Rmu_sc0002070.1_g000001

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002070.1
Physical Location & Seq
Forward (+)
92 .. 2353
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002070.1_g000001.1.cds

Sequence Viewer

Length: 2262 bp
atgcccaatgcagagttgggtttgaagttctttgactgggctttccggcgaccctattgctgctctccaaatgggttggcgtattcttcactgttgaagcttttggcgaggtttggagtggttgcggagattgagttggtgctgcagagcatgaagttggaacaagtagagccgagtaaggatgctttgagctttgtgattcgagtttacgcggattctgggttcgtcgataaggctcttgaattgtatagttttggggtgaagctgtgtggttttgttccgagtgttttcgcatgcaattcgttgcttaacacgcttgtgaagattgggagagttgatgtcgcacgccaggtgtatgatgaaatgtctgagaaaggtggtggtgatggtgagcatgtgtgtatagataactacagtacttgtatcatggtgagggggttgtgtaaggaagggaaggttgaagaagggagaaggttgattgaggagaggtggggagagaattgtgtgccgaatgttgtgttctacaatacgcttattgatggatattgtaagagaggtgaggttgaaaatgctaatgggatgtttaaggagttgaaattgaaggggtttctgcctacattgcaaacctatggagctttgattaatgggtattgcaaagtagggaactttgtagcgattgataggcttttgatggaaatgaaggagagaggtttgagggtcaatgtacaggtacataatactatagttgaggctagatgtaagcacgatagctgtgcaaccgcggttgatactgtagcaaggatgattgagagtggttgtgagccggatattacaacctataatattttgattaatagttcatgtaagaaagggaaggttgaggaagcggaggagtttctacagcatgcaatgaagaggggattggttccgaatgagtttagttatactcctgtttttcaagtctattgcagacgaggggaacactgtagggccctggatttgcttgttgagatgacaaaaagaggtcacaaacctgatttggttgcctttggagctttgattcatggacatgttgtttctggggaagttgattatgcattgacagtccgggacagaatgatagaaaatggaatactccccgatgcttgcatttacaatgtgttgatgagtggcctttgcaagaaagggaggcttcctactgccaaactgctgcttggtcagatgcttgaccaaaatgtactacctgatgcatttgtctacgccacattggtagatgggttaatcagaaatgggaaccttgaggaggctaaaaatatattcgagttaacaattgaaaagggcctagatcctggtgttgtggggtacaatgctatgatcaagggtttctgcaaatttggaacaatgaatgatgcactgtcattcctcgaaaagatgaagaaaaggaatcatcatcctgatgggtttacttactccacaataattgatgggtatgtcaagcagcataatttggatgctgcactagaaatgtttaaacagatggtgaaacagagatgcaggccaaatgtcattacgtacacctccttgatcaatgggttttgccgcaaaggagattctgatggagctgtaaaaactttcgtagagatgcaatctcgtggtgtggagccaaatatagtcacgtacaccatacttattggaaacttttgcaaggaaggtaaacttgcaaaagcagcctccttttttgaactaatgctgaggaaaaagtgcagtcctaatgatgtcactatccattatttgctaaatgggtttacaaacattgcacctgctgcaatttcaaaggaagtgaatgaatctcaagaaaaggagaaatctatttttcttgatttctataaaaggatgatagccgatggatggtttcagaagtctgctgtctataattccattctcatttgtctttgtcagtatggaatggttgaagctgcattacagtttaacagtaagtttagaagtaaaggtattgatctagattctgtttcttttgcggctgtgctacatggtcttttcttgggaggaagatcaaaggactggaagaatatcatttattttaacttgaaggaaaaagaactccaaactgctgtcaaatactcgcatataatagatgcacagttccatggaggaagaatatctgaagctacacttgctttacggtcattagttgaagatgataagcctcaacatcaagaagtggaagacagagaaagatag

Protein Analysis

753

Amino Acids

84.57

Weight (kDa)

7.68

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1828
Acc36I ACCTGC 1 cut(s) 1828
AccI GTMKAC 1 cut(s) 1257
AccII CGCG 2 cut(s) 212, 782
AciI CCGC 7 cut(s) 125, 212, 780, 782, 887, 1600, 2039
AclWI GGATC 1 cut(s) 1340
AcsI RAATTY 1 cut(s) 1391
AcuI CTGAAG 1 cut(s) 2205
AfaI GTAC 7 cut(s) 418, 726, 732, 1239, 1364, 1574, 1679
AfiI CCNNNNNNNGG 2 cut(s) 1303, 1908
AflIII ACRYGT 1 cut(s) 1069
AjnI CCWGG 3 cut(s) 348, 993, 1348
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AleI CACNNNNGTG 1 cut(s) 317
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 9 cut(s) 100, 192, 265, 635, 771, 1055, 1622, 1976, 2189
AluI AGCT 9 cut(s) 100, 192, 265, 635, 771, 1055, 1622, 1976, 2189
AlwI GGATC 1 cut(s) 1340
AoxI GGCC 4 cut(s) 990, 1171, 1339, 1556
ApaI GGGCCC 1 cut(s) 994
ApeKI GCWGC 8 cut(s) 60, 142, 1210, 1498, 1514, 1727, 1823, 1976
ApoI RAATTY 1 cut(s) 1391
AseI ATTAAT 2 cut(s) 642, 852
AspS9I GGNCC 3 cut(s) 990, 991, 1339
AsuC2I CCSGG 1 cut(s) 1109
AsuHPI GGTGA 6 cut(s) 271, 395, 401, 442, 569, 1552
BaeGI GKGCMC 1 cut(s) 994
BanII GRGCYC 1 cut(s) 994
BarI GAAGNNNNNNTAC 2 cut(s) 1965, 1997
BauI CACGAG 1 cut(s) 1650
BbsI GAAGAC 1 cut(s) 2253
BbvCI CCTCAGC 1 cut(s) 1751
BbvI GCAGC 8 cut(s) 47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BcgI CGANNNNNNTGC 6 cut(s) 39, 73, 282, 316, 755, 789
BciT130I CCWGG 3 cut(s) 350, 995, 1350
BclI TGATCA 2 cut(s) 1374, 1584
BcnI CCSGG 1 cut(s) 1109
BfaI CTAG 4 cut(s) 753, 1343, 1520, 2021
BfmI CTRYAG 6 cut(s) 143, 412, 741, 792, 899, 985
BfuAI ACCTGC 1 cut(s) 1828
BmcAI AGTACT 1 cut(s) 418
Bme1390I CCNGG 4 cut(s) 350, 995, 1109, 1350
BmgT120I GGNCC 3 cut(s) 990, 991, 1339
BmiI GGNNCC 4 cut(s) 927, 992, 1295, 1662
BmrFI CCNGG 4 cut(s) 350, 995, 1109, 1350
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 9 cut(s) 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 2253
Bpu10I CCTNAGC 1 cut(s) 1751
BpuEI CTTGAG 2 cut(s) 1319, 1836
BpuMI CCSGG 1 cut(s) 1109
BsaAI YACGTR 2 cut(s) 1572, 1677
BsaJI CCNNGG 3 cut(s) 780, 993, 2167
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 1303, 1908
Bse1I ACTGG 2 cut(s) 41, 2087
Bse3DI GCAATG 3 cut(s) 617, 915, 1812
BseBI CCWGG 3 cut(s) 350, 995, 1350
BseDI CCNNGG 3 cut(s) 780, 993, 2167
BseGI GGATG 7 cut(s) 187, 585, 807, 1450, 1516, 1899, 1913
BseLI CCNNNNNNNGG 2 cut(s) 1303, 1908
BseMI GCAATG 3 cut(s) 617, 915, 1812
BseMII CTCAG 2 cut(s) 360, 1742
BseNI ACTGG 2 cut(s) 41, 2087
BseRI GAGGAG 3 cut(s) 497, 905, 1316
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 8 cut(s) 47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BsgI GTGCAG 2 cut(s) 1500, 1783
Bsh1236I CGCG 2 cut(s) 212, 782
BshFI GGCC 4 cut(s) 992, 1173, 1341, 1558
BsiSI CCGG 3 cut(s) 46, 824, 1108
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 2 cut(s) 1303, 1908
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 4 cut(s) 992, 1173, 1341, 1558
Bsp120I GGGCCC 1 cut(s) 990
Bsp1286I GDGCHC 1 cut(s) 994
Bsp1407I TGTACA 1 cut(s) 724
Bsp143I GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
Bsp19I CCATGG 1 cut(s) 2167
BspACI CCGC 7 cut(s) 125, 212, 780, 782, 887, 1600, 2039
BspANI GGCC 4 cut(s) 992, 1173, 1341, 1558
BspCNI CTCAG 2 cut(s) 361, 1743
BspFNI CGCG 2 cut(s) 212, 782
BspLI GGNNCC 4 cut(s) 927, 992, 1295, 1662
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 1828
BspPI GGATC 1 cut(s) 1340
BsrDI GCAATG 3 cut(s) 617, 915, 1812
BsrGI TGTACA 1 cut(s) 724
BsrI ACTGG 2 cut(s) 41, 2087
BssECI CCNNGG 3 cut(s) 780, 993, 2167
BssMI GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
BssSI CACGAG 1 cut(s) 1650
BssT1I CCWWGG 1 cut(s) 2167
Bst2BI CACGAG 1 cut(s) 1650
Bst2UI CCWGG 3 cut(s) 350, 995, 1350
Bst6I CTCTTC 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 1823
BstAUI TGTACA 1 cut(s) 724
BstBAI YACGTR 2 cut(s) 1572, 1677
BstC8I GCNNGC 5 cut(s) 295, 346, 906, 1147, 1556
BstDEI CTNAG 2 cut(s) 369, 1751
BstDSI CCRYGG 2 cut(s) 780, 2167
BstENI CCTNNNNNAGG 1 cut(s) 1301
BstF5I GGATG 7 cut(s) 187, 585, 807, 1450, 1516, 1899, 1913
BstFNI CGCG 2 cut(s) 212, 782
BstKTI GATC 5 cut(s) 1348, 1377, 1587, 2020, 2075
BstMBI GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
BstMWI GCNNNNNNNGC 6 cut(s) 313, 619, 1052, 1727, 1823, 2195
BstNI CCWGG 3 cut(s) 350, 995, 1350
BstNSI RCATGY 4 cut(s) 297, 398, 908, 1073
BstSCI CCNGG 4 cut(s) 348, 993, 1107, 1348
BstSFI CTRYAG 6 cut(s) 143, 412, 741, 792, 899, 985
BstSLI GKGCMC 1 cut(s) 994
BstSNI TACGTA 1 cut(s) 1572
BstUI CGCG 2 cut(s) 212, 782
BstV1I GCAGC 8 cut(s) 47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BstV2I GAAGAC 1 cut(s) 2253
BstX2I RGATCY 1 cut(s) 1345
BstYI RGATCY 1 cut(s) 1345
BsuRI GGCC 4 cut(s) 992, 1173, 1341, 1558
BtgI CCRYGG 2 cut(s) 780, 2167
BtsCI GGATG 7 cut(s) 187, 585, 807, 1450, 1516, 1899, 1913
BtsIMutI CAGTG 3 cut(s) 89, 982, 1412
BveI ACCTGC 1 cut(s) 1828
Cac8I GCNNGC 5 cut(s) 295, 346, 906, 1147, 1556
Cfr13I GGNCC 3 cut(s) 990, 991, 1339
Cfr42I CCGCGG 1 cut(s) 783
Csp6I GTAC 7 cut(s) 417, 725, 731, 1238, 1363, 1573, 1678
CspCI CAANNNNNGTGG 2 cut(s) 1462, 1497
CviQI GTAC 7 cut(s) 417, 725, 731, 1238, 1363, 1573, 1678
DdeI CTNAG 2 cut(s) 369, 1751
DpnI GATC 5 cut(s) 1347, 1376, 1586, 2019, 2074
DpnII GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
DraI TTTAAA 1 cut(s) 1531
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
Eco105I TACGTA 1 cut(s) 1572
Eco130I CCWWGG 1 cut(s) 2167
Eco24I GRGCYC 1 cut(s) 994
Eco57I CTGAAG 1 cut(s) 2205
EcoNI CCTNNNNNAGG 1 cut(s) 1301
EcoO109I RGGNCCY 3 cut(s) 990, 991, 1339
EcoRII CCWGG 3 cut(s) 348, 993, 1348
EcoT14I CCWWGG 1 cut(s) 2167
EcoT22I ATGCAT 2 cut(s) 1099, 1252
EcoT38I GRGCYC 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 2167
FalI AAGNNNNNCTT 6 cut(s) 1176, 1208, 1701, 1733, 2178, 2210
FaqI GGGAC 1 cut(s) 1124
FbaI TGATCA 2 cut(s) 1374, 1584
FblI GTMKAC 1 cut(s) 1257
FokI GGATG 7 cut(s) 194, 592, 814, 1437, 1523, 1906, 1920
FriOI GRGCYC 1 cut(s) 994
FspBI CTAG 4 cut(s) 753, 1343, 1520, 2021
HaeIII GGCC 4 cut(s) 992, 1173, 1341, 1558
HapII CCGG 3 cut(s) 46, 824, 1108
HincII GTYRAC 1 cut(s) 1326
HindII GTYRAC 1 cut(s) 1326
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 7 cut(s) 199, 215, 1060, 1444, 1610, 1847, 2024
HpaI GTTAAC 1 cut(s) 1326
HpaII CCGG 3 cut(s) 46, 824, 1108
HphI GGTGA 6 cut(s) 271, 395, 401, 442, 569, 1552
Hpy166II GTNNAC 8 cut(s) 208, 1258, 1326, 1464, 1575, 1680, 1715, 1806
Hpy188I TCNGA 8 cut(s) 282, 370, 930, 1221, 1286, 1615, 1917, 2185
Hpy188III TCNNGA 6 cut(s) 239, 1454, 1853, 1877, 2021, 2237
Hpy8I GTNNAC 8 cut(s) 208, 1258, 1326, 1464, 1575, 1680, 1715, 1806
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 9 cut(s) 443, 448, 458, 465, 595, 694, 868, 1703, 2104
HpyCH4IV ACGT 2 cut(s) 1571, 1676
HpyF10VI GCNNNNNNNGC 6 cut(s) 313, 619, 1052, 1727, 1823, 2195
HpyF3I CTNAG 2 cut(s) 369, 1751
HpySE526I ACGT 2 cut(s) 1571, 1676
Ksp22I TGATCA 2 cut(s) 1374, 1584
KspAI GTTAAC 1 cut(s) 1326
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
LmnI GCTCC 4 cut(s) 632, 1052, 1619, 1660
Lsp1109I GCAGC 8 cut(s) 47, 129, 1197, 1501, 1510, 1739, 1810, 1963
LweI GCATC 9 cut(s) 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
MaeI CTAG 4 cut(s) 753, 1343, 1520, 2021
MaeII ACGT 2 cut(s) 1571, 1676
MaeIII GTNAC 3 cut(s) 1025, 1672, 1777
MalI GATC 5 cut(s) 1347, 1376, 1586, 2019, 2074
MboI GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
MfeI CAATTG 1 cut(s) 1329
MflI RGATCY 1 cut(s) 1345
MhlI GDGCHC 1 cut(s) 994
MmeI TCCRAC 1 cut(s) 138
Mph1103I ATGCAT 2 cut(s) 1099, 1252
MseI TTAA 9 cut(s) 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
MslI CAYNNNNRTG 3 cut(s) 317, 1068, 1455
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 3 cut(s) 46, 824, 1108
MspR9I CCNGG 4 cut(s) 350, 995, 1109, 1350
MssI GTTTAAAC 1 cut(s) 1531
MunI CAATTG 1 cut(s) 1329
MvaI CCWGG 3 cut(s) 350, 995, 1350
MvnI CGCG 2 cut(s) 212, 782
MwoI GCNNNNNNNGC 6 cut(s) 313, 619, 1052, 1727, 1823, 2195
NciI CCSGG 1 cut(s) 1109
NcoI CCATGG 1 cut(s) 2167
NdeII GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
NlaIV GGNNCC 4 cut(s) 927, 992, 1295, 1662
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 3 cut(s) 1025, 1672, 1777
NsiI ATGCAT 2 cut(s) 1099, 1252
NspI RCATGY 4 cut(s) 297, 398, 908, 1073
OliI CACNNNNGTG 1 cut(s) 317
PaeI GCATGC 2 cut(s) 297, 908
PaqCI CACCTGC 1 cut(s) 1828
PciI ACATGT 1 cut(s) 1069
PfeI GAWTC 7 cut(s) 199, 215, 1060, 1444, 1610, 1847, 2024
PfoI TCCNGGA 1 cut(s) 1107
PmeI GTTTAAAC 1 cut(s) 1531
Ppu21I YACGTR 2 cut(s) 1572, 1677
PscI ACATGT 1 cut(s) 1069
PshBI ATTAAT 2 cut(s) 642, 852
Psp6I CCWGG 3 cut(s) 348, 993, 1348
PspGI CCWGG 3 cut(s) 348, 993, 1348
PspN4I GGNNCC 4 cut(s) 927, 992, 1295, 1662
PspOMI GGGCCC 1 cut(s) 990
PspPI GGNCC 3 cut(s) 990, 991, 1339
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 1345
RsaI GTAC 7 cut(s) 418, 726, 732, 1239, 1364, 1574, 1679
RsaNI GTAC 7 cut(s) 417, 725, 731, 1238, 1363, 1573, 1678
RseI CAYNNNNRTG 3 cut(s) 317, 1068, 1455
SacII CCGCGG 1 cut(s) 783
SaqAI TTAA 9 cut(s) 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
Sau3AI GATC 5 cut(s) 1345, 1374, 1584, 2017, 2072
Sau96I GGNCC 3 cut(s) 990, 991, 1339
ScaI AGTACT 1 cut(s) 418
ScrFI CCNGG 4 cut(s) 350, 995, 1109, 1350
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 9 cut(s) 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
SfcI CTRYAG 6 cut(s) 143, 412, 741, 792, 899, 985
Sfr303I CCGCGG 1 cut(s) 783
SgrBI CCGCGG 1 cut(s) 783
SmiMI CAYNNNNRTG 3 cut(s) 317, 1068, 1455
SmlI CTYRAG 2 cut(s) 1298, 1851
SmoI CTYRAG 2 cut(s) 1298, 1851
SnaBI TACGTA 1 cut(s) 1572
SphI GCATGC 2 cut(s) 297, 908
SsiI CCGC 7 cut(s) 125, 212, 780, 782, 887, 1600, 2039
SspI AATATT 1 cut(s) 844
SspMI CTAG 4 cut(s) 753, 1343, 1520, 2021
StyD4I CCNGG 4 cut(s) 348, 993, 1107, 1348
StyI CCWWGG 1 cut(s) 2167
TaiI ACGT 2 cut(s) 1574, 1679
TaqI TCGA 4 cut(s) 202, 228, 1320, 1425
TatI WGTACW 3 cut(s) 416, 724, 1237
TauI GCSGC 2 cut(s) 1602, 2042
TfiI GAWTC 7 cut(s) 199, 215, 1060, 1444, 1610, 1847, 2024
Tru1I TTAA 9 cut(s) 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
Tru9I TTAA 9 cut(s) 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
TscAI CASTG 3 cut(s) 96, 989, 1419
TseFI GTSAC 3 cut(s) 1025, 1672, 1777
TseI GCWGC 8 cut(s) 60, 142, 1210, 1498, 1514, 1727, 1823, 1976
Tsp45I GTSAC 3 cut(s) 1025, 1672, 1777
TspDTI ATGAA 9 cut(s) 167, 375, 713, 849, 926, 1052, 1418, 1448, 1860
TspRI CASTG 3 cut(s) 96, 989, 1419
VspI ATTAAT 2 cut(s) 642, 852
XagI CCTNNNNNAGG 1 cut(s) 1301
XapI RAATTY 1 cut(s) 1391
XbaI TCTAGA 1 cut(s) 2020
XceI RCATGY 4 cut(s) 297, 398, 908, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 1257
XspI CTAG 4 cut(s) 753, 1343, 1520, 2021
ZrmI AGTACT 1 cut(s) 418
Zsp2I ATGCAT 2 cut(s) 1099, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.