Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031448.1

Orthogroup ID

OG0003467

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1142

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 712 bp

atgcactcttggcttccaaccaatattacgagtgaagtcctaaacggattgggattccctgaatggggaaatgtggaacattatctaaaccacttggttactcgtggacttatgaaccagcagaaatgctccggaccttatgcatggcgaaaggatgtgcagcgaagcagagatcattttctctgttggccttacctcaatcccagagaacttggggtgtccaagagaatgcagtcttctccagtaatggcctccaaattccattgcacaaaacccgtcgttgtctgtaagcagagacccaactttttccggggccccgagaacttcaaactcaagccttttaatcgaaacccagatcatattttggtcagtccaatcacctccaccatttctacaaggggcatatgggatttcacaaagtgcatcaatatctcatggagatgggtttctcagattctctctgtttacttgctttttctcaatattgttgctgatgctcaggcctatgattacccatctccttcttcttcttcttcttctgtttatgcttgtgaagatgttaacagttactatgccaatgtggagcatttagagggtaaatcactcaagaagaaactgaattccatcattggcaagcatcaatctttatcttacagagaggtgtggaatgctctcaagattctagatgcttcggatgttgacaacccagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_1

Protein Analysis

237

Amino Acids

27.25

Weight (kDa)

9.08

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06651 FvH4_4g06651 FvH4_4g06651 FvH4_4g06651
malus_domestica	MD16G1242000.v1.1 MD16G1242100.v1.1
prunus_persica	Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1
pyrus_communis	pycom16g20290
rosa_chinensis	RchiOBHm_Chr4g0398551
rosa_laevigata	RLG00000009345
rosa_multiflora	Rmu_sc0031448.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343520
rosa_rugosa	Rorug04G0009300
rosa_samantha	Rh4AG087100 Rh4BG083800 Rh4CG095300 Rh4DG078700
rosa_wichuraiana	Rw4G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	257, 619
AdeI	CACNNNGTG	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	64, 65
AgsI	TTSAA	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	4 cut(s)	188, 249, 313, 501
ApaI	GGGCCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	257, 619
AspS9I	GGNCC	3 cut(s)	134, 313, 314
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	317
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	3 cut(s)	435, 523, 632
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	683
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	134, 313, 314
BmiI	GGNNCC	3 cut(s)	314, 315, 316
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	4 cut(s)	432, 484, 646, 676
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	3 cut(s)	317, 590, 659
BpuMI	CCSGG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 65
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	160, 700
BseLI	CCNNNNNNNGG	2 cut(s)	64, 65
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	464, 512
BseNI	ACTGG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	190, 251, 315, 503
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	132, 310
BslI	CCNNNNNNNGG	2 cut(s)	64, 65
BsmAI	GTCTC	1 cut(s)	289
BsmI	GAATGC	2 cut(s)	234, 673
BsnI	GGCC	4 cut(s)	190, 251, 315, 503
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	317
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	172, 355
BspANI	GGCC	4 cut(s)	190, 251, 315, 503
BspCNI	CTCAG	2 cut(s)	463, 511
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	314, 315, 316
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	172, 355
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	450, 498
BstF5I	GGATG	2 cut(s)	160, 700
BstKTI	GATC	2 cut(s)	175, 358
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	172, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	190, 251, 315, 503
BtsCI	GGATG	2 cut(s)	160, 700
Cac8I	GCNNGC	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	134, 313, 314
CviAII	CATG	2 cut(s)	144, 435
CviJI	RGCY	6 cut(s)	13, 190, 251, 315, 337, 503
CviKI_1	RGCY	6 cut(s)	13, 190, 251, 315, 337, 503
DdeI	CTNAG	2 cut(s)	450, 498
DpnI	GATC	2 cut(s)	174, 357
DpnII	GATC	2 cut(s)	172, 355
DraIII	CACNNNGTG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	313, 314
EcoRI	GAATTC	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	2 cut(s)	147, 438
FatI	CATG	2 cut(s)	143, 434
FauNDI	CATATG	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	167, 707
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	190, 251, 315, 503
HapII	CCGG	2 cut(s)	132, 310
Hin1II	CATG	2 cut(s)	147, 438
HincII	GTYRAC	2 cut(s)	562, 700
HindII	GTYRAC	2 cut(s)	562, 700
HinfI	GANTC	3 cut(s)	54, 454, 679
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	132, 310
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	107, 466, 562, 700
Hpy188I	TCNGA	2 cut(s)	453, 694
Hpy188III	TCNNGA	4 cut(s)	132, 607, 676, 683
Hpy8I	GTNNAC	4 cut(s)	107, 466, 562, 700
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	4, 143, 160, 232, 267, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	450, 498
Hsp92II	CATG	2 cut(s)	147, 438
Kpn2I	TCCGGA	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	172, 355
LmnI	GCTCC	2 cut(s)	134, 583
LpnPI	CCDG	8 cut(s)	72, 131, 145, 217, 255, 323, 366, 485
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	4 cut(s)	432, 484, 646, 676
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	2 cut(s)	97, 566
MalI	GATC	2 cut(s)	174, 357
MboI	GATC	2 cut(s)	172, 355
MboII	GAAGA	8 cut(s)	228, 516, 519, 522, 525, 528, 566, 622
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	257, 619
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	206, 262, 391, 586, 652
Mph1103I	ATGCAT	1 cut(s)	145
MroI	TCCGGA	1 cut(s)	131
MseI	TTAA	2 cut(s)	342, 561
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	2 cut(s)	132, 310
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	2 cut(s)	234, 673
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	311
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	2 cut(s)	172, 355
NlaIII	CATG	2 cut(s)	147, 438
NlaIV	GGNNCC	3 cut(s)	314, 315, 316
NsiI	ATGCAT	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	503
PctI	GAATGC	2 cut(s)	234, 673
PfeI	GAWTC	3 cut(s)	54, 454, 679
PkrI	GCNGC	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	314, 315, 316
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	3 cut(s)	134, 313, 314
RseI	CAYNNNNRTG	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	342, 561
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	172, 355
Sau96I	GGNCC	3 cut(s)	134, 313, 314
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	4 cut(s)	139, 198, 383, 663
SfaNI	GCATC	4 cut(s)	432, 484, 646, 676
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	3 cut(s)	332, 605, 674
SmoI	CTYRAG	3 cut(s)	332, 605, 674
Sse9I	AATT	2 cut(s)	257, 619
SseBI	AGGCCT	1 cut(s)	503
SspI	AATATT	2 cut(s)	25, 484
SspMI	CTAG	1 cut(s)	683
StuI	AGGCCT	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	1 cut(s)	346
TasI	AATT	2 cut(s)	257, 619
TfiI	GAWTC	3 cut(s)	54, 454, 679
Tru1I	TTAA	2 cut(s)	342, 561
Tru9I	TTAA	2 cut(s)	342, 561
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	257, 619
XbaI	TCTAGA	1 cut(s)	682
XspI	CTAG	1 cut(s)	683
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.