Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Forward (+)

53297034 .. 53298310

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGTGGAAGATGGTTGCGCTGAGAATGCAATTTCTTTGCTGATCTTGGCCAGCAGCGTTCTAGGCAAGGTTCTCAAGTACTGCAAGAAGCACATAGATGACAAGGAGGGTGATCCTAAGACTTGGGACACCAATTACATAAAGGTGGACCATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

52

Amino Acids

5.82

Weight (kDa)

5.47

Isoelectric Point (pI)

12.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	1 - 31	3e-06	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	42, 112
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	107
BssMI	GATC	2 cut(s)	42, 112
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	21, 117
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	45, 115
BstMBI	GATC	2 cut(s)	42, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 63
BstV1I	GCAGC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	21, 117
DpnI	GATC	2 cut(s)	44, 114
DpnII	GATC	2 cut(s)	42, 112
EaeI	YGGCCR	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	148
FaiI	YATR	3 cut(s)	95, 140, 153
FaqI	GGGAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	29, 84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 63
HpyF3I	CTNAG	2 cut(s)	21, 117
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	42, 112
LpnPI	CCDG	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	62
MalI	GATC	2 cut(s)	44, 114
MboI	GATC	2 cut(s)	42, 112
MboII	GAAGA	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	30, 133
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	1 cut(s)	100
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	96, 143
Msp20I	TGGCCA	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	26, 63
NdeII	GATC	2 cut(s)	42, 112
PctI	GAATGC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	96, 143
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	42, 112
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	80
SetI	ASST	2 cut(s)	72, 147
SgeI	CNNG	8 cut(s)	58, 63, 74, 79, 88, 97, 115, 135
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	96, 143
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	30, 133
SspMI	CTAG	1 cut(s)	62
TasI	AATT	2 cut(s)	30, 133
TatI	WGTACW	1 cut(s)	78
TseI	GCWGC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	148
XspI	CTAG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.