Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Forward (+)

50817689 .. 50821649

Gene Structure 3961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGTCAAAGACTCTTCTCTCTCGCATCAAACCCCTTCACAGCCGCAAACCACTTAAGCTAGTCTATGACACCATCCGGATTCTCACAACAGATGATAAATGGGAGCAGTCCCTCGCAACCGAATTCTCCGAAACCGAAACACTTGTTTCTGAAGTTGCCCATTTCGTTTTGGACAGAATACCCAATGCCGAGTTGGGTTTGAAGTTCTTTGACTGGGCTTTCCGGCGACCCTATTGCTGCTCTCCAAATGGGTTGGCGTATTCTTCACTGTTGAAGCTTTTGGCGAGGTTTGGAGTGGTTGCGGAGATTGAGTTGGTGCTGCAGAGCATGAAGTTGGAACAAGTAGAGCCGAGTAAGGATGCTTTGAGCTTTGTGATTCGAGTTTACGCGGATTCTGGGTTCGTCGATAAGGCTCTTGAATTGTATAGTTTTGGGGTCAAGGTGTGTGGTTTTGTTCCGAGTGTTTTCGCATGCAATTCCTTGCTGAACACACTTGTGAAGATTGGCAGAGTTGATGTCGCACGCCAGGTGTATGATGAAATGTCTGAGAAAGGTGGTGGTGATGGTGAGCATGTGTGTATAGATAACTACAGTACTTGTATCATGGTGAGGGGGTTGTGTAAGGAAGGGAAGGTTGAAGAAGGGAGAAGGTTGATTGAGGAGAGGTGGGGAGAGAATTGTGTGCCGAATGTTGTGTTCTACAATACGCTTATTGATGGATATTGTAAGAGAGGTGAGGTTGAAAATGCTAATGGGATGTTTAAGGAGTTGAAATTGAAGGGGTTTCTGCCTACATTGCAAACCTATGGAGCTTTGATTAATGGGTATTGCAAAGTAGGGAACTTTGTAGCGATTGATAGGCTTTTGATGGAAATGAAGGAGAGAGGTTTGAGGGTCAATGTACAGGTACATAATACTATAGTTGAGGCTAGATGTAAGCACGATAGCTGTGCAACCGCGGTTGATACTGTAGCAAGGATGATTGAGAGTGGTTGTGAGCCGGATATTACAACCTATAATATTTTGATTAATAGTTCATGTAAGAAAGGGAAGGTTGAGGAAGCGGAGGAGTTTCTACAGCATGCAATGAAGAGGGGAGTGGTTCTGAATGAGTTTAGTTATACTCCTGTTGTTCAAGTCTATTGCAGACGAGGGGAACACTGTAGGGCCCTGGATTTGCTTGTTGAGATGACAAAAAGAGGTCACAAACCTGATTTGGTTGCCTTTGGAGCTTTGATTCATGGACATGTTGTTTCTGGGGAAGTTGATTACGCATTGACAGTCCGGGACAGAATGATAGAAAATGGAATACTCCCCGATGCTTGCATTTACAATGTGTTGATGAGTGGCCTTTGCAAGAAAGGGAGGCTTCCTACTGCCAAACTGCTGCTTGGTCAGATGCTTGACCAAAATGTACTACCTGATGCATTTGTCTACGCCACATTGGTAGATGGGTTAATCAGAAATGGGAACCTTGAGGAGGCTAAAAATATATTCGAGTTAACAATTGAAAAGGGCCTAGATCCTGGTGTTGTGGGGTACAATGCTATGATCAAGGGTTTCTGCAAATTTGGAACAATGAATGATGCACTGTCATTCCTCGAAAAGATGAAGAAAAGGAATCATCATCCTGATGGGTTTACTTACTCCACAATAATTGATGGGTATGTCAAGCAGCATAATTTGGATGCTGCACTAGAAATGTTTAACCAGATGGTGAAACAGAGATGCAGGCCAAATGTCATTACGTACACCTCCTTGATCAATGGGTTTTGCCGCAAAGGAGATTCTGATGGAGCTGTAAAAACTTTCGTAGAGATGCAATCTCGTGGTGTGGAGCCAAATATAGTCACGTACAGCATACTTATTGGAAACTTTTGCAAGGAAGGTAAACTTGCAAAAGCAGCCTCTTTTTTTGAACTAATGCTGAGGAAAAAGTGCAGTCCTAATGATGTCACTATCCATTATTTGCTAAATGGGTTTACAAACATTGCACCTGCTGCAATTTCAAAGGAAGTGAATGAATCTCAAGAAAAGGAGAAATCTATTTTTCTTGATTTCTATAAAAGGATGATAGCTGATGGATGGTTTCAGAAGTCTGCTGTCTATAATTCCATTCTCATTTGTCTTTGTCAGTATGGAATGGTTGAAGCTGCATTACAGTTTAACACTAAGTTTAGAAGTAAAGGTATTGATCTAGATTCTGTTTCTTTTGCGGCTGTGCTACATGGTCTTTTCTTGGGAGGAAGATCAAAGGACTGGAAGAATATCATTTATTTTAACTTGAAGGAAAAAGAACTCCAAACTGCTGTCAAATACTCGCATATAATAGATGCACAGTTCCATGGAGGAAGAATATCTGAAGCTACACTTGCTTTACGGTCATTAGTTGAAGATGATAAGCCTCAACATCAAGAAGTGGAAGACAGAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1 PPR PPR_1 PPR_2 PPR_3 p450

Protein Analysis

812

Amino Acids

91.35

Weight (kDa)

7.45

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	153 - 208	8.7e-08	PPR repeat family
PPR_3	PF13812	226 - 276	1.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	226 - 257	4.1e-11	PPR repeat
PPR_2	PF13041	229 - 278	9.4e-17	PPR repeat family
PPR	PF01535	232 - 262	1.4e-07	PPR repeat
PPR	PF01535	268 - 297	9.3e-06	PPR repeat
PPR_2	PF13041	268 - 313	8.5e-08	PPR repeat family
PPR_3	PF13812	287 - 344	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	300 - 348	2.1e-08	PPR repeat family
PPR_1	PF12854	331 - 360	9.3e-12	PPR repeat
PPR_2	PF13041	334 - 375	1.1e-09	PPR repeat family
PPR	PF01535	338 - 367	1e-05	PPR repeat
PPR_2	PF13041	370 - 416	6.6e-08	PPR repeat family
PPR_3	PF13812	393 - 449	5.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	435 - 467	3e-07	PPR repeat
PPR_2	PF13041	439 - 487	4.2e-10	PPR repeat family
PPR_3	PF13812	463 - 521	7.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	505 - 538	5.7e-09	PPR repeat
PPR_2	PF13041	509 - 558	6.2e-17	PPR repeat family
PPR	PF01535	514 - 541	2e-06	PPR repeat
PPR_3	PF13812	534 - 590	1.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	541 - 573	1.2e-07	PPR repeat
PPR_2	PF13041	547 - 593	2e-17	PPR repeat family
PPR	PF01535	547 - 577	3.8e-06	PPR repeat
PPR_long	PF17177	558 - 659	7.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	577 - 608	3.5e-12	PPR repeat
PPR_2	PF13041	579 - 628	2.5e-19	PPR repeat family
PPR_3	PF13812	580 - 627	1.1e-10	Pentatricopeptide repeat domain
PPR	PF01535	582 - 612	1.7e-08	PPR repeat
PPR_3	PF13812	605 - 661	4.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	610 - 642	6.5e-10	PPR repeat
PPR_2	PF13041	617 - 662	6.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2005
Acc36I	ACCTGC	1 cut(s)	2005
AccI	GTMKAC	1 cut(s)	1434
AccII	CGCG	2 cut(s)	389, 959
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	8 cut(s)	43, 302, 389, 957, 959, 1064, 1777, 2216
AclWI	GGATC	1 cut(s)	1517
AcsI	RAATTY	2 cut(s)	122, 1568
AcuI	CTGAAG	2 cut(s)	171, 2382
AfaI	GTAC	7 cut(s)	595, 903, 909, 1416, 1541, 1751, 1856
AfiI	CCNNNNNNNGG	1 cut(s)	1480
AflII	CTTAAG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	1246
AjnI	CCWGG	3 cut(s)	525, 1170, 1525
AleI	CACNNNNGTG	1 cut(s)	494
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AlwI	GGATC	1 cut(s)	1517
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	4 cut(s)	1167, 1348, 1516, 1733
ApaI	GGGCCC	1 cut(s)	1171
ApeKI	GCWGC	8 cut(s)	237, 319, 1387, 1675, 1691, 1904, 2000, 2153
ApoI	RAATTY	2 cut(s)	122, 1568
AseI	ATTAAT	2 cut(s)	819, 1029
AspS9I	GGNCC	3 cut(s)	1167, 1168, 1516
AsuC2I	CCSGG	1 cut(s)	1286
AsuHPI	GGTGA	5 cut(s)	572, 578, 619, 746, 1729
BaeGI	GKGCMC	1 cut(s)	1171
BanII	GRGCYC	1 cut(s)	1171
BarI	GAAGNNNNNNTAC	2 cut(s)	2142, 2174
BauI	CACGAG	1 cut(s)	1827
BbsI	GAAGAC	1 cut(s)	2430
BbvCI	CCTCAGC	1 cut(s)	1928
BbvI	GCAGC	8 cut(s)	224, 306, 1374, 1678, 1687, 1916, 1987, 2140
BcgI	CGANNNNNNTGC	4 cut(s)	216, 250, 932, 966
BciT130I	CCWGG	3 cut(s)	527, 1172, 1527
BclI	TGATCA	2 cut(s)	1551, 1761
BcnI	CCSGG	1 cut(s)	1286
BfaI	CTAG	5 cut(s)	59, 930, 1520, 1697, 2198
BfmI	CTRYAG	6 cut(s)	320, 589, 918, 969, 1076, 1162
BfrI	CTTAAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	2005
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	527, 1172, 1286, 1527
BmgT120I	GGNCC	3 cut(s)	1167, 1168, 1516
BmiI	GGNNCC	3 cut(s)	1169, 1472, 1839
BmrFI	CCNGG	4 cut(s)	527, 1172, 1286, 1527
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	2430
Bpu10I	CCTNAGC	1 cut(s)	1928
BpuEI	CTTGAG	2 cut(s)	1496, 2013
BpuMI	CCSGG	1 cut(s)	1286
BsaAI	YACGTR	2 cut(s)	1749, 1854
BsaJI	CCNNGG	3 cut(s)	957, 1170, 2344
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	1480
Bse1I	ACTGG	2 cut(s)	218, 2264
Bse3DI	GCAATG	3 cut(s)	794, 1092, 1989
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	527, 1172, 1527
BseDI	CCNNGG	3 cut(s)	957, 1170, 2344
BseGI	GGATG	8 cut(s)	72, 364, 762, 984, 1627, 1693, 2076, 2090
BseLI	CCNNNNNNNGG	1 cut(s)	1480
BseMI	GCAATG	3 cut(s)	794, 1092, 1989
BseMII	CTCAG	2 cut(s)	537, 1919
BseNI	ACTGG	2 cut(s)	218, 2264
BseRI	GAGGAG	3 cut(s)	674, 1082, 1493
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	8 cut(s)	224, 306, 1374, 1678, 1687, 1916, 1987, 2140
BsgI	GTGCAG	2 cut(s)	1677, 1960
Bsh1236I	CGCG	2 cut(s)	389, 959
BshFI	GGCC	4 cut(s)	1169, 1350, 1518, 1735
BsiSI	CCGG	4 cut(s)	76, 223, 1001, 1285
BslFI	GGGAC	2 cut(s)	94, 1301
BslI	CCNNNNNNNGG	1 cut(s)	1480
BsmFI	GGGAC	2 cut(s)	94, 1301
BsnI	GGCC	4 cut(s)	1169, 1350, 1518, 1735
Bsp120I	GGGCCC	1 cut(s)	1167
Bsp1286I	GDGCHC	1 cut(s)	1171
Bsp13I	TCCGGA	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	901
Bsp143I	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
Bsp19I	CCATGG	1 cut(s)	2344
BspACI	CCGC	8 cut(s)	43, 302, 389, 957, 959, 1064, 1777, 2216
BspANI	GGCC	4 cut(s)	1169, 1350, 1518, 1735
BspCNI	CTCAG	2 cut(s)	538, 1920
BspEI	TCCGGA	1 cut(s)	75
BspFNI	CGCG	2 cut(s)	389, 959
BspLI	GGNNCC	3 cut(s)	1169, 1472, 1839
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	2005
BspPI	GGATC	1 cut(s)	1517
BspTI	CTTAAG	1 cut(s)	53
BsrDI	GCAATG	3 cut(s)	794, 1092, 1989
BsrGI	TGTACA	1 cut(s)	901
BsrI	ACTGG	2 cut(s)	218, 2264
BssECI	CCNNGG	3 cut(s)	957, 1170, 2344
BssMI	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
BssSI	CACGAG	1 cut(s)	1827
BssT1I	CCWWGG	1 cut(s)	2344
Bst2BI	CACGAG	1 cut(s)	1827
Bst2UI	CCWGG	3 cut(s)	527, 1172, 1527
Bst4CI	ACNGT	9 cut(s)	270, 593, 970, 1163, 1282, 1593, 2163, 2340, 2382
Bst6I	CTCTTC	2 cut(s)	18, 1085
BstAFI	CTTAAG	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	2000
BstAUI	TGTACA	1 cut(s)	901
BstBAI	YACGTR	2 cut(s)	1749, 1854
BstC8I	GCNNGC	5 cut(s)	472, 523, 1083, 1324, 1733
BstDEI	CTNAG	3 cut(s)	546, 1928, 2172
BstDSI	CCRYGG	2 cut(s)	957, 2344
BstENI	CCTNNNNNAGG	1 cut(s)	1478
BstF5I	GGATG	8 cut(s)	72, 364, 762, 984, 1627, 1693, 2076, 2090
BstFNI	CGCG	2 cut(s)	389, 959
BstKTI	GATC	5 cut(s)	1525, 1554, 1764, 2197, 2252
BstMBI	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
BstMWI	GCNNNNNNNGC	5 cut(s)	796, 1229, 1904, 2000, 2372
BstNI	CCWGG	3 cut(s)	527, 1172, 1527
BstNSI	RCATGY	4 cut(s)	474, 575, 1085, 1250
BstSCI	CCNGG	4 cut(s)	525, 1170, 1284, 1525
BstSFI	CTRYAG	6 cut(s)	320, 589, 918, 969, 1076, 1162
BstSLI	GKGCMC	1 cut(s)	1171
BstSNI	TACGTA	1 cut(s)	1749
BstUI	CGCG	2 cut(s)	389, 959
BstV1I	GCAGC	8 cut(s)	224, 306, 1374, 1678, 1687, 1916, 1987, 2140
BstV2I	GAAGAC	1 cut(s)	2430
BstX2I	RGATCY	1 cut(s)	1522
BstYI	RGATCY	1 cut(s)	1522
BsuRI	GGCC	4 cut(s)	1169, 1350, 1518, 1735
BtgI	CCRYGG	2 cut(s)	957, 2344
BtsCI	GGATG	8 cut(s)	72, 364, 762, 984, 1627, 1693, 2076, 2090
BtsIMutI	CAGTG	3 cut(s)	266, 1159, 1589
BveI	ACCTGC	1 cut(s)	2005
Cac8I	GCNNGC	5 cut(s)	472, 523, 1083, 1324, 1733
Cfr13I	GGNCC	3 cut(s)	1167, 1168, 1516
Cfr42I	CCGCGG	1 cut(s)	960
Csp6I	GTAC	7 cut(s)	594, 902, 908, 1415, 1540, 1750, 1855
CspCI	CAANNNNNGTGG	4 cut(s)	427, 462, 1639, 1674
CviQI	GTAC	7 cut(s)	594, 902, 908, 1415, 1540, 1750, 1855
DdeI	CTNAG	3 cut(s)	546, 1928, 2172
DpnI	GATC	5 cut(s)	1524, 1553, 1763, 2196, 2251
DpnII	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
Eam1104I	CTCTTC	2 cut(s)	18, 1085
EarI	CTCTTC	2 cut(s)	18, 1085
Eco105I	TACGTA	1 cut(s)	1749
Eco130I	CCWWGG	1 cut(s)	2344
Eco24I	GRGCYC	1 cut(s)	1171
Eco57I	CTGAAG	2 cut(s)	171, 2382
EcoNI	CCTNNNNNAGG	1 cut(s)	1478
EcoO109I	RGGNCCY	3 cut(s)	1167, 1168, 1516
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	525, 1170, 1525
EcoT14I	CCWWGG	1 cut(s)	2344
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	1 cut(s)	1171
ErhI	CCWWGG	1 cut(s)	2344
FalI	AAGNNNNNCTT	6 cut(s)	1353, 1385, 1878, 1910, 2355, 2387
FaqI	GGGAC	2 cut(s)	94, 1301
FbaI	TGATCA	2 cut(s)	1551, 1761
FblI	GTMKAC	1 cut(s)	1434
FokI	GGATG	8 cut(s)	59, 371, 769, 991, 1614, 1700, 2083, 2097
FriOI	GRGCYC	1 cut(s)	1171
FspBI	CTAG	5 cut(s)	59, 930, 1520, 1697, 2198
HaeIII	GGCC	4 cut(s)	1169, 1350, 1518, 1735
HapII	CCGG	4 cut(s)	76, 223, 1001, 1285
HincII	GTYRAC	1 cut(s)	1503
HindII	GTYRAC	1 cut(s)	1503
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	9 cut(s)	10, 79, 376, 392, 1237, 1621, 1787, 2024, 2201
HpaI	GTTAAC	1 cut(s)	1503
HpaII	CCGG	4 cut(s)	76, 223, 1001, 1285
HphI	GGTGA	5 cut(s)	572, 578, 619, 746, 1729
Hpy166II	GTNNAC	7 cut(s)	385, 1435, 1503, 1641, 1752, 1892, 1983
Hpy188III	TCNNGA	7 cut(s)	76, 416, 1631, 2030, 2054, 2198, 2414
Hpy8I	GTNNAC	7 cut(s)	385, 1435, 1503, 1641, 1752, 1892, 1983
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	9 cut(s)	270, 593, 970, 1163, 1282, 1593, 2163, 2340, 2382
HpyCH4IV	ACGT	2 cut(s)	1748, 1853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	796, 1229, 1904, 2000, 2372
HpyF3I	CTNAG	3 cut(s)	546, 1928, 2172
HpySE526I	ACGT	2 cut(s)	1748, 1853
Kpn2I	TCCGGA	1 cut(s)	75
Ksp22I	TGATCA	2 cut(s)	1551, 1761
KspAI	GTTAAC	1 cut(s)	1503
KspI	CCGCGG	1 cut(s)	960
Kzo9I	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
LmnI	GCTCC	5 cut(s)	103, 809, 1229, 1796, 1837
Lsp1109I	GCAGC	8 cut(s)	224, 306, 1374, 1678, 1687, 1916, 1987, 2140
MaeI	CTAG	5 cut(s)	59, 930, 1520, 1697, 2198
MaeII	ACGT	2 cut(s)	1748, 1853
MaeIII	GTNAC	3 cut(s)	1202, 1849, 1954
MalI	GATC	5 cut(s)	1524, 1553, 1763, 2196, 2251
MboI	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
MfeI	CAATTG	1 cut(s)	1506
MflI	RGATCY	1 cut(s)	1522
MhlI	GDGCHC	1 cut(s)	1171
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	315
Mph1103I	ATGCAT	1 cut(s)	1429
MroI	TCCGGA	1 cut(s)	75
MseI	TTAA	9 cut(s)	54, 762, 819, 1029, 1457, 1502, 1707, 2166, 2280
MslI	CAYNNNNRTG	3 cut(s)	494, 1245, 1632
MspA1I	CMGCKG	1 cut(s)	959
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	4 cut(s)	76, 223, 1001, 1285
MspR9I	CCNGG	4 cut(s)	527, 1172, 1286, 1527
MunI	CAATTG	1 cut(s)	1506
MvaI	CCWGG	3 cut(s)	527, 1172, 1527
MvnI	CGCG	2 cut(s)	389, 959
MwoI	GCNNNNNNNGC	5 cut(s)	796, 1229, 1904, 2000, 2372
NciI	CCSGG	1 cut(s)	1286
NcoI	CCATGG	1 cut(s)	2344
NdeII	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
NlaIV	GGNNCC	3 cut(s)	1169, 1472, 1839
NmeAIII	GCCGAG	2 cut(s)	214, 375
NmuCI	GTSAC	3 cut(s)	1202, 1849, 1954
NsiI	ATGCAT	1 cut(s)	1429
NspI	RCATGY	4 cut(s)	474, 575, 1085, 1250
OliI	CACNNNNGTG	1 cut(s)	494
PaeI	GCATGC	2 cut(s)	474, 1085
PaqCI	CACCTGC	1 cut(s)	2005
PciI	ACATGT	1 cut(s)	1246
PfeI	GAWTC	8 cut(s)	79, 376, 392, 1237, 1621, 1787, 2024, 2201
PfoI	TCCNGGA	1 cut(s)	1284
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	2 cut(s)	1749, 1854
PscI	ACATGT	1 cut(s)	1246
PshBI	ATTAAT	2 cut(s)	819, 1029
Psp6I	CCWGG	3 cut(s)	525, 1170, 1525
PspGI	CCWGG	3 cut(s)	525, 1170, 1525
PspN4I	GGNNCC	3 cut(s)	1169, 1472, 1839
PspOMI	GGGCCC	1 cut(s)	1167
PspPI	GGNCC	3 cut(s)	1167, 1168, 1516
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	1522
RsaI	GTAC	7 cut(s)	595, 903, 909, 1416, 1541, 1751, 1856
RsaNI	GTAC	7 cut(s)	594, 902, 908, 1415, 1540, 1750, 1855
RseI	CAYNNNNRTG	3 cut(s)	494, 1245, 1632
SacII	CCGCGG	1 cut(s)	960
SaqAI	TTAA	9 cut(s)	54, 762, 819, 1029, 1457, 1502, 1707, 2166, 2280
Sau3AI	GATC	5 cut(s)	1522, 1551, 1761, 2194, 2249
Sau96I	GGNCC	3 cut(s)	1167, 1168, 1516
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	4 cut(s)	527, 1172, 1286, 1527
SduI	GDGCHC	1 cut(s)	1171
SfcI	CTRYAG	6 cut(s)	320, 589, 918, 969, 1076, 1162
Sfr303I	CCGCGG	1 cut(s)	960
SgrBI	CCGCGG	1 cut(s)	960
SmiMI	CAYNNNNRTG	3 cut(s)	494, 1245, 1632
SmlI	CTYRAG	3 cut(s)	53, 1475, 2028
SmoI	CTYRAG	3 cut(s)	53, 1475, 2028
SnaBI	TACGTA	1 cut(s)	1749
SphI	GCATGC	2 cut(s)	474, 1085
SsiI	CCGC	8 cut(s)	43, 302, 389, 957, 959, 1064, 1777, 2216
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	5 cut(s)	59, 930, 1520, 1697, 2198
StyD4I	CCNGG	4 cut(s)	525, 1170, 1284, 1525
StyI	CCWWGG	1 cut(s)	2344
TaaI	ACNGT	9 cut(s)	270, 593, 970, 1163, 1282, 1593, 2163, 2340, 2382
TaiI	ACGT	2 cut(s)	1751, 1856
TaqI	TCGA	4 cut(s)	379, 405, 1497, 1602
TatI	WGTACW	3 cut(s)	593, 901, 1414
TauI	GCSGC	3 cut(s)	45, 1779, 2219
TfiI	GAWTC	8 cut(s)	79, 376, 392, 1237, 1621, 1787, 2024, 2201
Tru1I	TTAA	9 cut(s)	54, 762, 819, 1029, 1457, 1502, 1707, 2166, 2280
Tru9I	TTAA	9 cut(s)	54, 762, 819, 1029, 1457, 1502, 1707, 2166, 2280
TscAI	CASTG	3 cut(s)	273, 1166, 1596
TseFI	GTSAC	3 cut(s)	1202, 1849, 1954
TseI	GCWGC	8 cut(s)	237, 319, 1387, 1675, 1691, 1904, 2000, 2153
Tsp45I	GTSAC	3 cut(s)	1202, 1849, 1954
TspDTI	ATGAA	9 cut(s)	344, 552, 890, 1026, 1103, 1229, 1595, 1625, 2037
TspRI	CASTG	3 cut(s)	273, 1166, 1596
Vha464I	CTTAAG	1 cut(s)	53
VspI	ATTAAT	2 cut(s)	819, 1029
XagI	CCTNNNNNAGG	1 cut(s)	1478
XapI	RAATTY	2 cut(s)	122, 1568
XbaI	TCTAGA	1 cut(s)	2197
XceI	RCATGY	4 cut(s)	474, 575, 1085, 1250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	1434
XspI	CTAG	5 cut(s)	59, 930, 1520, 1697, 2198
ZrmI	AGTACT	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.