Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003467

Physical Location & Seq

Genomic Coordinates Reverse (-)

4900002 .. 4904300

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G068900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCAGTCTCCCGTCGTGGCCACCAAATTCCATTGCACAAAATCTGCAATTTACAGCACTGGCCACTGCAAGAAGAGAACCACCATCTTCCACTTCAAATTCACACGTTCCTCTACTTTTCGAATACAAAGATTCAACTTAGCTTGCCATAACCGAAACCCAGAGAACCATTTGGTCTCTCCATGGTCTTCCGACATTTTTCCAAGGGGCATAAGGAATTGCACAGAATGTATCAATGTTTCATGGAGATGGGTTTCTCAGGTCATCTCTTTTTACTTGTTCTGTCTAAATCTTGTCGCTGATGCTGTGGCAATTGACTATCCATCTCCTTCTTTTGTGTATGCTTGTGAAGATGTTAACAATTACTATGCCAATGCGGATCATTTAGAGGGTAAATCACTCAAGAAAAAACTGAATTCCATCATAGCCCGGCACCAATCTTTATCCTACAGAGAGGTGTGGAATGCCCTCAAGCTTCTTGATGCTTCGGATGTTGACAACCCCAAAGCTTCGTCAGGGATAGTTGAAATTTACTCCTTGAGGGTTGTACCCAAGTCGTTAGCTGGAAAGCCTGACGGATGGAATAGGGAGCATCTATGGCCTCGTTCTTATGGGTTAAAAGATGGTTCCTCCTTGACTGATTTACACAACATTCGCCCAGCAGATGTGAATGTCAATTCATCCAGGGGGAACAAATACTACGGAGAATGCAATGTTTACTCAACTAAGTGTTTGAAGCCAGCAAACAAAGAAGCTGCTTTGGACACGGAAACTGACAAGGACAGATGGGCACCACCTAAACAGCATAGAGGAGATATTGCAAGGGCGCTGATGTACATGGCAGTATGTTACGGGTTTCGTCAACCAGATGGAGGCCCAGCTCTTCACCTTTCAGATTCTCCAAAAAGTTCAACTAGTGAGATGGGACTGCTTTCTACATTGTTAAAGTGGAATGAGATTGACCCACCTTCAAGAGAAGAGAAGTTGAGAAATGAAAGAGTCTGCAAGTTTTATCAGCACAATAGAAATCCTTTTGTAGACCATCCAGAGTATGCAAGTCTCATATGGGAAGAACACAGTTCTCTTCGCCTTCCAAGGAGTCATGAAATTCACAACAAAAGACAGTTCAAGACAAGCCGATCCTCAGTTGACAGGCTTCAAACCTTCAAGGAAAGACATGGTGGAATTGCTATGACAGGCACGAAACAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_1

Protein Analysis

405

Amino Acids

46.29

Weight (kDa)

9.32

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06651 FvH4_4g06651 FvH4_4g06651 FvH4_4g06651
malus_domestica	MD16G1242000.v1.1 MD16G1242100.v1.1
prunus_persica	Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1
pyrus_communis	pycom16g20290
rosa_chinensis	RchiOBHm_Chr4g0398551
rosa_laevigata	RLG00000009345
rosa_multiflora	Rmu_sc0031448.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343520
rosa_rugosa	Rorug04G0009300
rosa_samantha	Rh4AG087100 Rh4BG083800 Rh4CG095300 Rh4DG078700
rosa_wichuraiana	Rw4G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	432, 790
AccI	GTMKAC	1 cut(s)	1038
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	387, 1134
AcoI	YGGCCR	2 cut(s)	18, 61
AcsI	RAATTY	5 cut(s)	26, 98, 415, 528, 1107
AfaI	GTAC	2 cut(s)	549, 836
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	9 cut(s)	97, 136, 527, 736, 912, 972, 1129, 1160, 1168
AhlI	ACTAGT	1 cut(s)	914
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	6 cut(s)	143, 475, 509, 563, 755, 881
AluI	AGCT	6 cut(s)	143, 475, 509, 563, 755, 881
Alw26I	GTCTC	3 cut(s)	12, 181, 1064
AlwI	GGATC	2 cut(s)	387, 1134
AoxI	GGCC	4 cut(s)	18, 61, 599, 874
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	5 cut(s)	26, 98, 415, 528, 1107
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	878
AsuII	TTCGAA	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	793
BalI	TGGCCA	2 cut(s)	20, 63
BanI	GGYRCC	2 cut(s)	432, 790
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	742
BciT130I	CCWGG	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	12, 181, 1064
BcuI	ACTAGT	1 cut(s)	914
BfaI	CTAG	1 cut(s)	915
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	830
BisI	GCNGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	757
Bme1390I	CCNGG	2 cut(s)	430, 685
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	3 cut(s)	434, 628, 792
BmrFI	CCNGG	2 cut(s)	430, 685
BmsI	GCATC	3 cut(s)	292, 472, 601
BpiI	GAAGAC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	121
BpuEI	CTTGAG	3 cut(s)	386, 455, 559
BpuMI	CCSGG	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	182, 203, 684, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	31, 718
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	182, 203, 684, 1094
BseGI	GGATG	4 cut(s)	496, 584, 680, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	2 cut(s)	31, 718
BseMII	CTCAG	2 cut(s)	272, 1158
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	1 cut(s)	742
BseYI	CCCAGC	2 cut(s)	658, 877
BshFI	GGCC	4 cut(s)	20, 63, 601, 876
BshNI	GGYRCC	2 cut(s)	432, 790
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	939
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	3 cut(s)	12, 181, 1064
BsmFI	GGGAC	1 cut(s)	939
BsmI	GAATGC	2 cut(s)	469, 713
BsnI	GGCC	4 cut(s)	20, 63, 601, 876
Bso31I	GGTCTC	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	793
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	379, 1139
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	4 cut(s)	20, 63, 601, 876
BspCNI	CTCAG	2 cut(s)	271, 1157
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	3 cut(s)	434, 628, 792
BspPI	GGATC	2 cut(s)	387, 1134
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	2 cut(s)	432, 790
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	31, 718
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	4 cut(s)	182, 203, 684, 1094
BssMI	GATC	2 cut(s)	379, 1139
BssT1I	CCWWGG	3 cut(s)	182, 203, 1094
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	1079, 1125
Bst6I	CTCTTC	4 cut(s)	68, 888, 972, 1089
BstAUI	TGTACA	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	145, 741
BstDEI	CTNAG	4 cut(s)	139, 258, 726, 1144
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	4 cut(s)	496, 584, 680, 1042
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	2 cut(s)	382, 1142
BstMAI	GTCTC	3 cut(s)	12, 181, 1064
BstMBI	GATC	2 cut(s)	379, 1139
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	428, 683
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	793
BstV1I	GCAGC	1 cut(s)	742
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	20, 63, 601, 876
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	496, 584, 680, 1042
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	57, 64
Cac8I	GCNNGC	2 cut(s)	145, 741
CciI	TCATGA	1 cut(s)	1102
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	1 cut(s)	875
Csp6I	GTAC	2 cut(s)	548, 835
CviAII	CATG	5 cut(s)	183, 243, 838, 1103, 1178
CviQI	GTAC	2 cut(s)	548, 835
DdeI	CTNAG	4 cut(s)	139, 258, 726, 1144
DpnI	GATC	2 cut(s)	381, 1141
DpnII	GATC	2 cut(s)	379, 1139
EaeI	YGGCCR	2 cut(s)	18, 61
Eam1104I	CTCTTC	4 cut(s)	68, 888, 972, 1089
EarI	CTCTTC	4 cut(s)	68, 888, 972, 1089
Eco130I	CCWWGG	3 cut(s)	182, 203, 1094
Eco31I	GGTCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	3 cut(s)	182, 203, 1094
ErhI	CCWWGG	3 cut(s)	182, 203, 1094
FaeI	CATG	5 cut(s)	186, 246, 841, 1106, 1181
FaqI	GGGAC	1 cut(s)	939
FatI	CATG	5 cut(s)	182, 242, 837, 1102, 1177
FauNDI	CATATG	1 cut(s)	1064
FblI	GTMKAC	1 cut(s)	1038
Fnu4HI	GCNGC	1 cut(s)	756
FokI	GGATG	4 cut(s)	503, 591, 667, 1029
Fsp4HI	GCNGC	1 cut(s)	756
FspBI	CTAG	1 cut(s)	915
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	1 cut(s)	756
GsaI	CCCAGC	2 cut(s)	662, 881
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	4 cut(s)	20, 63, 601, 876
HapII	CCGG	1 cut(s)	430
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	5 cut(s)	186, 246, 841, 1106, 1181
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	4 cut(s)	358, 496, 863, 1150
HindII	GTYRAC	4 cut(s)	358, 496, 863, 1150
HindIII	AAGCTT	2 cut(s)	473, 507
HinfI	GANTC	4 cut(s)	132, 896, 999, 1099
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	6 cut(s)	358, 496, 718, 863, 1039, 1150
Hpy188I	TCNGA	3 cut(s)	193, 490, 895
Hpy188III	TCNNGA	6 cut(s)	403, 479, 972, 1046, 1103, 1129
Hpy8I	GTNNAC	6 cut(s)	358, 496, 718, 863, 1039, 1150
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	339, 978, 1100, 1174
HpyCH4III	ACNGT	2 cut(s)	1079, 1125
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	9 cut(s)	4, 36, 47, 69, 222, 711, 821, 1005, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	4 cut(s)	139, 258, 726, 1144
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	186, 246, 841, 1106, 1181
HspAI	GCGC	1 cut(s)	827
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	379, 1139
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	1 cut(s)	742
LweI	GCATC	3 cut(s)	292, 472, 601
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	2 cut(s)	381, 1141
MboI	GATC	2 cut(s)	379, 1139
MboII	GAAGA	8 cut(s)	79, 85, 180, 362, 875, 989, 1076, 1082
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	793
MlsI	TGGCCA	2 cut(s)	20, 63
MluNI	TGGCCA	2 cut(s)	20, 63
MlyI	GAGTC	2 cut(s)	1008, 1108
MmeI	TCCRAC	1 cut(s)	216
Mox20I	TGGCCA	2 cut(s)	20, 63
MscI	TGGCCA	2 cut(s)	20, 63
MseI	TTAA	3 cut(s)	357, 617, 944
MslI	CAYNNNNRTG	1 cut(s)	247
Msp20I	TGGCCA	2 cut(s)	20, 63
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	430, 685
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	469, 713
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	598
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	1064
NdeII	GATC	2 cut(s)	379, 1139
NlaIII	CATG	5 cut(s)	186, 246, 841, 1106, 1181
NlaIV	GGNNCC	3 cut(s)	434, 628, 792
NspV	TTCGAA	1 cut(s)	121
PagI	TCATGA	1 cut(s)	1102
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	2 cut(s)	469, 713
PfeI	GAWTC	2 cut(s)	132, 896
PkrI	GCNGC	1 cut(s)	757
PleI	GAGTC	2 cut(s)	1007, 1107
PpsI	GAGTC	2 cut(s)	1007, 1107
Psp6I	CCWGG	1 cut(s)	683
PspFI	CCCAGC	2 cut(s)	658, 877
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	434, 628, 792
PspPI	GGNCC	1 cut(s)	875
PsrI	GAACNNNNNNTAC	2 cut(s)	683, 715
RsaI	GTAC	2 cut(s)	549, 836
RsaNI	GTAC	2 cut(s)	548, 835
RseI	CAYNNNNRTG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	3 cut(s)	357, 617, 944
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	2 cut(s)	379, 1139
Sau96I	GGNCC	1 cut(s)	875
SchI	GAGTC	2 cut(s)	1008, 1108
ScrFI	CCNGG	2 cut(s)	430, 685
SduI	GDGCHC	1 cut(s)	793
SfaNI	GCATC	3 cut(s)	292, 472, 601
SfcI	CTRYAG	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	3 cut(s)	401, 470, 538
SmoI	CTYRAG	3 cut(s)	401, 470, 538
SpeI	ACTAGT	1 cut(s)	914
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	915
StyD4I	CCNGG	2 cut(s)	428, 683
StyI	CCWWGG	3 cut(s)	182, 203, 1094
TaaI	ACNGT	2 cut(s)	1079, 1125
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	121
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	132, 896
Tru1I	TTAA	3 cut(s)	357, 617, 944
Tru9I	TTAA	3 cut(s)	357, 617, 944
TscAI	CASTG	2 cut(s)	64, 71
TseI	GCWGC	1 cut(s)	755
TspDTI	ATGAA	4 cut(s)	231, 669, 1008, 1119
TspGWI	ACGGA	3 cut(s)	591, 717, 782
TspRI	CASTG	2 cut(s)	64, 71
XapI	RAATTY	5 cut(s)	26, 98, 415, 528, 1107
XmiI	GTMKAC	1 cut(s)	1038
XspI	CTAG	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.