GATC	2 cut(s)	105, 231
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	213, 232
FaiI	YATR	3 cut(s)	158, 211, 230
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	2 cut(s)	209, 228
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	3 cut(s)	8, 125, 249
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	213, 232
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	244, 256
HpaII	CCGG	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	19, 277, 293
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	49, 92, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 126
HpyF3I	CTNAG	3 cut(s)	84, 182, 294
Hsp92II	CATG	2 cut(s)	213, 232
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	105, 231
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	54, 127, 177, 185, 306
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	8, 125, 249
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	107, 233
MboI	GATC	2 cut(s)	105, 231
MboII	GAAGA	3 cut(s)	83, 312, 315
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	3 cut(s)	44, 54, 93
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	5 cut(s)	19, 22, 163, 289, 299
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	284, 307
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	2 cut(s)	94, 120
MwoI	GCNNNNNNNGC	2 cut(s)	89, 126
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	105, 231
NlaIII	CATG	2 cut(s)	213, 232
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	213
PciI	ACATGT	1 cut(s)	209
PctI	GAATGC	2 cut(s)	94, 120
PdmI	GAANNNNTTC	2 cut(s)	284, 307
PfeI	GAWTC	2 cut(s)	244, 256
PkrI	GCNGC	1 cut(s)	198
PscI	ACATGT	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	105, 231
ScaI	AGTACT	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	3 cut(s)	9, 135, 310
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	44, 54, 93
SspMI	CTAG	3 cut(s)	8, 125, 249
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	44, 54, 93
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	244, 256
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	34
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	213
XmnI	GAANNNNTTC	2 cut(s)	284, 307
XspI	CTAG	3 cut(s)	8, 125, 249
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.