Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G52620 |
| fragaria_vesca | FvH4_6g30030 |
| malus_domestica | MD17G1208200.v1.1 |
| prunus_persica | Prupe.3G082900_v2.0.a1 |
| pyrus_communis | pycom17g21100 |
| rosa_chinensis | RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071 |
| rosa_laevigata | RLG00000019500 |
| rosa_multiflora | Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00108610 |
| rosa_rugosa | Rorug02G0327800 |
| rosa_samantha | Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500 |
| rosa_wichuraiana | Rw2G030950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1828 |
| Acc36I | ACCTGC | 1 cut(s) | 1828 |
| AccI | GTMKAC | 1 cut(s) | 1257 |
| AccII | CGCG | 2 cut(s) | 212, 782 |
| AciI | CCGC | 7 cut(s) | 125, 212, 780, 782, 887, 1600, 2039 |
| AclWI | GGATC | 1 cut(s) | 1340 |
| AcsI | RAATTY | 1 cut(s) | 1391 |
| AcuI | CTGAAG | 1 cut(s) | 2205 |
| AfaI | GTAC | 7 cut(s) | 418, 726, 732, 1239, 1364, 1574, 1679 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1303, 1908 |
| AflIII | ACRYGT | 1 cut(s) | 1069 |
| AjnI | CCWGG | 3 cut(s) | 348, 993, 1348 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 905, 937 |
| AleI | CACNNNNGTG | 1 cut(s) | 317 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 206, 238 |
| AluBI | AGCT | 9 cut(s) | 100, 192, 265, 635, 771, 1055, 1622, 1976, 2189 |
| AluI | AGCT | 9 cut(s) | 100, 192, 265, 635, 771, 1055, 1622, 1976, 2189 |
| AlwI | GGATC | 1 cut(s) | 1340 |
| AoxI | GGCC | 4 cut(s) | 990, 1171, 1339, 1556 |
| ApaI | GGGCCC | 1 cut(s) | 994 |
| ApeKI | GCWGC | 8 cut(s) | 60, 142, 1210, 1498, 1514, 1727, 1823, 1976 |
| ApoI | RAATTY | 1 cut(s) | 1391 |
| AseI | ATTAAT | 2 cut(s) | 642, 852 |
| AspS9I | GGNCC | 3 cut(s) | 990, 991, 1339 |
| AsuC2I | CCSGG | 1 cut(s) | 1109 |
| AsuHPI | GGTGA | 6 cut(s) | 271, 395, 401, 442, 569, 1552 |
| BaeGI | GKGCMC | 1 cut(s) | 994 |
| BanII | GRGCYC | 1 cut(s) | 994 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1965, 1997 |
| BauI | CACGAG | 1 cut(s) | 1650 |
| BbsI | GAAGAC | 1 cut(s) | 2253 |
| BbvCI | CCTCAGC | 1 cut(s) | 1751 |
| BbvI | GCAGC | 8 cut(s) | 47, 129, 1197, 1501, 1510, 1739, 1810, 1963 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 39, 73, 282, 316, 755, 789 |
| BciT130I | CCWGG | 3 cut(s) | 350, 995, 1350 |
| BclI | TGATCA | 2 cut(s) | 1374, 1584 |
| BcnI | CCSGG | 1 cut(s) | 1109 |
| BfaI | CTAG | 4 cut(s) | 753, 1343, 1520, 2021 |
| BfmI | CTRYAG | 6 cut(s) | 143, 412, 741, 792, 899, 985 |
| BfuAI | ACCTGC | 1 cut(s) | 1828 |
| BmcAI | AGTACT | 1 cut(s) | 418 |
| Bme1390I | CCNGG | 4 cut(s) | 350, 995, 1109, 1350 |
| BmgT120I | GGNCC | 3 cut(s) | 990, 991, 1339 |
| BmiI | GGNNCC | 4 cut(s) | 927, 992, 1295, 1662 |
| BmrFI | CCNGG | 4 cut(s) | 350, 995, 1109, 1350 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmsI | GCATC | 9 cut(s) | 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BpiI | GAAGAC | 1 cut(s) | 2253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1751 |
| BpuEI | CTTGAG | 2 cut(s) | 1319, 1836 |
| BpuMI | CCSGG | 1 cut(s) | 1109 |
| BsaAI | YACGTR | 2 cut(s) | 1572, 1677 |
| BsaJI | CCNNGG | 3 cut(s) | 780, 993, 2167 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1303, 1908 |
| Bse1I | ACTGG | 2 cut(s) | 41, 2087 |
| Bse3DI | GCAATG | 3 cut(s) | 617, 915, 1812 |
| BseBI | CCWGG | 3 cut(s) | 350, 995, 1350 |
| BseDI | CCNNGG | 3 cut(s) | 780, 993, 2167 |
| BseGI | GGATG | 7 cut(s) | 187, 585, 807, 1450, 1516, 1899, 1913 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1303, 1908 |
| BseMI | GCAATG | 3 cut(s) | 617, 915, 1812 |
| BseMII | CTCAG | 2 cut(s) | 360, 1742 |
| BseNI | ACTGG | 2 cut(s) | 41, 2087 |
| BseRI | GAGGAG | 3 cut(s) | 497, 905, 1316 |
| BseSI | GKGCMC | 1 cut(s) | 994 |
| BseXI | GCAGC | 8 cut(s) | 47, 129, 1197, 1501, 1510, 1739, 1810, 1963 |
| BsgI | GTGCAG | 2 cut(s) | 1500, 1783 |
| Bsh1236I | CGCG | 2 cut(s) | 212, 782 |
| BshFI | GGCC | 4 cut(s) | 992, 1173, 1341, 1558 |
| BsiSI | CCGG | 3 cut(s) | 46, 824, 1108 |
| BslFI | GGGAC | 1 cut(s) | 1124 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1303, 1908 |
| BsmFI | GGGAC | 1 cut(s) | 1124 |
| BsnI | GGCC | 4 cut(s) | 992, 1173, 1341, 1558 |
| Bsp120I | GGGCCC | 1 cut(s) | 990 |
| Bsp1286I | GDGCHC | 1 cut(s) | 994 |
| Bsp1407I | TGTACA | 1 cut(s) | 724 |
| Bsp143I | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| Bsp19I | CCATGG | 1 cut(s) | 2167 |
| BspACI | CCGC | 7 cut(s) | 125, 212, 780, 782, 887, 1600, 2039 |
| BspANI | GGCC | 4 cut(s) | 992, 1173, 1341, 1558 |
| BspCNI | CTCAG | 2 cut(s) | 361, 1743 |
| BspFNI | CGCG | 2 cut(s) | 212, 782 |
| BspLI | GGNNCC | 4 cut(s) | 927, 992, 1295, 1662 |
| BspMAI | CTGCAG | 1 cut(s) | 147 |
| BspMI | ACCTGC | 1 cut(s) | 1828 |
| BspPI | GGATC | 1 cut(s) | 1340 |
| BsrDI | GCAATG | 3 cut(s) | 617, 915, 1812 |
| BsrGI | TGTACA | 1 cut(s) | 724 |
| BsrI | ACTGG | 2 cut(s) | 41, 2087 |
| BssECI | CCNNGG | 3 cut(s) | 780, 993, 2167 |
| BssMI | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| BssSI | CACGAG | 1 cut(s) | 1650 |
| BssT1I | CCWWGG | 1 cut(s) | 2167 |
| Bst2BI | CACGAG | 1 cut(s) | 1650 |
| Bst2UI | CCWGG | 3 cut(s) | 350, 995, 1350 |
| Bst6I | CTCTTC | 1 cut(s) | 908 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1823 |
| BstAUI | TGTACA | 1 cut(s) | 724 |
| BstBAI | YACGTR | 2 cut(s) | 1572, 1677 |
| BstC8I | GCNNGC | 5 cut(s) | 295, 346, 906, 1147, 1556 |
| BstDEI | CTNAG | 2 cut(s) | 369, 1751 |
| BstDSI | CCRYGG | 2 cut(s) | 780, 2167 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1301 |
| BstF5I | GGATG | 7 cut(s) | 187, 585, 807, 1450, 1516, 1899, 1913 |
| BstFNI | CGCG | 2 cut(s) | 212, 782 |
| BstKTI | GATC | 5 cut(s) | 1348, 1377, 1587, 2020, 2075 |
| BstMBI | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 313, 619, 1052, 1727, 1823, 2195 |
| BstNI | CCWGG | 3 cut(s) | 350, 995, 1350 |
| BstNSI | RCATGY | 4 cut(s) | 297, 398, 908, 1073 |
| BstSCI | CCNGG | 4 cut(s) | 348, 993, 1107, 1348 |
| BstSFI | CTRYAG | 6 cut(s) | 143, 412, 741, 792, 899, 985 |
| BstSLI | GKGCMC | 1 cut(s) | 994 |
| BstSNI | TACGTA | 1 cut(s) | 1572 |
| BstUI | CGCG | 2 cut(s) | 212, 782 |
| BstV1I | GCAGC | 8 cut(s) | 47, 129, 1197, 1501, 1510, 1739, 1810, 1963 |
| BstV2I | GAAGAC | 1 cut(s) | 2253 |
| BstX2I | RGATCY | 1 cut(s) | 1345 |
| BstYI | RGATCY | 1 cut(s) | 1345 |
| BsuRI | GGCC | 4 cut(s) | 992, 1173, 1341, 1558 |
| BtgI | CCRYGG | 2 cut(s) | 780, 2167 |
| BtsCI | GGATG | 7 cut(s) | 187, 585, 807, 1450, 1516, 1899, 1913 |
| BtsIMutI | CAGTG | 3 cut(s) | 89, 982, 1412 |
| BveI | ACCTGC | 1 cut(s) | 1828 |
| Cac8I | GCNNGC | 5 cut(s) | 295, 346, 906, 1147, 1556 |
| Cfr13I | GGNCC | 3 cut(s) | 990, 991, 1339 |
| Cfr42I | CCGCGG | 1 cut(s) | 783 |
| Csp6I | GTAC | 7 cut(s) | 417, 725, 731, 1238, 1363, 1573, 1678 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1462, 1497 |
| CviQI | GTAC | 7 cut(s) | 417, 725, 731, 1238, 1363, 1573, 1678 |
| DdeI | CTNAG | 2 cut(s) | 369, 1751 |
| DpnI | GATC | 5 cut(s) | 1347, 1376, 1586, 2019, 2074 |
| DpnII | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| DraI | TTTAAA | 1 cut(s) | 1531 |
| Eam1104I | CTCTTC | 1 cut(s) | 908 |
| EarI | CTCTTC | 1 cut(s) | 908 |
| Eco105I | TACGTA | 1 cut(s) | 1572 |
| Eco130I | CCWWGG | 1 cut(s) | 2167 |
| Eco24I | GRGCYC | 1 cut(s) | 994 |
| Eco57I | CTGAAG | 1 cut(s) | 2205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1301 |
| EcoO109I | RGGNCCY | 3 cut(s) | 990, 991, 1339 |
| EcoRII | CCWGG | 3 cut(s) | 348, 993, 1348 |
| EcoT14I | CCWWGG | 1 cut(s) | 2167 |
| EcoT22I | ATGCAT | 2 cut(s) | 1099, 1252 |
| EcoT38I | GRGCYC | 1 cut(s) | 994 |
| ErhI | CCWWGG | 1 cut(s) | 2167 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1176, 1208, 1701, 1733, 2178, 2210 |
| FaqI | GGGAC | 1 cut(s) | 1124 |
| FbaI | TGATCA | 2 cut(s) | 1374, 1584 |
| FblI | GTMKAC | 1 cut(s) | 1257 |
| FokI | GGATG | 7 cut(s) | 194, 592, 814, 1437, 1523, 1906, 1920 |
| FriOI | GRGCYC | 1 cut(s) | 994 |
| FspBI | CTAG | 4 cut(s) | 753, 1343, 1520, 2021 |
| HaeIII | GGCC | 4 cut(s) | 992, 1173, 1341, 1558 |
| HapII | CCGG | 3 cut(s) | 46, 824, 1108 |
| HincII | GTYRAC | 1 cut(s) | 1326 |
| HindII | GTYRAC | 1 cut(s) | 1326 |
| HindIII | AAGCTT | 1 cut(s) | 98 |
| HinfI | GANTC | 7 cut(s) | 199, 215, 1060, 1444, 1610, 1847, 2024 |
| HpaI | GTTAAC | 1 cut(s) | 1326 |
| HpaII | CCGG | 3 cut(s) | 46, 824, 1108 |
| HphI | GGTGA | 6 cut(s) | 271, 395, 401, 442, 569, 1552 |
| Hpy166II | GTNNAC | 8 cut(s) | 208, 1258, 1326, 1464, 1575, 1680, 1715, 1806 |
| Hpy188I | TCNGA | 8 cut(s) | 282, 370, 930, 1221, 1286, 1615, 1917, 2185 |
| Hpy188III | TCNNGA | 6 cut(s) | 239, 1454, 1853, 1877, 2021, 2237 |
| Hpy8I | GTNNAC | 8 cut(s) | 208, 1258, 1326, 1464, 1575, 1680, 1715, 1806 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyAV | CCTTC | 9 cut(s) | 443, 448, 458, 465, 595, 694, 868, 1703, 2104 |
| HpyCH4IV | ACGT | 2 cut(s) | 1571, 1676 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 313, 619, 1052, 1727, 1823, 2195 |
| HpyF3I | CTNAG | 2 cut(s) | 369, 1751 |
| HpySE526I | ACGT | 2 cut(s) | 1571, 1676 |
| Ksp22I | TGATCA | 2 cut(s) | 1374, 1584 |
| KspAI | GTTAAC | 1 cut(s) | 1326 |
| KspI | CCGCGG | 1 cut(s) | 783 |
| Kzo9I | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| LmnI | GCTCC | 4 cut(s) | 632, 1052, 1619, 1660 |
| Lsp1109I | GCAGC | 8 cut(s) | 47, 129, 1197, 1501, 1510, 1739, 1810, 1963 |
| LweI | GCATC | 9 cut(s) | 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146 |
| MaeI | CTAG | 4 cut(s) | 753, 1343, 1520, 2021 |
| MaeII | ACGT | 2 cut(s) | 1571, 1676 |
| MaeIII | GTNAC | 3 cut(s) | 1025, 1672, 1777 |
| MalI | GATC | 5 cut(s) | 1347, 1376, 1586, 2019, 2074 |
| MboI | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| MfeI | CAATTG | 1 cut(s) | 1329 |
| MflI | RGATCY | 1 cut(s) | 1345 |
| MhlI | GDGCHC | 1 cut(s) | 994 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| Mph1103I | ATGCAT | 2 cut(s) | 1099, 1252 |
| MseI | TTAA | 9 cut(s) | 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103 |
| MslI | CAYNNNNRTG | 3 cut(s) | 317, 1068, 1455 |
| MspA1I | CMGCKG | 1 cut(s) | 782 |
| MspI | CCGG | 3 cut(s) | 46, 824, 1108 |
| MspR9I | CCNGG | 4 cut(s) | 350, 995, 1109, 1350 |
| MssI | GTTTAAAC | 1 cut(s) | 1531 |
| MunI | CAATTG | 1 cut(s) | 1329 |
| MvaI | CCWGG | 3 cut(s) | 350, 995, 1350 |
| MvnI | CGCG | 2 cut(s) | 212, 782 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 313, 619, 1052, 1727, 1823, 2195 |
| NciI | CCSGG | 1 cut(s) | 1109 |
| NcoI | CCATGG | 1 cut(s) | 2167 |
| NdeII | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| NlaIV | GGNNCC | 4 cut(s) | 927, 992, 1295, 1662 |
| NmeAIII | GCCGAG | 1 cut(s) | 198 |
| NmuCI | GTSAC | 3 cut(s) | 1025, 1672, 1777 |
| NsiI | ATGCAT | 2 cut(s) | 1099, 1252 |
| NspI | RCATGY | 4 cut(s) | 297, 398, 908, 1073 |
| OliI | CACNNNNGTG | 1 cut(s) | 317 |
| PaeI | GCATGC | 2 cut(s) | 297, 908 |
| PaqCI | CACCTGC | 1 cut(s) | 1828 |
| PciI | ACATGT | 1 cut(s) | 1069 |
| PfeI | GAWTC | 7 cut(s) | 199, 215, 1060, 1444, 1610, 1847, 2024 |
| PfoI | TCCNGGA | 1 cut(s) | 1107 |
| PmeI | GTTTAAAC | 1 cut(s) | 1531 |
| Ppu21I | YACGTR | 2 cut(s) | 1572, 1677 |
| PscI | ACATGT | 1 cut(s) | 1069 |
| PshBI | ATTAAT | 2 cut(s) | 642, 852 |
| Psp6I | CCWGG | 3 cut(s) | 348, 993, 1348 |
| PspGI | CCWGG | 3 cut(s) | 348, 993, 1348 |
| PspN4I | GGNNCC | 4 cut(s) | 927, 992, 1295, 1662 |
| PspOMI | GGGCCC | 1 cut(s) | 990 |
| PspPI | GGNCC | 3 cut(s) | 990, 991, 1339 |
| PstI | CTGCAG | 1 cut(s) | 147 |
| PsuI | RGATCY | 1 cut(s) | 1345 |
| RsaI | GTAC | 7 cut(s) | 418, 726, 732, 1239, 1364, 1574, 1679 |
| RsaNI | GTAC | 7 cut(s) | 417, 725, 731, 1238, 1363, 1573, 1678 |
| RseI | CAYNNNNRTG | 3 cut(s) | 317, 1068, 1455 |
| SacII | CCGCGG | 1 cut(s) | 783 |
| SaqAI | TTAA | 9 cut(s) | 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103 |
| Sau3AI | GATC | 5 cut(s) | 1345, 1374, 1584, 2017, 2072 |
| Sau96I | GGNCC | 3 cut(s) | 990, 991, 1339 |
| ScaI | AGTACT | 1 cut(s) | 418 |
| ScrFI | CCNGG | 4 cut(s) | 350, 995, 1109, 1350 |
| SduI | GDGCHC | 1 cut(s) | 994 |
| SfaNI | GCATC | 9 cut(s) | 172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146 |
| SfcI | CTRYAG | 6 cut(s) | 143, 412, 741, 792, 899, 985 |
| Sfr303I | CCGCGG | 1 cut(s) | 783 |
| SgrBI | CCGCGG | 1 cut(s) | 783 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 317, 1068, 1455 |
| SmlI | CTYRAG | 2 cut(s) | 1298, 1851 |
| SmoI | CTYRAG | 2 cut(s) | 1298, 1851 |
| SnaBI | TACGTA | 1 cut(s) | 1572 |
| SphI | GCATGC | 2 cut(s) | 297, 908 |
| SsiI | CCGC | 7 cut(s) | 125, 212, 780, 782, 887, 1600, 2039 |
| SspI | AATATT | 1 cut(s) | 844 |
| SspMI | CTAG | 4 cut(s) | 753, 1343, 1520, 2021 |
| StyD4I | CCNGG | 4 cut(s) | 348, 993, 1107, 1348 |
| StyI | CCWWGG | 1 cut(s) | 2167 |
| TaiI | ACGT | 2 cut(s) | 1574, 1679 |
| TaqI | TCGA | 4 cut(s) | 202, 228, 1320, 1425 |
| TatI | WGTACW | 3 cut(s) | 416, 724, 1237 |
| TauI | GCSGC | 2 cut(s) | 1602, 2042 |
| TfiI | GAWTC | 7 cut(s) | 199, 215, 1060, 1444, 1610, 1847, 2024 |
| Tru1I | TTAA | 9 cut(s) | 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103 |
| Tru9I | TTAA | 9 cut(s) | 309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103 |
| TscAI | CASTG | 3 cut(s) | 96, 989, 1419 |
| TseFI | GTSAC | 3 cut(s) | 1025, 1672, 1777 |
| TseI | GCWGC | 8 cut(s) | 60, 142, 1210, 1498, 1514, 1727, 1823, 1976 |
| Tsp45I | GTSAC | 3 cut(s) | 1025, 1672, 1777 |
| TspDTI | ATGAA | 9 cut(s) | 167, 375, 713, 849, 926, 1052, 1418, 1448, 1860 |
| TspRI | CASTG | 3 cut(s) | 96, 989, 1419 |
| VspI | ATTAAT | 2 cut(s) | 642, 852 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1301 |
| XapI | RAATTY | 1 cut(s) | 1391 |
| XbaI | TCTAGA | 1 cut(s) | 2020 |
| XceI | RCATGY | 4 cut(s) | 297, 398, 908, 1073 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 13 |
| XmiI | GTMKAC | 1 cut(s) | 1257 |
| XspI | CTAG | 4 cut(s) | 753, 1343, 1520, 2021 |
| ZrmI | AGTACT | 1 cut(s) | 418 |
| Zsp2I | ATGCAT | 2 cut(s) | 1099, 1252 |